Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006879

Physical Location & Seq

Genomic Coordinates Forward (+)

19157377 .. 19160318

Gene Structure 2942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0204500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGATCCTTCGCTGTATGAGGCAGTGAAATCTGGTGATCTTTGTTTTCTCAAAGAAGTTAGAGATGGGGATAGATCAGTTGATATTCTCTTTCAGAAGACCCCTAAAAACAACAATGTTCTTCACATAGCTGCTCAGTTCAAGCAAACACAGTTCTTCAAGGAATTCCCAAATCAGATTCAATCTCCGTTGTTTTGGGCCACCAACACCAGAGGCCAGATCGATTGGGATTTCGTATTCGACGATGCGAATGGGTTAGAATTGTTGCAAGAGTTGGAGAACCCGGCCGTCACGGCGGCAACTAGGGCTTCGCCTTCTTCATTGTCGTCATCAACAGTGGAGGATGCTCTGGCCAACCCGGAGACGGGATCGATTGACACGTGGATCGGCGAGGTTGAGGAGATGCTGATGAAAGACGATGACGGAAGCAAGGTGGCTTCGGAGGAGCCACCTAAGGAGTACTATGAGAGTTTTTTTGGCGGATGTACTCATGGACTCGCCTTCGACGGAATCTCCGGCCTACGTGGATTCGAATTCAAACAGCTGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1771 Smr

Protein Analysis

183

Amino Acids

20.41

Weight (kDa)

4.41

Isoelectric Point (pI)

