Rmu_sc0004693.1_g000001

DUF1771

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004693.1
Physical Location & Seq
Reverse (-)
3024 .. 3419
396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004693.1_g000001.1.cds

Sequence Viewer

Length: 396 bp
atggataataatttatatagaccaaaaccttctaatggtgctggagatgtgaaactgactattaacagtttggagtttgcacccattgaacctaagtgggaagaggatgatgtttacttgaggatacgaatagatgcattaaggatgatgaggtcaatgtctcagtattcgaaagctgccactaatgcctttataagaggtgaccattattatgctcaacaacagtcaatcaaggctagaaaggaatggttagctgctgaaagccacaataacaaggcagctaagcaaattttgagtatcagaaattccaaaaatgatgtttggatattagatttacatggtcttcatgcattagaagcaatttgtgcgttgcaagaagtgatactttctgactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

131

Amino Acids

15.0

Weight (kDa)

6.91

Isoelectric Point (pI)

52.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 194
AcsI RAATTY 2 cut(s) 288, 304
AfiI CCNNNNNNNGG 1 cut(s) 35
AgsI TTSAA 1 cut(s) 89
AluBI AGCT 3 cut(s) 176, 254, 281
AluI AGCT 3 cut(s) 176, 254, 281
Alw26I GTCTC 1 cut(s) 165
ApeKI GCWGC 3 cut(s) 176, 254, 278
ApoI RAATTY 2 cut(s) 288, 304
AsuHPI GGTGA 1 cut(s) 212
AsuII TTCGAA 1 cut(s) 170
BbsI GAAGAC 1 cut(s) 335
BbvI GCAGC 3 cut(s) 163, 241, 290
BciVI GTATCC 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 165
BfaI CTAG 2 cut(s) 237, 394
BfuI GTATCC 1 cut(s) 117
BisI GCNGC 3 cut(s) 177, 255, 279
BlpI GCTNAGC 1 cut(s) 282
BlsI GCNGC 3 cut(s) 178, 256, 280
BmsI GCATC 1 cut(s) 124
BpiI GAAGAC 1 cut(s) 335
BpmI CTGGAG 1 cut(s) 63
Bpu1102I GCTNAGC 1 cut(s) 282
Bpu14I TTCGAA 1 cut(s) 170
BpuEI CTTGAG 1 cut(s) 139
Bsc4I CCNNNNNNNGG 1 cut(s) 35
BseGI GGATG 2 cut(s) 112, 150
BseLI CCNNNNNNNGG 1 cut(s) 35
BseMII CTCAG 1 cut(s) 176
BseXI GCAGC 3 cut(s) 163, 241, 290
BslI CCNNNNNNNGG 1 cut(s) 35
BsmAI GTCTC 1 cut(s) 165
Bsp119I TTCGAA 1 cut(s) 170
Bsp1720I GCTNAGC 1 cut(s) 282
BspCNI CTCAG 1 cut(s) 175
BspT104I TTCGAA 1 cut(s) 170
Bst4CI ACNGT 2 cut(s) 68, 225
Bst6I CTCTTC 1 cut(s) 96
BstAPI GCANNNNNTGC 1 cut(s) 365
BstBI TTCGAA 1 cut(s) 170
BstDEI CTNAG 3 cut(s) 93, 162, 282
BstEII GGTNACC 1 cut(s) 200
BstF5I GGATG 2 cut(s) 112, 150
BstMAI GTCTC 1 cut(s) 165
BstMWI GCNNNNNNNGC 3 cut(s) 185, 356, 365
BstPI GGTNACC 1 cut(s) 200
BstV1I GCAGC 3 cut(s) 163, 241, 290
BstV2I GAAGAC 1 cut(s) 335
BsuI GTATCC 1 cut(s) 117
BtsCI GGATG 2 cut(s) 112, 150
CviAII CATG 2 cut(s) 338, 347
