Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006879

Physical Location & Seq

Genomic Coordinates Reverse (-)

25758748 .. 25761611

Gene Structure 2864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g29120.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGAAGAAGATCATGGATCTTTACCCTTGGGCTGACGATTTCTTGATTGAGGATATTATGGTTGCAATGGATAATGATATGGATAAGGCCTCAATTTTATTGAAACAATGGTTTCCTCCGGCAGCTGTGGAGAGAATAACCAAACTAGCATTTCAAAAAAACAACTCCAGCTCAAATGTCTCTTTAAGTGATAGAGAATCTGTTCCTCAATCTCCTTCTGGCATTTCTAACCGTAACTCTACGATTCAAAACTGTCTCAAAGAGAATAAGATAGAATTGTTAACTGGTGATGATTGCGGTGTGCAAAAGCTTGCTATTGATGCAGCAAATAGGAAGCTGGTTCTGGGGAGTTTGGAGTCTGTACCCATCGAACCTGAGTGGGAAGAGGATGATGTTTACTTGAAGCATCGAAAAGATGCATTAAGGATGATGAGGTCAGCATCACAGCACTCTAAGGCAGCCACTCATGCCTTTGCAAGAGGTGACCATTTTTCCGCCCAACAACACTCAAAGAAGGCTCGAGAGGAACGGTTGGCTGCTGAAAGCCTCAATAAGAAGGCAGCCAAAGAAATTTTAAGGATCAAGAATAGCAAAAATGATTTATGGAAATTGGATTTACATGGCCTTCATGCATCTGAAGCAATTCAAGCCTTGCACGAACACCTGCAGCAAATTGAAACAAAGGAGCTATCTAATCGCTCTGTGTCACCAAACAGAGTTAAGATGGAAAAGATGATTATACGTTCTTCATCACATGAGTCGTTTAGTTGTACTGACAGAAAGAAATTGGATCAACAGAAGGCATCATCAACACAAAGATCGGCATCCTTAGAGATCATCACAGGGAGAGGTAATCATAGCCGAGGACAGGCTGCACTTCCAACAGCTGTGAGAAGTTTCCTTAATGAGAATGGGTATCGTTTTGAGGAGTTGAGACCAGGTGTAATCACAGTGCGGCCCAAGTTCCGTCACAGGGTTTTCCGGAAGAGAAATGCCGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1771 Smr

Protein Analysis

334

Amino Acids

37.78

Weight (kDa)

9.56

Isoelectric Point (pI)