35.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23520 AT5G23520
fragaria_vesca	FvH4_1g22090 FvH4_1g22090 FvH4_1g22090 FvH4_1g22090 FvH4_1g22090 FvH4_1g22090
malus_domestica	MD15G1334300.v1.1
prunus_persica	Prupe.6G175200_v2.0.a1 Prupe.6G175200_v2.0.a1 Prupe.6G175200_v2.0.a1
pyrus_communis	pycom15g29120
rosa_chinensis	RchiOBHm_Chr2g0116171
rosa_laevigata	RLG00000018245
rosa_multiflora	Rmu_sc0000863.1_g000045 Rmu_sc0002288.1_g000020 Rmu_sc0004693.1_g000001 Rmu_sc0006942.1_g000002
rosa_roxburghii	Rroxscaffold_2G00127440
rosa_rugosa	Rorug02G0204300 Rorug02G0204400 Rorug02G0204500 Rorug02G0204600
rosa_wichuraiana	Rw1G013010 Rw2G020400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	296, 480
AclWI	GGATC	3 cut(s)	12, 376, 392
AcoI	YGGCCR	2 cut(s)	285, 351
AcsI	RAATTY	2 cut(s)	164, 533
AcvI	CACGTG	1 cut(s)	381
AfaI	GTAC	2 cut(s)	461, 487
AfiI	CCNNNNNNNGG	2 cut(s)	364, 365
AflIII	ACRYGT	1 cut(s)	378
AgsI	TTSAA	4 cut(s)	142, 160, 182, 538
AluBI	AGCT	2 cut(s)	131, 544
AluI	AGCT	2 cut(s)	131, 544
Alw26I	GTCTC	1 cut(s)	356
AlwI	GGATC	3 cut(s)	12, 376, 392
AoxI	GGCC	5 cut(s)	198, 214, 285, 351, 517
ApeKI	GCWGC	2 cut(s)	131, 544
ApoI	RAATTY	2 cut(s)	164, 533
AspS9I	GGNCC	1 cut(s)	198
AsuC2I	CCSGG	2 cut(s)	284, 359
AsuHPI	GGTGA	1 cut(s)	47
AsuII	TTCGAA	1 cut(s)	531
AxyI	CCTNAGG	1 cut(s)	453
BalI	TGGCCA	1 cut(s)	353
BamHI	GGATCC	1 cut(s)	4
BbrPI	CACGTG	1 cut(s)	381
BbsI	GAAGAC	1 cut(s)	104
BbvI	GCAGC	2 cut(s)	118, 531
BccI	CCATC	1 cut(s)	59
BceAI	ACGGC	2 cut(s)	272, 309
BcnI	CCSGG	2 cut(s)	284, 359
BcoDI	GTCTC	1 cut(s)	356
BfaI	CTAG	1 cut(s)	303
BglI	GCCNNNNNGGC	1 cut(s)	293
BisI	GCNGC	3 cut(s)	132, 297, 545
BlsI	GCNGC	3 cut(s)	133, 298, 546
BmcAI	AGTACT	1 cut(s)	461
Bme1390I	CCNGG	2 cut(s)	284, 359
BmgT120I	GGNCC	1 cut(s)	198
BmiI	GGNNCC	2 cut(s)	6, 447
BmrFI	CCNGG	2 cut(s)	284, 359
BmsI	GCATC	3 cut(s)	235, 334, 393
BpiI	GAAGAC	1 cut(s)	104
Bpu14I	TTCGAA	1 cut(s)	531
BpuMI	CCSGG	2 cut(s)	284, 359
Bsa29I	ATCGAT	2 cut(s)	222, 371
BsaAI	YACGTR	2 cut(s)	381, 524
BsaXI	ACNNNNNCTCC	2 cut(s)	497, 527
Bsc4I	CCNNNNNNNGG	2 cut(s)	364, 365
Bse21I	CCTNAGG	1 cut(s)	453
BseCI	ATCGAT	2 cut(s)	222, 371
BseGI	GGATG	2 cut(s)	349, 488
BseLI	CCNNNNNNNGG	2 cut(s)	364, 365
BseMII	CTCAG	1 cut(s)	149
BseRI	GAGGAG	2 cut(s)	413, 458
BseX3I	CGGCCG	1 cut(s)	285
BseXI	GCAGC	2 cut(s)	118, 531
BsgI	GTGCAG	1 cut(s)	530
Bsh1285I	CGRYCG	1 cut(s)	288
BshFI	GGCC	5 cut(s)	200, 216, 287, 353, 519
BshVI	ATCGAT	2 cut(s)	222, 371
BsiEI	CGRYCG	1 cut(s)	288
BsiSI	CCGG	3 cut(s)	284, 359, 516
BslI	CCNNNNNNNGG	2 cut(s)	364, 365
BsmAI	GTCTC	1 cut(s)	356
BsmBI	CGTCTC	1 cut(s)	356
BsnI	GGCC	5 cut(s)	200, 216, 287, 353, 519
Bsp119I	TTCGAA	1 cut(s)	531
Bsp143I	GATC	6 cut(s)	4, 37, 74, 219, 368, 384
BspACI	CCGC	2 cut(s)	296, 480
BspANI	GGCC	5 cut(s)	200, 216, 287, 353, 519
BspCNI	CTCAG	1 cut(s)	148
BspDI	ATCGAT	2 cut(s)	222, 371
BspLI	GGNNCC	2 cut(s)	6, 447
BspPI	GGATC	3 cut(s)	12, 376, 392
BspT104I	TTCGAA	1 cut(s)	531
BssMI	GATC	6 cut(s)	4, 37, 74, 219, 368, 384
Bst4CI	ACNGT	2 cut(s)	153, 337
BstBAI	YACGTR	2 cut(s)	381, 524
BstBI	TTCGAA	1 cut(s)	531
BstDEI	CTNAG	2 cut(s)	135, 453
BstF5I	GGATG	2 cut(s)	349, 488
BstKTI	GATC	6 cut(s)	7, 40, 77, 222, 371, 387
BstMAI	GTCTC	1 cut(s)	356
BstMBI	GATC	6 cut(s)	4, 37, 74, 219, 368, 384
BstMCI	CGRYCG	1 cut(s)	288
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 305
BstSCI	CCNGG	2 cut(s)	282, 357
BstV1I	GCAGC	2 cut(s)	118, 531
BstV2I	GAAGAC	1 cut(s)	104
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BstZI	CGGCCG	1 cut(s)	285
Bsu15I	ATCGAT	2 cut(s)	222, 371
Bsu36I	CCTNAGG	1 cut(s)	453
BsuRI	GGCC	5 cut(s)	200, 216, 287, 353, 519
BsuTUI	ATCGAT	2 cut(s)	222, 371
BtsCI	GGATG	2 cut(s)	349, 488
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	3 cut(s)	30, 342, 547
Cfr13I	GGNCC	1 cut(s)	198