CviJI RGCY 5 cut(s) 176, 236, 254, 264, 281
CviKI_1 RGCY 5 cut(s) 176, 236, 254, 264, 281
DdeI CTNAG 3 cut(s) 93, 162, 282
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
Eco91I GGTNACC 1 cut(s) 200
EcoO65I GGTNACC 1 cut(s) 200
EcoT22I ATGCAT 2 cut(s) 139, 352
FaeI CATG 2 cut(s) 341, 350
FaiI YATR 6 cut(s) 16, 18, 194, 213, 339, 348
FalI AAGNNNNNCTT 1 cut(s) 369
FatI CATG 2 cut(s) 337, 346
Fnu4HI GCNGC 3 cut(s) 177, 255, 279
FokI GGATG 2 cut(s) 119, 157
Fsp4HI GCNGC 3 cut(s) 177, 255, 279
FspBI CTAG 2 cut(s) 237, 394
GluI GCNGC 3 cut(s) 177, 255, 279
GsuI CTGGAG 1 cut(s) 63
Hin1II CATG 2 cut(s) 341, 350
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 2 cut(s) 302, 391
Hpy8I GTNNAC 1 cut(s) 115
HpyAV CCTTC 1 cut(s) 39
HpyCH4III ACNGT 2 cut(s) 68, 225
HpyCH4V TGCA 4 cut(s) 80, 137, 350, 373
HpyF10VI GCNNNNNNNGC 3 cut(s) 185, 356, 365
HpyF3I CTNAG 3 cut(s) 93, 162, 282
Hsp92II CATG 2 cut(s) 341, 350
LpnPI CCDG 1 cut(s) 27
Lsp1109I GCAGC 3 cut(s) 163, 241, 290
LweI GCATC 1 cut(s) 124
MaeI CTAG 2 cut(s) 237, 394
MaeIII GTNAC 1 cut(s) 200
MboII GAAGA 2 cut(s) 113, 335
MluCI AATT 4 cut(s) 10, 288, 304, 360
MnlI CCTC 4 cut(s) 97, 114, 144, 191
Mph1103I ATGCAT 2 cut(s) 139, 352
MseI TTAA 2 cut(s) 63, 140
MslI CAYNNNNRTG 1 cut(s) 210
MwoI GCNNNNNNNGC 3 cut(s) 185, 356, 365
NlaIII CATG 2 cut(s) 341, 350
NmuCI GTSAC 1 cut(s) 200
NsiI ATGCAT 2 cut(s) 139, 352
NspV TTCGAA 1 cut(s) 170
PkrI GCNGC 3 cut(s) 178, 256, 280
PsiI TTATAA 1 cut(s) 194
PspEI GGTNACC 1 cut(s) 200
RseI CAYNNNNRTG 1 cut(s) 210
SaqAI TTAA 2 cut(s) 63, 140
SatI GCNGC 3 cut(s) 177, 255, 279
SetI ASST 7 cut(s) 31, 94, 155, 178, 202, 256, 283
SfaNI GCATC 1 cut(s) 124
SfuI TTCGAA 1 cut(s) 170
SgeI CNNG 8 cut(s) 54, 130, 244, 249, 286, 350, 359, 386
SmiMI CAYNNNNRTG 1 cut(s) 210
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
Sse9I AATT 4 cut(s) 10, 288, 304, 360
SspMI CTAG 2 cut(s) 237, 394
TaaI ACNGT 2 cut(s) 68, 225
TaqI TCGA 1 cut(s) 170
TasI AATT 4 cut(s) 10, 288, 304, 360
Tru1I TTAA 2 cut(s) 63, 140
Tru9I TTAA 2 cut(s) 63, 140
TseFI GTSAC 1 cut(s) 200
TseI GCWGC 3 cut(s) 176, 254, 278
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 1 cut(s) 335
XapI RAATTY 2 cut(s) 288, 304
XspI CTAG 2 cut(s) 237, 394
Zsp2I ATGCAT 2 cut(s) 139, 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.