Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009800

Physical Location & Seq

Genomic Coordinates Forward (+)

27948148 .. 27948675

Gene Structure 528 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG261700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGTTCCTAATTTGGACAGGGTTAGAAGGCTAGTCAAGCAGTCCAAGTGCTTGCAAGATAAAATGACTGCTAAGGAGACCGCGATTTGGTCAAAAGTGGTTAACCAAGAAGAAGCAATTCTCCAACTTATTACTGATCAGAAACCAATCAGCTGCCCCGAAATCGCGGGTACCACGGCCTTACATTCTAACGAAAAGAGGAAGTGCATGTTTGATGACGATTGCTCTGAATTGCATGTTCTTCCAAAAACTTCAAACAGTGAATTAGGTTTAGGCTTTGTGGATAAGAAATCAAGGACAGGCCATGATCAAAATAATGTTTCTGATTCAATGCGGGAGGTTGACACAAGTTCTTCGTATGATCATTCCTCAAATGATTCAGGATTCGAAAGTGTGGTGGAATGGATTAATATGGAGCTACAAAAGGCCAGCATAAACGAAGTCGGTGGAGTGGTCCGGCCTGTCTGGTTTTCCAAATACTTACTGGGAATGTGGAATGGAAGAATTAGCTTTGGATGCAGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0080167 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

EIN3

Protein Analysis

175

Amino Acids

19.66

Weight (kDa)

5.82

Isoelectric Point (pI)

