Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009800

Physical Location & Seq

Genomic Coordinates Reverse (-)

18845435 .. 18846895

Gene Structure 1461 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G181600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1461 bp

ATGGTAGAGTTTCATGGAGAAGTTGATCCTCCAGGGCTCGGAGTGCTAGCAGAAGATGAAGAAGAAGCTGTAGACATCAGCTATGGTGAGCTCAAGAAACGAATGTGGAAAGATAATATGCGGTTACGAAAGTTCAAGGAGGATAGAAAAATCATAGAAGAAGAAGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCCGAGACCTTAGCAAAACAAGAGGTGTCTCGTCGGAAGAAAATGGCAAGAGCCCAAGATTCAATACTCAAGTACATGGTGAAAATCATGGAGGTTTGCAAAGGAAAGGGCTTTGTGTATGGGATTGTGCCTGAGAAGGGGAAGCCAGTGACAGGGTCCTCTGATAGCTTGAGAGAGTGGTGGAAGGACAAAGTGATATTTAACCGAAATGCCCCAACTGCCATAGCTGAGTACTTGCCAGCTTTGATTTTTGAGCAAGGTGAATTGGACCATGGCTCTTATGCTCATCTTCTTCATGAACTGCAAGACACTACTTTGGGGTCTCTGCTTTCTGCTCTGATGCAGCGCTGTGTGCCTGCACAGAGGAGGTTCCCATTGGAGAAGGGCTTGGCTCCTCCATGGTGGCCTACAGGGGAGGAGCTTTGGTGGGGTGACCAAGGGGTTTCTATAGATCATGGTGCTCCTCCTTATAGGAAGCCTCATGATCTTAAAAAGGCTTGGAAAGTGAGTGTCTTGGCTGCTGTGATCAAGCACATGGCTCCTAATTCAGATAGGATGAGAAGGCTTGTGAGGCAGAGCAAGTGTTTGCAAGATAAAATGACTGCTAAGGAGACTGCTATTTGGTCAAAAGTGGTCAATCAAGAAGAAGTCCTTCTGCAACTTACTGAGACTTGCCTCAAAATCTCTGACTCAAATGAAAAGGAGGATCAGAAAGAAAGCCCTTCTGGCCTTAGTCAAATCAAAGGCAAGAATAATGGGAAGCGGATGTGCAGCTTGCCCAGCAGTGAAAAGAGGAAGAACAGCATCTTTGATGAAGAGGCTTGGCAAAATCGTCAGGGCTTGAAGAGTTCTGAGTTGGGTTTAGGGTTTGTGTATAAGAAATCGAAGGTAGACCATGAATCTGCATTATGTGCTTCTGGTTTATTGGCTGAGGGGAAATTTCCTTTGTTTGATGAATTCCCTGTTGATACTGGTGTTACGAGTATGGTGGATTGGATTAATATGGAGCTGCAGAAGGCCAATCAGATTGGTCAGAACAGTGGTGCACTTGTAATTAATGGTCAAGTTGGGGGTGAGGTTTCTGACACTAAAGTGGGAGACTATGGAGCAAGCTATTGGGGAGGTGGTATTGAAGATCTGGCTATAGATAGAGCATTTGATATCCAAAGGGGAAATATGGATTTAAATCTTTGTTCAGAAGAAGAAATCTCACATAGCCAAGAATCAACTTCAATTTGGGATTTGGGATATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0080167 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

EIN3

Protein Analysis

487

Amino Acids

54.83

Weight (kDa)

5.06

Isoelectric Point (pI)