50.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23520 AT5G23520
fragaria_vesca	FvH4_1g22090 FvH4_1g22090 FvH4_1g22090 FvH4_1g22090 FvH4_1g22090 FvH4_1g22090
malus_domestica	MD15G1334300.v1.1
prunus_persica	Prupe.6G175200_v2.0.a1 Prupe.6G175200_v2.0.a1 Prupe.6G175200_v2.0.a1
pyrus_communis	pycom15g29120
rosa_chinensis	RchiOBHm_Chr2g0116171
rosa_laevigata	RLG00000018245
rosa_multiflora	Rmu_sc0000863.1_g000045 Rmu_sc0002288.1_g000020 Rmu_sc0004693.1_g000001 Rmu_sc0006942.1_g000002
rosa_roxburghii	Rroxscaffold_2G00127440
rosa_rugosa	Rorug02G0204300 Rorug02G0204400 Rorug02G0204500 Rorug02G0204600
rosa_wichuraiana	Rw1G013010 Rw2G020400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	672
Acc36I	ACCTGC	1 cut(s)	672
AccIII	TCCGGA	1 cut(s)	981
AciI	CCGC	3 cut(s)	297, 495, 955
AclWI	GGATC	3 cut(s)	24, 587, 798
AcsI	RAATTY	1 cut(s)	570
AcuI	CTGAAG	1 cut(s)	657
AfaI	GTAC	2 cut(s)	363, 772
AfiI	CCNNNNNNNGG	2 cut(s)	868, 973
AgsI	TTSAA	6 cut(s)	103, 155, 248, 403, 647, 677
AjnI	CCWGG	1 cut(s)	937
AluBI	AGCT	6 cut(s)	125, 171, 310, 337, 688, 887
AluI	AGCT	6 cut(s)	125, 171, 310, 337, 688, 887
Alw26I	GTCTC	3 cut(s)	184, 260, 928
AlwI	GGATC	3 cut(s)	24, 587, 798
Ama87I	CYCGRG	1 cut(s)	519
Aor13HI	TCCGGA	1 cut(s)	981
AoxI	GGCC	3 cut(s)	87, 622, 956
ApeKI	GCWGC	7 cut(s)	122, 323, 458, 536, 560, 667, 872
ApoI	RAATTY	1 cut(s)	570
Asp700I	GAANNNNTTC	2 cut(s)	201, 642
AspS9I	GGNCC	1 cut(s)	957
AsuHPI	GGTGA	3 cut(s)	299, 494, 699
AvaI	CYCGRG	1 cut(s)	519
BbvI	GCAGC	7 cut(s)	134, 335, 470, 523, 572, 679, 859
BccI	CCATC	2 cut(s)	374, 718
BciT130I	CCWGG	1 cut(s)	939
BcoDI	GTCTC	3 cut(s)	184, 260, 928
BfaI	CTAG	1 cut(s)	146
BfmI	CTRYAG	1 cut(s)	665
BfuAI	ACCTGC	1 cut(s)	672
BisI	GCNGC	8 cut(s)	123, 324, 459, 537, 561, 668, 873, 956
BlsI	GCNGC	8 cut(s)	124, 325, 460, 538, 562, 669, 874, 957
Bme1390I	CCNGG	1 cut(s)	939
BmeT110I	CYCGRG	1 cut(s)	519
BmgT120I	GGNCC	1 cut(s)	957
BmrFI	CCNGG	1 cut(s)	939
BmsI	GCATC	7 cut(s)	310, 406, 415, 449, 641, 812, 833
BpmI	CTGGAG	1 cut(s)	151
BsaBI	GATNNNNATC	1 cut(s)	823
BsaI	GGTCTC	1 cut(s)	928
BsaJI	CCNNGG	2 cut(s)	26, 862
BsaWI	WCCGGW	1 cut(s)	981
Bsc4I	CCNNNNNNNGG	2 cut(s)	868, 973
Bse1I	ACTGG	1 cut(s)	289
Bse3DI	GCAATG	1 cut(s)	72
Bse8I	GATNNNNATC	1 cut(s)	823