ClaI	ATCGAT	2 cut(s)	222, 371
Csp6I	GTAC	2 cut(s)	460, 486
CviAII	CATG	1 cut(s)	491
CviQI	GTAC	2 cut(s)	460, 486
DdeI	CTNAG	2 cut(s)	135, 453
DpnI	GATC	6 cut(s)	6, 39, 76, 221, 370, 386
DpnII	GATC	6 cut(s)	4, 37, 74, 219, 368, 384
EaeI	YGGCCR	2 cut(s)	285, 351
EagI	CGGCCG	1 cut(s)	285
EciI	GGCGGA	1 cut(s)	495
EclXI	CGGCCG	1 cut(s)	285
Eco52I	CGGCCG	1 cut(s)	285
Eco72I	CACGTG	1 cut(s)	381
Eco81I	CCTNAGG	1 cut(s)	453
EcoRI	GAATTC	2 cut(s)	164, 533
Esp3I	CGTCTC	1 cut(s)	356
FaeI	CATG	1 cut(s)	494
FaiI	YATR	4 cut(s)	18, 128, 465, 492
FatI	CATG	1 cut(s)	490
Fnu4HI	GCNGC	3 cut(s)	132, 297, 545
FokI	GGATG	2 cut(s)	356, 495
Fsp4HI	GCNGC	3 cut(s)	132, 297, 545
FspBI	CTAG	1 cut(s)	303
GluI	GCNGC	3 cut(s)	132, 297, 545
HaeIII	GGCC	5 cut(s)	200, 216, 287, 353, 519
HapII	CCGG	3 cut(s)	284, 359, 516
Hin1II	CATG	1 cut(s)	494
HinfI	GANTC	4 cut(s)	178, 495, 510, 528
HpaII	CCGG	3 cut(s)	284, 359, 516
HphI	GGTGA	1 cut(s)	47
Hpy188I	TCNGA	3 cut(s)	96, 177, 442
Hpy99I	CGWCG	2 cut(s)	245, 509
HpyAV	CCTTC	3 cut(s)	18, 324, 511
HpyCH4III	ACNGT	2 cut(s)	153, 337
HpyCH4IV	ACGT	2 cut(s)	380, 523
HpyCH4V	TGCA	2 cut(s)	268, 547
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 305
HpyF3I	CTNAG	2 cut(s)	135, 453
HpySE526I	ACGT	2 cut(s)	380, 523
Hsp92II	CATG	1 cut(s)	494
Kzo9I	GATC	6 cut(s)	4, 37, 74, 219, 368, 384
LmnI	GCTCC	1 cut(s)	445
LpnPI	CCDG	7 cut(s)	18, 223, 230, 297, 335, 372, 529
Lsp1109I	GCAGC	2 cut(s)	118, 531
LweI	GCATC	3 cut(s)	235, 334, 393
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	2 cut(s)	380, 523
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	6 cut(s)	6, 39, 76, 221, 370, 386
MboI	GATC	6 cut(s)	4, 37, 74, 219, 368, 384
MboII	GAAGA	4 cut(s)	109, 113, 148, 309
MflI	RGATCY	1 cut(s)	4
MlsI	TGGCCA	1 cut(s)	353
MluCI	AATT	3 cut(s)	164, 260, 533
MluNI	TGGCCA	1 cut(s)	353
MlyI	GAGTC	1 cut(s)	489
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	6 cut(s)	13, 206, 334, 385, 391, 436
Mox20I	TGGCCA	1 cut(s)	353
MscI	TGGCCA	1 cut(s)	353
Msp20I	TGGCCA	1 cut(s)	353
MspA1I	CMGCKG	1 cut(s)	544
MspI	CCGG	3 cut(s)	284, 359, 516
MspR9I	CCNGG	2 cut(s)	284, 359
MwoI	GCNNNNNNNGC	2 cut(s)	293, 305
NciI	CCSGG	2 cut(s)	284, 359
NdeII	GATC	6 cut(s)	4, 37, 74, 219, 368, 384
NlaIII	CATG	1 cut(s)	494
NlaIV	GGNNCC	2 cut(s)	6, 447
NmuCI	GTSAC	1 cut(s)	289
NspV	TTCGAA	1 cut(s)	531
PcsI	WCGNNNNNNNCGW	2 cut(s)	240, 377
PfeI	GAWTC	3 cut(s)	178, 510, 528
PkrI	GCNGC	3 cut(s)	133, 298, 546
PleI	GAGTC	1 cut(s)	489
PmaCI	CACGTG	1 cut(s)	381
PmlI	CACGTG	1 cut(s)	381
PpsI	GAGTC	1 cut(s)	489
Ppu21I	YACGTR	2 cut(s)	381, 524
PspCI	CACGTG	1 cut(s)	381
PspN4I	GGNNCC	2 cut(s)	6, 447
PspPI	GGNCC	1 cut(s)	198
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	544
RsaI	GTAC	2 cut(s)	461, 487
RsaNI	GTAC	2 cut(s)	460, 486
SatI	GCNGC	3 cut(s)	132, 297, 545
Sau3AI	GATC	6 cut(s)	4, 37, 74, 219, 368, 384
Sau96I	GGNCC	1 cut(s)	198
ScaI	AGTACT	1 cut(s)	461
SchI	GAGTC	1 cut(s)	489
ScrFI	CCNGG	2 cut(s)	284, 359
SetI	ASST	7 cut(s)	133, 383, 396, 435, 454, 526, 546
SfaNI	GCATC	3 cut(s)	235, 334, 393
SfuI	TTCGAA	1 cut(s)	531
Sse9I	AATT	3 cut(s)	164, 260, 533
SsiI	CCGC	2 cut(s)	296, 480
SspMI	CTAG	1 cut(s)	303
StyD4I	CCNGG	2 cut(s)	282, 357
TaaI	ACNGT	2 cut(s)	153, 337
TaiI	ACGT	2 cut(s)	383, 526
TaqI	TCGA	5 cut(s)	222, 240, 371, 504, 531
TasI	AATT	3 cut(s)	164, 260, 533
TatI	WGTACW	2 cut(s)	459, 485
TauI	GCSGC	1 cut(s)	299
TfiI	GAWTC	3 cut(s)	178, 510, 528
TscAI	CASTG	2 cut(s)	30, 342
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	2 cut(s)	131, 544
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	2 cut(s)	309, 425
TspGWI	ACGGA	3 cut(s)	177, 438, 522
TspRI	CASTG	2 cut(s)	30, 342
XapI	RAATTY	2 cut(s)	164, 533
XspI	CTAG	1 cut(s)	303
ZrmI	AGTACT	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.