47.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10120 AT5G65100
fragaria_vesca	FvH4_1g21280
malus_domestica	MD01G1025900.v1.1 MD15G1327300.v1.1
prunus_persica	Prupe.6G181600_v2.0.a1
pyrus_communis	pycom395g00020
rosa_chinensis	RchiOBHm_Chr2g0115111
rosa_laevigata	RLG00000018159
rosa_multiflora	Rmu_sc0002784.1_g000010
rosa_roxburghii	Rroxscaffold_2G00130590
rosa_rugosa	Rorug02G0193600 Rorug02G0193700
rosa_samantha	Rh2AG252000 Rh2AG252100 Rh2BG261600 Rh2BG261700 Rh2CG256600 Rh2CG256700 Rh2DG260200 Rh2DG260300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	72, 1095
AciI	CCGC	2 cut(s)	121, 967
AclWI	GGATC	2 cut(s)	20, 918
AcsI	RAATTY	2 cut(s)	1142, 1160
AfaI	GTAC	2 cut(s)	278, 437
AfeI	AGCGCT	1 cut(s)	551
AfiI	CCNNNNNNNGG	3 cut(s)	38, 341, 356
AgsI	TTSAA	5 cut(s)	136, 267, 1048, 1337, 1437
AjnI	CCWGG	1 cut(s)	31
AleI	CACNNNNGTG	1 cut(s)	1295
Alw21I	GWGCWC	3 cut(s)	93, 667, 1252
Alw26I	GTCTC	6 cut(s)	203, 237, 531, 809, 866, 1296
Alw44I	GTGCAC	1 cut(s)	1248
AlwI	GGATC	2 cut(s)	20, 918
Aor51HI	AGCGCT	1 cut(s)	551
AoxI	GGCC	3 cut(s)	608, 931, 1221
ApaLI	GTGCAC	1 cut(s)	1248
ApeKI	GCWGC	4 cut(s)	547, 722, 975, 1213
ApoI	RAATTY	2 cut(s)	1142, 1160
AseI	ATTAAT	2 cut(s)	1203, 1260
Asp700I	GAANNNNTTC	1 cut(s)	855
AspLEI	GCGC	1 cut(s)	552
AspS9I	GGNCC	2 cut(s)	360, 472
AsuHPI	GGTGA	5 cut(s)	98, 295, 476, 647, 1289
AsuNHI	GCTAGC	1 cut(s)	46
AvaII	GGWCC	2 cut(s)	360, 472
BaeGI	GKGCMC	1 cut(s)	1252
BaeI	ACNNNNGTAYC	2 cut(s)	1164, 1197
BanII	GRGCYC	3 cut(s)	39, 93, 259
Bbv12I	GWGCWC	3 cut(s)	93, 667, 1252
BbvCI	CCTCAGC	1 cut(s)	1134
BbvI	GCAGC	4 cut(s)	559, 709, 987, 1200
BciT130I	CCWGG	1 cut(s)	33
BclI	TGATCA	1 cut(s)	729
BcoDI	GTCTC	6 cut(s)	203, 237, 531, 809, 866, 1296
BfaI	CTAG	1 cut(s)	47
BfmI	CTRYAG	5 cut(s)	69, 612, 651, 1214, 1347
BfoI	RGCGCY	1 cut(s)	553
BglI	GCCNNNNNGGC	1 cut(s)	930
BglII	AGATCT	1 cut(s)	1339
BisI	GCNGC	4 cut(s)	548, 723, 976, 1214
BlsI	GCNGC	4 cut(s)	549, 724, 977, 1215
BmcAI	AGTACT	1 cut(s)	437
Bme1390I	CCNGG	1 cut(s)	33
Bme18I	GGWCC	2 cut(s)	360, 472
BmgT120I	GGNCC	2 cut(s)	360, 472
BmiI	GGNNCC	4 cut(s)	361, 575, 597, 744
BmrFI	CCNGG	1 cut(s)	33
BmsI	GCATC	2 cut(s)	534, 1017
BmtI	GCTAGC	1 cut(s)	50
BpmI	CTGGAG	1 cut(s)	15
Bpu10I	CCTNAGC	3 cut(s)	214, 810, 1134
BpuEI	CTTGAG	3 cut(s)	77, 257, 394
BsaBI	GATNNNNATC	1 cut(s)	1389
BsaI	GGTCTC	2 cut(s)	203, 531
BsaJI	CCNNGG	4 cut(s)	32, 475, 602, 640
BsaXI	ACNNNNNCTCC	2 cut(s)	614, 644
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 341, 356
Bse1I	ACTGG	2 cut(s)	350, 1180