BseAI	TCCGGA	1 cut(s)	981
BseBI	CCWGG	1 cut(s)	939
BseDI	CCNNGG	2 cut(s)	26, 862
BseGI	GGATG	3 cut(s)	394, 432, 824
BseJI	GATNNNNATC	1 cut(s)	823
BseLI	CCNNNNNNNGG	2 cut(s)	868, 973
BseMI	GCAATG	1 cut(s)	72
BseMII	CTCAG	1 cut(s)	366
BseNI	ACTGG	1 cut(s)	289
BseRI	GAGGAG	1 cut(s)	941
BseXI	GCAGC	7 cut(s)	134, 335, 470, 523, 572, 679, 859
BsgI	GTGCAG	1 cut(s)	858
BshFI	GGCC	3 cut(s)	89, 624, 958
BsiHKCI	CYCGRG	1 cut(s)	519
BsiSI	CCGG	3 cut(s)	119, 982, 996
BslI	CCNNNNNNNGG	2 cut(s)	868, 973
BsmAI	GTCTC	3 cut(s)	184, 260, 928
BsnI	GGCC	3 cut(s)	89, 624, 958
Bso31I	GGTCTC	1 cut(s)	928
BsoBI	CYCGRG	1 cut(s)	519
Bsp13I	TCCGGA	1 cut(s)	981
Bsp143I	GATC	6 cut(s)	9, 16, 579, 790, 818, 834
BspACI	CCGC	3 cut(s)	297, 495, 955
BspANI	GGCC	3 cut(s)	89, 624, 958
BspCNI	CTCAG	1 cut(s)	367
BspEI	TCCGGA	1 cut(s)	981
BspMAI	CTGCAG	1 cut(s)	669
BspMI	ACCTGC	1 cut(s)	672
BspPI	GGATC	3 cut(s)	24, 587, 798
BspTNI	GGTCTC	1 cut(s)	928
BsrDI	GCAATG	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	289
BssECI	CCNNGG	2 cut(s)	26, 862
BssMI	GATC	6 cut(s)	9, 16, 579, 790, 818, 834
BssT1I	CCWWGG	1 cut(s)	26
Bst2UI	CCWGG	1 cut(s)	939
Bst4CI	ACNGT	4 cut(s)	233, 254, 531, 952
Bst6I	CTCTTC	2 cut(s)	378, 980
BstC8I	GCNNGC	1 cut(s)	312
BstDEI	CTNAG	3 cut(s)	375, 453, 829
BstEII	GGTNACC	1 cut(s)	482
BstF5I	GGATG	3 cut(s)	394, 432, 824
BstKTI	GATC	6 cut(s)	12, 19, 582, 793, 821, 837
BstMAI	GTCTC	3 cut(s)	184, 260, 928
BstMBI	GATC	6 cut(s)	9, 16, 579, 790, 818, 834
BstMWI	GCNNNNNNNGC	4 cut(s)	320, 467, 638, 647
BstNI	CCWGG	1 cut(s)	939
BstPI	GGTNACC	1 cut(s)	482
BstSCI	CCNGG	1 cut(s)	937
BstSFI	CTRYAG	1 cut(s)	665
BstV1I	GCAGC	7 cut(s)	134, 335, 470, 523, 572, 679, 859
BstX2I	RGATCY	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	16
BsuRI	GGCC	3 cut(s)	89, 624, 958
BtsCI	GGATG	3 cut(s)	394, 432, 824
BtsIMutI	CAGTG	1 cut(s)	957
BveI	ACCTGC	1 cut(s)	672
Cac8I	GCNNGC	1 cut(s)	312
Cfr13I	GGNCC	1 cut(s)	957
CsiI	ACCWGGT	1 cut(s)	937
Csp6I	GTAC	2 cut(s)	362, 771
CviAII	CATG	5 cut(s)	13, 467, 620, 629, 755
CviQI	GTAC	2 cut(s)	362, 771
DdeI	CTNAG	3 cut(s)	375, 453, 829
DpnI	GATC	6 cut(s)	11, 18, 581, 792, 820, 836
DpnII	GATC	6 cut(s)	9, 16, 579, 790, 818, 834
Eam1104I	CTCTTC	2 cut(s)	378, 980
EarI	CTCTTC	2 cut(s)	378, 980
EciI	GGCGGA	1 cut(s)	484