48.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EIN3_DNA-bd	PF04873	1 - 38	1.1e-09	Ethylene insensitive 3, DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0009800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10120 AT5G65100
fragaria_vesca	FvH4_1g21280
malus_domestica	MD01G1025900.v1.1 MD15G1327300.v1.1
prunus_persica	Prupe.6G181600_v2.0.a1
pyrus_communis	pycom395g00020
rosa_chinensis	RchiOBHm_Chr2g0115111
rosa_laevigata	RLG00000018159
rosa_multiflora	Rmu_sc0002784.1_g000010
rosa_roxburghii	Rroxscaffold_2G00130590
rosa_rugosa	Rorug02G0193600 Rorug02G0193700
rosa_samantha	Rh2AG252000 Rh2AG252100 Rh2BG261600 Rh2BG261700 Rh2CG256600 Rh2CG256700 Rh2DG260200 Rh2DG260300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	170
AccB1I	GGYRCC	1 cut(s)	170
AccII	CGCG	2 cut(s)	83, 167
AciI	CCGC	3 cut(s)	81, 167, 334
AfaI	GTAC	1 cut(s)	172
AfiI	CCNNNNNNNGG	1 cut(s)	87
AgsI	TTSAA	2 cut(s)	255, 330
AluBI	AGCT	3 cut(s)	153, 418, 510
AluI	AGCT	3 cut(s)	153, 418, 510
Alw26I	GTCTC	1 cut(s)	71
AoxI	GGCC	4 cut(s)	177, 301, 426, 458
ApeKI	GCWGC	2 cut(s)	153, 519
AseI	ATTAAT	1 cut(s)	408
Asp700I	GAANNNNTTC	1 cut(s)	117
Asp718I	GGTACC	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	454
AsuII	TTCGAA	1 cut(s)	387
AvaII	GGWCC	1 cut(s)	454
BanI	GGYRCC	1 cut(s)	170
BbvI	GCAGC	1 cut(s)	140
BceAI	ACGGC	1 cut(s)	192
BclI	TGATCA	3 cut(s)	136, 307, 361
BcoDI	GTCTC	1 cut(s)	71
BfaI	CTAG	1 cut(s)	32
BisI	GCNGC	2 cut(s)	154, 520
BlsI	GCNGC	2 cut(s)	155, 521
Bme18I	GGWCC	1 cut(s)	454
BmgT120I	GGNCC	1 cut(s)	454
BmiI	GGNNCC	2 cut(s)	6, 172
BmrI	ACTGGG	1 cut(s)	494
BmsI	GCATC	1 cut(s)	506
BmuI	ACTGGG	1 cut(s)	494
Bpu10I	CCTNAGC	1 cut(s)	72
Bpu14I	TTCGAA	1 cut(s)	387
BsaI	GGTCTC	1 cut(s)	71
BsaJI	CCNNGG	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
Bse1I	ACTGG	1 cut(s)	489
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	1 cut(s)	521
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseNI	ACTGG	1 cut(s)	489
BseXI	GCAGC	1 cut(s)	140
Bsh1236I	CGCG	2 cut(s)	83, 167
BshFI	GGCC	4 cut(s)	179, 303, 428, 460
BshNI	GGYRCC	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	457
BslI	CCNNNNNNNGG	1 cut(s)	87
BsmAI	GTCTC	1 cut(s)	71
BsnI	GGCC	4 cut(s)	179, 303, 428, 460
Bso31I	GGTCTC	1 cut(s)	71
Bsp119I	TTCGAA	1 cut(s)	387
Bsp143I	GATC	3 cut(s)	136, 307, 361
BspACI	CCGC	3 cut(s)	81, 167, 334
BspANI	GGCC	4 cut(s)	179, 303, 428, 460
BspFNI	CGCG	2 cut(s)	83, 167
BspLI	GGNNCC	2 cut(s)	6, 172
BspT104I	TTCGAA	1 cut(s)	387
BspT107I	GGYRCC	1 cut(s)	170
BspTNI	GGTCTC	1 cut(s)	71
BsrI	ACTGG	1 cut(s)	489
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	3 cut(s)	136, 307, 361
Bst4CI	ACNGT	1 cut(s)	260
BstBI	TTCGAA	1 cut(s)	387
BstC8I	GCNNGC	2 cut(s)	53, 430
BstDEI	CTNAG	1 cut(s)	72
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	1 cut(s)	521
BstFNI	CGCG	2 cut(s)	83, 167
BstKTI	GATC	3 cut(s)	139, 310, 364
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	3 cut(s)	136, 307, 361
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 516
BstNSI	RCATGY	2 cut(s)	211, 239
BstUI	CGCG	2 cut(s)	83, 167
BstV1I	GCAGC	1 cut(s)	140
BsuRI	GGCC	4 cut(s)	179, 303, 428, 460
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	521
BtsIMutI	CAGTG	1 cut(s)	265