Bse8I	GATNNNNATC	1 cut(s)	1389
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	4 cut(s)	32, 475, 602, 640
BseGI	GGATG	2 cut(s)	765, 975
BseJI	GATNNNNATC	1 cut(s)	1389
BseLI	CCNNNNNNNGG	3 cut(s)	38, 341, 356
BseMII	CTCAG	5 cut(s)	327, 423, 861, 1047, 1125
BseNI	ACTGG	2 cut(s)	350, 1180
BseRI	GAGGAG	4 cut(s)	583, 588, 635, 657
BseSI	GKGCMC	1 cut(s)	1252
BseXI	GCAGC	4 cut(s)	559, 709, 987, 1200
BseYI	CCCAGC	1 cut(s)	983
BsgI	GTGCAG	2 cut(s)	546, 994
BshFI	GGCC	3 cut(s)	610, 933, 1223
BsiHKAI	GWGCWC	3 cut(s)	93, 667, 1252
BslI	CCNNNNNNNGG	3 cut(s)	38, 341, 356
BsmAI	GTCTC	6 cut(s)	203, 237, 531, 809, 866, 1296
BsnI	GGCC	3 cut(s)	610, 933, 1223
Bso31I	GGTCTC	2 cut(s)	203, 531
Bsp1286I	GDGCHC	5 cut(s)	39, 93, 259, 667, 1252
Bsp143I	GATC	6 cut(s)	25, 655, 688, 729, 910, 1339
Bsp19I	CCATGG	2 cut(s)	475, 602
BspACI	CCGC	2 cut(s)	121, 967
BspANI	GGCC	3 cut(s)	610, 933, 1223
BspCNI	CTCAG	5 cut(s)	328, 424, 862, 1048, 1126
BspHI	TCATGA	2 cut(s)	499, 685
BspLI	GGNNCC	4 cut(s)	361, 575, 597, 744
BspMAI	CTGCAG	1 cut(s)	1218
BspOI	GCTAGC	1 cut(s)	50
BspPI	GGATC	2 cut(s)	20, 918
BspTNI	GGTCTC	2 cut(s)	203, 531
BsrI	ACTGG	2 cut(s)	350, 1180
BssECI	CCNNGG	4 cut(s)	32, 475, 602, 640
BssMI	GATC	6 cut(s)	25, 655, 688, 729, 910, 1339
BssT1I	CCWWGG	3 cut(s)	475, 602, 640
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	1 cut(s)	1244
Bst6I	CTCTTC	2 cut(s)	1014, 1043
BstAPI	GCANNNNNTGC	1 cut(s)	1115
BstC8I	GCNNGC	5 cut(s)	48, 444, 561, 980, 1315
BstDEI	CTNAG	8 cut(s)	214, 336, 432, 810, 870, 935, 1056, 1134
BstDSI	CCRYGG	2 cut(s)	475, 602
BstEII	GGTNACC	1 cut(s)	635
BstF5I	GGATG	2 cut(s)	765, 975
BstH2I	RGCGCY	1 cut(s)	553
BstHHI	GCGC	1 cut(s)	552
BstKTI	GATC	6 cut(s)	28, 658, 691, 732, 913, 1342
BstMAI	GTCTC	6 cut(s)	203, 237, 531, 809, 866, 1296
BstMBI	GATC	6 cut(s)	25, 655, 688, 729, 910, 1339
BstMWI	GCNNNNNNNGC	7 cut(s)	43, 422, 556, 775, 930, 984, 1115
BstNI	CCWGG	1 cut(s)	33
BstPI	GGTNACC	1 cut(s)	635
BstSCI	CCNGG	1 cut(s)	31
BstSFI	CTRYAG	5 cut(s)	69, 612, 651, 1214, 1347
BstSLI	GKGCMC	1 cut(s)	1252
BstV1I	GCAGC	4 cut(s)	559, 709, 987, 1200
BstX2I	RGATCY	1 cut(s)	1339
BstYI	RGATCY	1 cut(s)	1339
BsuRI	GGCC	3 cut(s)	610, 933, 1223
BtgI	CCRYGG	2 cut(s)	475, 602
BtsCI	GGATG	2 cut(s)	765, 975
BtsI	GCAGTG	1 cut(s)	994
BtsIMutI	CAGTG	3 cut(s)	357, 994, 1249
Cac8I	GCNNGC	5 cut(s)	48, 444, 561, 980, 1315
CciI	TCATGA	2 cut(s)	499, 685
CfoI	GCGC	1 cut(s)	552
Cfr13I	GGNCC	2 cut(s)	360, 472
Csp6I	GTAC	2 cut(s)	277, 436
CviQI	GTAC	2 cut(s)	277, 436
DdeI	CTNAG	8 cut(s)	214, 336, 432, 810, 870, 935, 1056, 1134