Eco130I	CCWWGG	1 cut(s)	26
Eco147I	AGGCCT	1 cut(s)	89
Eco31I	GGTCTC	1 cut(s)	928
Eco57I	CTGAAG	1 cut(s)	657
Eco88I	CYCGRG	1 cut(s)	519
Eco91I	GGTNACC	1 cut(s)	482
EcoO65I	GGTNACC	1 cut(s)	482
EcoRII	CCWGG	1 cut(s)	937
EcoT14I	CCWWGG	1 cut(s)	26
EcoT22I	ATGCAT	2 cut(s)	421, 634
ErhI	CCWWGG	1 cut(s)	26
FaeI	CATG	5 cut(s)	16, 470, 623, 632, 758
FatI	CATG	5 cut(s)	12, 466, 619, 628, 754
Fnu4HI	GCNGC	8 cut(s)	123, 324, 459, 537, 561, 668, 873, 956
FokI	GGATG	3 cut(s)	401, 439, 811
Fsp4HI	GCNGC	8 cut(s)	123, 324, 459, 537, 561, 668, 873, 956
FspBI	CTAG	1 cut(s)	146
GluI	GCNGC	8 cut(s)	123, 324, 459, 537, 561, 668, 873, 956
GsuI	CTGGAG	1 cut(s)	151
HaeIII	GGCC	3 cut(s)	89, 624, 958
HapII	CCGG	3 cut(s)	119, 982, 996
Hin1II	CATG	5 cut(s)	16, 470, 623, 632, 758
HincII	GTYRAC	1 cut(s)	282
HindII	GTYRAC	1 cut(s)	282
HindIII	AAGCTT	1 cut(s)	308
HinfI	GANTC	4 cut(s)	197, 244, 356, 758
HpaI	GTTAAC	1 cut(s)	282
HpaII	CCGG	3 cut(s)	119, 982, 996
HphI	GGTGA	3 cut(s)	299, 494, 699
Hpy166II	GTNNAC	2 cut(s)	282, 397
Hpy188I	TCNGA	1 cut(s)	637
Hpy188III	TCNNGA	4 cut(s)	43, 521, 583, 982
Hpy8I	GTNNAC	2 cut(s)	282, 397
HpyAV	CCTTC	5 cut(s)	225, 508, 550, 635, 793
HpyCH4III	ACNGT	4 cut(s)	233, 254, 531, 952
HpyCH4IV	ACGT	1 cut(s)	742
HpyCH4V	TGCA	9 cut(s)	65, 304, 323, 419, 476, 632, 655, 667, 875
HpyF10VI	GCNNNNNNNGC	4 cut(s)	320, 467, 638, 647
HpyF3I	CTNAG	3 cut(s)	375, 453, 829
HpySE526I	ACGT	1 cut(s)	742
Hsp92II	CATG	5 cut(s)	16, 470, 623, 632, 758
Kpn2I	TCCGGA	1 cut(s)	981
KspAI	GTTAAC	1 cut(s)	282
Kzo9I	GATC	6 cut(s)	9, 16, 579, 790, 818, 834
LmnI	GCTCC	1 cut(s)	685
Lsp1109I	GCAGC	7 cut(s)	134, 335, 470, 523, 572, 679, 859
LweI	GCATC	7 cut(s)	310, 406, 415, 449, 641, 812, 833
MabI	ACCWGGT	1 cut(s)	937
MaeI	CTAG	1 cut(s)	146
MaeII	ACGT	1 cut(s)	742
MaeIII	GTNAC	4 cut(s)	233, 482, 705, 968
MalI	GATC	6 cut(s)	11, 18, 581, 792, 820, 836
MboI	GATC	6 cut(s)	9, 16, 579, 790, 818, 834
MboII	GAAGA	5 cut(s)	16, 19, 395, 738, 997
MflI	RGATCY	1 cut(s)	16
MluCI	AATT	7 cut(s)	93, 275, 570, 608, 642, 672, 785
MlyI	GAGTC	2 cut(s)	365, 767
MmeI	TCCRAC	1 cut(s)	905
Mph1103I	ATGCAT	2 cut(s)	421, 634
MroI	TCCGGA	1 cut(s)	981
MroXI	GAANNNNTTC	2 cut(s)	201, 642
MseI	TTAA	6 cut(s)	185, 281, 422, 575, 720, 903