Cac8I	GCNNGC	2 cut(s)	53, 430
Cfr13I	GGNCC	1 cut(s)	454
Csp6I	GTAC	1 cut(s)	171
CviAII	CATG	3 cut(s)	208, 236, 305
CviJI	RGCY	9 cut(s)	31, 153, 179, 276, 303, 418, 428, 460, 510
CviKI_1	RGCY	9 cut(s)	31, 153, 179, 276, 303, 418, 428, 460, 510
CviQI	GTAC	1 cut(s)	171
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	3 cut(s)	138, 309, 363
DpnII	GATC	3 cut(s)	136, 307, 361
Eco31I	GGTCTC	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	454
FaeI	CATG	3 cut(s)	211, 239, 308
FaiI	YATR	6 cut(s)	209, 237, 306, 360, 413, 434
FatI	CATG	3 cut(s)	207, 235, 304
FauI	CCCGC	2 cut(s)	160, 327
FbaI	TGATCA	3 cut(s)	136, 307, 361
Fnu4HI	GCNGC	2 cut(s)	154, 520
Fsp4HI	GCNGC	2 cut(s)	154, 520
FspBI	CTAG	1 cut(s)	32
GluI	GCNGC	2 cut(s)	154, 520
HaeIII	GGCC	4 cut(s)	179, 303, 428, 460
HapII	CCGG	1 cut(s)	457
Hin1II	CATG	3 cut(s)	211, 239, 308
HincII	GTYRAC	2 cut(s)	103, 343
HindII	GTYRAC	2 cut(s)	103, 343
HinfI	GANTC	3 cut(s)	326, 377, 384
HpaI	GTTAAC	1 cut(s)	103
HpaII	CCGG	1 cut(s)	457
Hpy166II	GTNNAC	2 cut(s)	103, 343
Hpy188I	TCNGA	3 cut(s)	141, 229, 325
Hpy188III	TCNNGA	1 cut(s)	381
Hpy8I	GTNNAC	2 cut(s)	103, 343
HpyAV	CCTTC	1 cut(s)	21
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4V	TGCA	4 cut(s)	55, 207, 235, 519
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 516
HpyF3I	CTNAG	1 cut(s)	72
Hsp92II	CATG	3 cut(s)	211, 239, 308
KpnI	GGTACC	1 cut(s)	174
Ksp22I	TGATCA	3 cut(s)	136, 307, 361
KspAI	GTTAAC	1 cut(s)	103
Kzo9I	GATC	3 cut(s)	136, 307, 361
LmnI	GCTCC	1 cut(s)	415
LpnPI	CCDG	8 cut(s)	4, 285, 366, 442, 451, 470, 470, 474
Lsp1109I	GCAGC	1 cut(s)	140
LweI	GCATC	1 cut(s)	506
MaeI	CTAG	1 cut(s)	32
MalI	GATC	3 cut(s)	138, 309, 363
MboI	GATC	3 cut(s)	136, 307, 361
MboII	GAAGA	4 cut(s)	122, 233, 345, 513
MluCI	AATT	5 cut(s)	10, 117, 230, 263, 504
MmeI	TCCRAC	1 cut(s)	148
MnlI	CCTC	3 cut(s)	192, 331, 379
MroXI	GAANNNNTTC	1 cut(s)	117
MseI	TTAA	2 cut(s)	102, 408
MspA1I	CMGCKG	1 cut(s)	153
MspI	CCGG	1 cut(s)	457
MvnI	CGCG	2 cut(s)	83, 167
MwoI	GCNNNNNNNGC	2 cut(s)	37, 516
NdeII	GATC	3 cut(s)	136, 307, 361
NlaIII	CATG	3 cut(s)	211, 239, 308
NlaIV	GGNNCC	2 cut(s)	6, 172
NspI	RCATGY	2 cut(s)	211, 239
NspV	TTCGAA	1 cut(s)	387
PdmI	GAANNNNTTC	1 cut(s)	117
PfeI	GAWTC	3 cut(s)	326, 377, 384
PkrI	GCNGC	2 cut(s)	155, 521
PshBI	ATTAAT	1 cut(s)	408
PspN4I	GGNNCC	2 cut(s)	6, 172
PspPI	GGNCC	1 cut(s)	454
PvuII	CAGCTG	1 cut(s)	153
RsaI	GTAC	1 cut(s)	172
RsaNI	GTAC	1 cut(s)	171
SaqAI	TTAA	2 cut(s)	102, 408
SatI	GCNGC	2 cut(s)	154, 520
Sau3AI	GATC	3 cut(s)	136, 307, 361
Sau96I	GGNCC	1 cut(s)	454
SetI	ASST	5 cut(s)	155, 271, 342, 420, 512
SfaNI	GCATC	1 cut(s)	506
SfuI	TTCGAA	1 cut(s)	387
SinI	GGWCC	1 cut(s)	454
Sse9I	AATT	5 cut(s)	10, 117, 230, 263, 504
SsiI	CCGC	3 cut(s)	81, 167, 334
SspMI	CTAG	1 cut(s)	32
TaaI	ACNGT	1 cut(s)	260
TaqI	TCGA	1 cut(s)	387
TasI	AATT	5 cut(s)	10, 117, 230, 263, 504
TfiI	GAWTC	3 cut(s)	326, 377, 384
Tru1I	TTAA	2 cut(s)	102, 408
Tru9I	TTAA	2 cut(s)	102, 408
TscAI	CASTG	1 cut(s)	265
TseI	GCWGC	2 cut(s)	153, 519
TspRI	CASTG	1 cut(s)	265
VpaK11BI	GGWCC	1 cut(s)	454
VspI	ATTAAT	1 cut(s)	408
XceI	RCATGY	2 cut(s)	211, 239
XcmI	CCANNNNNNNNNTGG	1 cut(s)	481
XmnI	GAANNNNTTC	1 cut(s)	117
XspI	CTAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.