DpnI	GATC	6 cut(s)	27, 657, 690, 731, 912, 1341
DpnII	GATC	6 cut(s)	25, 655, 688, 729, 910, 1339
DraI	TTTAAA	1 cut(s)	1389
Eam1104I	CTCTTC	2 cut(s)	1014, 1043
EarI	CTCTTC	2 cut(s)	1014, 1043
Ecl136II	GAGCTC	1 cut(s)	91
Eco130I	CCWWGG	3 cut(s)	475, 602, 640
Eco24I	GRGCYC	3 cut(s)	39, 93, 259
Eco31I	GGTCTC	2 cut(s)	203, 531
Eco32I	GATATC	1 cut(s)	1366
Eco47I	GGWCC	2 cut(s)	360, 472
Eco47III	AGCGCT	1 cut(s)	551
Eco53kI	GAGCTC	1 cut(s)	91
Eco91I	GGTNACC	1 cut(s)	635
EcoICRI	GAGCTC	1 cut(s)	91
EcoO109I	RGGNCCY	1 cut(s)	360
EcoO65I	GGTNACC	1 cut(s)	635
EcoRI	GAATTC	1 cut(s)	1160
EcoRII	CCWGG	1 cut(s)	31
EcoRV	GATATC	1 cut(s)	1366
EcoT14I	CCWWGG	3 cut(s)	475, 602, 640
EcoT38I	GRGCYC	3 cut(s)	39, 93, 259
ErhI	CCWWGG	3 cut(s)	475, 602, 640
FalI	AAGNNNNNCTT	2 cut(s)	840, 872
FbaI	TGATCA	1 cut(s)	729
FblI	GTMKAC	2 cut(s)	72, 1095
Fnu4HI	GCNGC	4 cut(s)	548, 723, 976, 1214
FokI	GGATG	2 cut(s)	772, 982
FriOI	GRGCYC	3 cut(s)	39, 93, 259
Fsp4HI	GCNGC	4 cut(s)	548, 723, 976, 1214
FspBI	CTAG	1 cut(s)	47
GlaI	GCGC	1 cut(s)	551
GluI	GCNGC	4 cut(s)	548, 723, 976, 1214
GsaI	CCCAGC	1 cut(s)	987
GsuI	CTGGAG	1 cut(s)	15
HaeII	RGCGCY	1 cut(s)	553
HaeIII	GGCC	3 cut(s)	610, 933, 1223
HhaI	GCGC	1 cut(s)	552
Hin6I	GCGC	1 cut(s)	550
HinP1I	GCGC	1 cut(s)	550
HinfI	GANTC	4 cut(s)	263, 893, 1103, 1427
HphI	GGTGA	5 cut(s)	98, 295, 476, 647, 1289
Hpy166II	GTNNAC	3 cut(s)	73, 1096, 1250
Hpy188III	TCNNGA	4 cut(s)	94, 500, 686, 845
Hpy8I	GTNNAC	3 cut(s)	73, 1096, 1250
Hpy99I	CGWCG	1 cut(s)	240
HpyAV	CCTTC	9 cut(s)	158, 334, 382, 580, 759, 866, 936, 1084, 1213
HpyCH4III	ACNGT	1 cut(s)	1244
HpyF10VI	GCNNNNNNNGC	7 cut(s)	43, 422, 556, 775, 930, 984, 1115
HpyF3I	CTNAG	8 cut(s)	214, 336, 432, 810, 870, 935, 1056, 1134
HspAI	GCGC	1 cut(s)	550
Ksp22I	TGATCA	1 cut(s)	729
Kzo9I	GATC	6 cut(s)	25, 655, 688, 729, 910, 1339
LmnI	GCTCC	6 cut(s)	601, 622, 670, 748, 1210, 1310
Lsp1109I	GCAGC	4 cut(s)	559, 709, 987, 1200
LweI	GCATC	2 cut(s)	534, 1017
MaeI	CTAG	1 cut(s)	47
MaeIII	GTNAC	4 cut(s)	123, 352, 635, 1180
MalI	GATC	6 cut(s)	27, 657, 690, 731, 912, 1341
MboI	GATC	6 cut(s)	25, 655, 688, 729, 910, 1339
MflI	RGATCY	1 cut(s)	1339
MhlI	GDGCHC	5 cut(s)	39, 93, 259, 667, 1252
MluCI	AATT	6 cut(s)	467, 748, 1142, 1160, 1257, 1437
MlyI	GAGTC	1 cut(s)	887
MmeI	TCCRAC	1 cut(s)	218
MroXI	GAANNNNTTC	1 cut(s)	855
MseI	TTAA	5 cut(s)	405, 693, 1203, 1260, 1388
MslI	CAYNNNNRTG	1 cut(s)	1295
MspR9I	CCNGG	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	7 cut(s)	43, 422, 556, 775, 930, 984, 1115