MspA1I	CMGCKG	2 cut(s)	125, 887
MspI	CCGG	3 cut(s)	119, 982, 996
MspR9I	CCNGG	1 cut(s)	939
MvaI	CCWGG	1 cut(s)	939
MwoI	GCNNNNNNNGC	4 cut(s)	320, 467, 638, 647
NdeII	GATC	6 cut(s)	9, 16, 579, 790, 818, 834
NlaIII	CATG	5 cut(s)	16, 470, 623, 632, 758
NmeAIII	GCCGAG	1 cut(s)	887
NmuCI	GTSAC	3 cut(s)	482, 705, 968
NsiI	ATGCAT	2 cut(s)	421, 634
PaeR7I	CTCGAG	1 cut(s)	519
PaqCI	CACCTGC	1 cut(s)	672
PceI	AGGCCT	1 cut(s)	89
PdmI	GAANNNNTTC	2 cut(s)	201, 642
PfeI	GAWTC	2 cut(s)	197, 244
PkrI	GCNGC	8 cut(s)	124, 325, 460, 538, 562, 669, 874, 957
PleI	GAGTC	2 cut(s)	364, 766
PpsI	GAGTC	2 cut(s)	364, 766
Psp6I	CCWGG	1 cut(s)	937
PspEI	GGTNACC	1 cut(s)	482
PspGI	CCWGG	1 cut(s)	937
PspPI	GGNCC	1 cut(s)	957
PstI	CTGCAG	1 cut(s)	669
PsuI	RGATCY	1 cut(s)	16
PvuII	CAGCTG	2 cut(s)	125, 887
RsaI	GTAC	2 cut(s)	363, 772
RsaNI	GTAC	2 cut(s)	362, 771
SaqAI	TTAA	6 cut(s)	185, 281, 422, 575, 720, 903
SatI	GCNGC	8 cut(s)	123, 324, 459, 537, 561, 668, 873, 956
Sau3AI	GATC	6 cut(s)	9, 16, 579, 790, 818, 834
Sau96I	GGNCC	1 cut(s)	957
SchI	GAGTC	2 cut(s)	365, 767
ScrFI	CCNGG	1 cut(s)	939
SexAI	ACCWGGT	1 cut(s)	937
SfaNI	GCATC	7 cut(s)	310, 406, 415, 449, 641, 812, 833
SfcI	CTRYAG	1 cut(s)	665
Sfr274I	CTCGAG	1 cut(s)	519
SlaI	CTCGAG	1 cut(s)	519
SmlI	CTYRAG	1 cut(s)	519
SmoI	CTYRAG	1 cut(s)	519
Sse9I	AATT	7 cut(s)	93, 275, 570, 608, 642, 672, 785
SseBI	AGGCCT	1 cut(s)	89
SsiI	CCGC	3 cut(s)	297, 495, 955
SspMI	CTAG	1 cut(s)	146
StuI	AGGCCT	1 cut(s)	89
StyD4I	CCNGG	1 cut(s)	937
StyI	CCWWGG	1 cut(s)	26
TaaI	ACNGT	4 cut(s)	233, 254, 531, 952
TaiI	ACGT	1 cut(s)	745
TaqI	TCGA	3 cut(s)	369, 409, 520
TasI	AATT	7 cut(s)	93, 275, 570, 608, 642, 672, 785
TatI	WGTACW	1 cut(s)	770
TauI	GCSGC	1 cut(s)	958
TfiI	GAWTC	2 cut(s)	197, 244
Tru1I	TTAA	6 cut(s)	185, 281, 422, 575, 720, 903
Tru9I	TTAA	6 cut(s)	185, 281, 422, 575, 720, 903
TscAI	CASTG	1 cut(s)	957
TseFI	GTSAC	3 cut(s)	482, 705, 968
TseI	GCWGC	7 cut(s)	122, 323, 458, 536, 560, 667, 872
Tsp45I	GTSAC	3 cut(s)	482, 705, 968
TspDTI	ATGAA	3 cut(s)	17, 617, 738
TspGWI	ACGGA	1 cut(s)	956
TspRI	CASTG	1 cut(s)	957
XapI	RAATTY	1 cut(s)	570
XhoI	CTCGAG	1 cut(s)	519
XmnI	GAANNNNTTC	2 cut(s)	201, 642
XspI	CTAG	1 cut(s)	146
Zsp2I	ATGCAT	2 cut(s)	421, 634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.