Rw1G013010

DUF1771

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0006879
Physical Location & Seq
Reverse (-)
28987949 .. 28988436
488 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G013010.1

Sequence Viewer

Length: 300 bp
ATGGCTGTAATGGATAATGATTTATATAGACCCAAGCTTGCTGGAGACATGATACTAACTACTGGGATTTTGGAGTCTGTACCCATCGAACCTAAGTGGGAAGAGGATGATGTTTACTTGAGGATACGAACAGATGCATTAAGGATGATGAGGTCAGCGTCTCAACATTCGAAAGCTGCCACTAATATCTTTATAAGAGGTGACCATTATTCTGCTCAACAAAACTCAATCAAGGCTAGAGAGGAATGGTTAGTTGCTGAAAGCCTCAATAAAAGGCAGCTAAGGAAATCTTTAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1771 Smr

Protein Analysis

99

Amino Acids

11.43

Weight (kDa)

8.05

Isoelectric Point (pI)

58.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1771 PF08590 39 - 91 1.9e-07 Domain of unknown function (DUF1771)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 194
AfaI GTAC 1 cut(s) 81
AluBI AGCT 3 cut(s) 37, 176, 280
AluI AGCT 3 cut(s) 37, 176, 280
Alw26I GTCTC 2 cut(s) 39, 165
ApeKI GCWGC 2 cut(s) 176, 277
AsuHPI GGTGA 1 cut(s) 212
AsuII TTCGAA 1 cut(s) 170
BbvI GCAGC 2 cut(s) 163, 289
BccI CCATC 1 cut(s) 92
BciVI GTATCC 1 cut(s) 117
BcoDI GTCTC 2 cut(s) 39, 165
BfaI CTAG 1 cut(s) 237
BfuI GTATCC 1 cut(s) 117
BisI GCNGC 2 cut(s) 177, 278
BlsI GCNGC 2 cut(s) 178, 279
BmrI ACTGGG 1 cut(s) 72
BmsI GCATC 1 cut(s) 124
BmuI ACTGGG 1 cut(s) 72
BpmI CTGGAG 1 cut(s) 63
Bpu10I CCTNAGC 1 cut(s) 281
Bpu14I TTCGAA 1 cut(s) 170
BpuEI CTTGAG 1 cut(s) 139
Bse1I ACTGG 1 cut(s) 67
BseGI GGATG 2 cut(s) 112, 150
BseNI ACTGG 1 cut(s) 67
BseXI GCAGC 2 cut(s) 163, 289
BsmAI GTCTC 2 cut(s) 39, 165
BsmBI CGTCTC 1 cut(s) 165
Bsp119I TTCGAA 1 cut(s) 170
BspT104I TTCGAA 1 cut(s) 170
BsrI ACTGG 1 cut(s) 67
Bst6I CTCTTC 1 cut(s) 96
BstBI TTCGAA 1 cut(s) 170
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 2 cut(s) 93, 281
BstEII GGTNACC 1 cut(s) 200
BstF5I GGATG 2 cut(s) 112, 150
BstMAI GTCTC 2 cut(s) 39, 165
BstPI GGTNACC 1 cut(s) 200
BstV1I GCAGC 2 cut(s) 163, 289
BsuI GTATCC 1 cut(s) 117
BtsCI GGATG 2 cut(s) 112, 150
Cac8I GCNNGC 1 cut(s) 39
CseI GACGC 1 cut(s) 147
Csp6I GTAC 1 cut(s) 80
CviAII CATG 1 cut(s) 49
CviJI RGCY 6 cut(s) 5, 37, 176, 236, 264, 280
CviKI_1 RGCY 6 cut(s) 5, 37, 176, 236, 264, 280
CviQI GTAC 1 cut(s) 80
DdeI CTNAG 2 cut(s) 93, 281
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
Eco91I GGTNACC 1 cut(s) 200
EcoO65I GGTNACC 1 cut(s) 200
EcoT22I ATGCAT 1 cut(s) 139
Esp3I CGTCTC 1 cut(s) 165
FaeI CATG 1 cut(s) 52
FaiI YATR 5 cut(s) 25, 27, 50, 194, 298
FalI AAGNNNNNCTT 1 cut(s) 274
FatI CATG 1 cut(s) 48
Fnu4HI GCNGC 2 cut(s) 177, 278
FokI GGATG 2 cut(s) 119, 157
Fsp4HI GCNGC 2 cut(s) 177, 278
FspBI CTAG 1 cut(s) 237
GluI GCNGC 2 cut(s) 177, 278
GsuI CTGGAG 1 cut(s) 63
HgaI GACGC 1 cut(s) 147
Hin1II CATG 1 cut(s) 52
HindIII AAGCTT 1 cut(s) 35
HinfI GANTC 1 cut(s) 74
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 1 cut(s) 115
Hpy8I GTNNAC 1 cut(s) 115
HpyCH4V TGCA 1 cut(s) 137
HpyF3I CTNAG 2 cut(s) 93, 281
Hsp92II CATG 1 cut(s) 52
LpnPI CCDG 2 cut(s) 27, 48
Lsp1109I GCAGC 2 cut(s) 163, 289
LweI GCATC 1 cut(s) 124
MaeI CTAG 1 cut(s) 237
MaeIII GTNAC 1 cut(s) 200
MboII GAAGA 1 cut(s) 113
MlyI GAGTC 1 cut(s) 83
MnlI CCTC 6 cut(s) 97, 114, 144, 191, 235, 275
Mph1103I ATGCAT 1 cut(s) 139
MseI TTAA 1 cut(s) 140
NlaIII CATG 1 cut(s) 52
NmuCI GTSAC 1 cut(s) 200
NsiI ATGCAT 1 cut(s) 139
NspV TTCGAA 1 cut(s) 170
PkrI GCNGC 2 cut(s) 178, 279
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
PsiI TTATAA 1 cut(s) 194
PspEI GGTNACC 1 cut(s) 200
RsaI GTAC 1 cut(s) 81
RsaNI GTAC 1 cut(s) 80
SaqAI TTAA 1 cut(s) 140
SatI GCNGC 2 cut(s) 177, 278
SchI GAGTC 1 cut(s) 83
SetI ASST 6 cut(s) 39, 94, 155, 178, 202, 282
SfaNI GCATC 1 cut(s) 124
SfuI TTCGAA 1 cut(s) 170
SgeI CNNG 8 cut(s) 46, 50, 54, 61, 75, 130, 244, 249
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
SspMI CTAG 1 cut(s) 237
TaqI TCGA 2 cut(s) 87, 170
Tru1I TTAA 1 cut(s) 140
Tru9I TTAA 1 cut(s) 140
TseFI GTSAC 1 cut(s) 200
TseI GCWGC 2 cut(s) 176, 277
Tsp45I GTSAC 1 cut(s) 200
XspI CTAG 1 cut(s) 237
Zsp2I ATGCAT 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.