NcoI	CCATGG	2 cut(s)	475, 602
NdeII	GATC	6 cut(s)	25, 655, 688, 729, 910, 1339
NheI	GCTAGC	1 cut(s)	46
NlaIV	GGNNCC	4 cut(s)	361, 575, 597, 744
NmeAIII	GCCGAG	1 cut(s)	232
NmuCI	GTSAC	2 cut(s)	352, 635
OliI	CACNNNNGTG	1 cut(s)	1295
PagI	TCATGA	2 cut(s)	499, 685
PdmI	GAANNNNTTC	1 cut(s)	855
PfeI	GAWTC	3 cut(s)	263, 1103, 1427
PflFI	GACNNNGTC	1 cut(s)	358
PkrI	GCNGC	4 cut(s)	549, 724, 977, 1215
PleI	GAGTC	1 cut(s)	887
PpsI	GAGTC	1 cut(s)	887
PpuMI	RGGWCCY	1 cut(s)	360
PshBI	ATTAAT	2 cut(s)	1203, 1260
Psp124BI	GAGCTC	1 cut(s)	93
Psp5II	RGGWCCY	1 cut(s)	360
Psp6I	CCWGG	1 cut(s)	31
PspEI	GGTNACC	1 cut(s)	635
PspFI	CCCAGC	1 cut(s)	983
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	4 cut(s)	361, 575, 597, 744
PspPI	GGNCC	2 cut(s)	360, 472
PspPPI	RGGWCCY	1 cut(s)	360
PstI	CTGCAG	1 cut(s)	1218
PsuI	RGATCY	1 cut(s)	1339
PsyI	GACNNNGTC	1 cut(s)	358
RsaI	GTAC	2 cut(s)	278, 437
RsaNI	GTAC	2 cut(s)	277, 436
RseI	CAYNNNNRTG	1 cut(s)	1295
SacI	GAGCTC	1 cut(s)	93
SaqAI	TTAA	5 cut(s)	405, 693, 1203, 1260, 1388
SatI	GCNGC	4 cut(s)	548, 723, 976, 1214
Sau3AI	GATC	6 cut(s)	25, 655, 688, 729, 910, 1339
Sau96I	GGNCC	2 cut(s)	360, 472
ScaI	AGTACT	1 cut(s)	437
SchI	GAGTC	1 cut(s)	887
ScrFI	CCNGG	1 cut(s)	33
SduI	GDGCHC	5 cut(s)	39, 93, 259, 667, 1252
SfaNI	GCATC	2 cut(s)	534, 1017
SfcI	CTRYAG	5 cut(s)	69, 612, 651, 1214, 1347
SinI	GGWCC	2 cut(s)	360, 472
SmiI	ATTTAAAT	1 cut(s)	1389
SmiMI	CAYNNNNRTG	1 cut(s)	1295
SmlI	CTYRAG	3 cut(s)	92, 272, 373
SmoI	CTYRAG	3 cut(s)	92, 272, 373
Sse9I	AATT	6 cut(s)	467, 748, 1142, 1160, 1257, 1437
SsiI	CCGC	2 cut(s)	121, 967
SspMI	CTAG	1 cut(s)	47
SstI	GAGCTC	1 cut(s)	93
StyD4I	CCNGG	1 cut(s)	31
StyI	CCWWGG	3 cut(s)	475, 602, 640
SwaI	ATTTAAAT	1 cut(s)	1389
TaaI	ACNGT	1 cut(s)	1244
TaqI	TCGA	1 cut(s)	1088
TasI	AATT	6 cut(s)	467, 748, 1142, 1160, 1257, 1437
TatI	WGTACW	2 cut(s)	276, 435
TfiI	GAWTC	3 cut(s)	263, 1103, 1427
Tru1I	TTAA	5 cut(s)	405, 693, 1203, 1260, 1388
Tru9I	TTAA	5 cut(s)	405, 693, 1203, 1260, 1388
TscAI	CASTG	3 cut(s)	357, 994, 1249
TseFI	GTSAC	2 cut(s)	352, 635
TseI	GCWGC	4 cut(s)	547, 722, 975, 1213
Tsp45I	GTSAC	2 cut(s)	352, 635
TspDTI	ATGAA	7 cut(s)	72, 488, 516, 915, 1032, 1116, 1173
TspRI	CASTG	3 cut(s)	357, 994, 1249
Tth111I	GACNNNGTC	1 cut(s)	358
VneI	GTGCAC	1 cut(s)	1248
VpaK11BI	GGWCC	2 cut(s)	360, 472
VspI	ATTAAT	2 cut(s)	1203, 1260
XapI	RAATTY	2 cut(s)	1142, 1160
XmiI	GTMKAC	2 cut(s)	72, 1095
XmnI	GAANNNNTTC	1 cut(s)	855
XspI	CTAG	1 cut(s)	47
ZrmI	AGTACT	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.