Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002784.1

Orthogroup ID

OG0009800

Physical Location & Seq

Genomic Coordinates Forward (+)

43386 .. 44164

Gene Structure 779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002784.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

atggctagagctcaagattccatactcaaatacatggtgaagatcatggaagtttgccaagcacgaggcttcgtctatgggatagttccgaagaaggggaagtcgaacgctccactagcaatatccaagtatctacctgaagtgcttttggaacaagcaggtactagtgggctagatcatgacaactcttatgtccatctccttcatgacttgcaagacacgacgctggggtcgttgctttcagctttaatgcaacactgtaaacctccacagaggcggtttccgttggaaaaaggtttggctccgccgtggaaacctcatgatctcaaaaaggcttggaaagtaagtgctttggctgcagtgattaagcatatggttcctaatttggacagggttagaaggctagtcaagcagtccaagtgcttgcaagataaaatgactgctaaggagaccgcgatttggtcaaaagtggttaaccaagaagaagcaattctccaacttattactgatcagaaaccaatcagctgccccgaaatcgcgggtaccacggccttacattctaacgaaaagaggaagtgcatgtttgatgacgattgctctgaattggatcgatgctccacatgttcttccaaaaacttcaaacagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0080167 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

EIN3

Protein Analysis

215

Amino Acids

24.15

Weight (kDa)

9.15

Isoelectric Point (pI)

44.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10120 AT5G65100
fragaria_vesca	FvH4_1g21280
malus_domestica	MD01G1025900.v1.1 MD15G1327300.v1.1
prunus_persica	Prupe.6G181600_v2.0.a1
pyrus_communis	pycom395g00020
rosa_chinensis	RchiOBHm_Chr2g0115111
rosa_laevigata	RLG00000018159
rosa_multiflora	Rmu_sc0002784.1_g000010
rosa_roxburghii	Rroxscaffold_2G00130590
rosa_rugosa	Rorug02G0193600 Rorug02G0193700
rosa_samantha	Rh2AG252000 Rh2AG252100 Rh2BG261600 Rh2BG261700 Rh2CG256600 Rh2CG256700 Rh2DG260200 Rh2DG260300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	229
Acc36I	ACCTGC	1 cut(s)	149
Acc65I	GGTACC	1 cut(s)	542
AccB1I	GGYRCC	1 cut(s)	542
AccII	CGCG	2 cut(s)	455, 539
AciI	CCGC	4 cut(s)	277, 305, 453, 539
AclWI	GGATC	1 cut(s)	615
AcuI	CTGAAG	1 cut(s)	159
AfaI	GTAC	2 cut(s)	163, 544
AfiI	CCNNNNNNNGG	2 cut(s)	95, 459
AflIII	ACRYGT	1 cut(s)	620
AgsI	TTSAA	1 cut(s)	640
AhlI	ACTAGT	1 cut(s)	164
AluBI	AGCT	3 cut(s)	11, 245, 525
AluI	AGCT	3 cut(s)	11, 245, 525
Alw21I	GWGCWC	1 cut(s)	13
Alw26I	GTCTC	1 cut(s)	443
AlwI	GGATC	1 cut(s)	615
AoxI	GGCC	1 cut(s)	549
ApeKI	GCWGC	2 cut(s)	356, 525
Asp700I	GAANNNNTTC	1 cut(s)	489
Asp718I	GGTACC	1 cut(s)	542
AsuHPI	GGTGA	1 cut(s)	49
BanI	GGYRCC	1 cut(s)	542
BanII	GRGCYC	1 cut(s)	13
BauI	CACGAG	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	13
BbvI	GCAGC	2 cut(s)	343, 512
BccI	CCATC	1 cut(s)	204
BceAI	ACGGC	2 cut(s)	292, 564
BclI	TGATCA	1 cut(s)	508
BcoDI	GTCTC	1 cut(s)	443
BcuI	ACTAGT	1 cut(s)	164
BfaI	CTAG	5 cut(s)	6, 116, 165, 173, 404
BfmI	CTRYAG	1 cut(s)	357
BfuAI	ACCTGC	1 cut(s)	149
BisI	GCNGC	2 cut(s)	357, 526
BlsI	GCNGC	2 cut(s)	358, 527
BmiI	GGNNCC	3 cut(s)	303, 378, 544
BmsI	GCATC	1 cut(s)	602
Bpu10I	CCTNAGC	1 cut(s)	444
Bsa29I	ATCGAT	1 cut(s)	610
BsaI	GGTCTC	1 cut(s)	443
BsaJI	CCNNGG	2 cut(s)	308, 546
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 459
BseCI	ATCGAT	1 cut(s)	610
BseDI	CCNNGG	2 cut(s)	308, 546
BseLI	CCNNNNNNNGG	2 cut(s)	95, 459
BseXI	GCAGC	2 cut(s)	343, 512
BseYI	CCCAGC	1 cut(s)	226
Bsh1236I	CGCG	2 cut(s)	455, 539
BshFI	GGCC	1 cut(s)	551
BshNI	GGYRCC	1 cut(s)	542
BshVI	ATCGAT	1 cut(s)	610
BsiHKAI	GWGCWC	1 cut(s)	13
BslI	CCNNNNNNNGG	2 cut(s)	95, 459
BsmAI	GTCTC	1 cut(s)	443
BsnI	GGCC	1 cut(s)	551
Bso31I	GGTCTC	1 cut(s)	443
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	5 cut(s)	42, 175, 322, 508, 607
BspACI	CCGC	4 cut(s)	277, 305, 453, 539
BspANI	GGCC	1 cut(s)	551
BspDI	ATCGAT	1 cut(s)	610
BspFNI	CGCG	2 cut(s)	455, 539
BspHI	TCATGA	3 cut(s)	178, 205, 319
BspLI	GGNNCC	3 cut(s)	303, 378, 544
BspMAI	CTGCAG	1 cut(s)	361
BspMI	ACCTGC	1 cut(s)	149
BspPI	GGATC	1 cut(s)	615
BspT107I	GGYRCC	1 cut(s)	542
BspTNI	GGTCTC	1 cut(s)	443
BssECI	CCNNGG	2 cut(s)	308, 546
BssMI	GATC	5 cut(s)	42, 175, 322, 508, 607
BssSI	CACGAG	1 cut(s)	63
Bst2BI	CACGAG	1 cut(s)	63
Bst4CI	ACNGT	2 cut(s)	260, 645
BstC8I	GCNNGC	1 cut(s)	425
BstDEI	CTNAG	1 cut(s)	444
BstDSI	CCRYGG	2 cut(s)	308, 546
BstFNI	CGCG	2 cut(s)	455, 539
BstKTI	GATC	5 cut(s)	45, 178, 325, 511, 610
BstMAI	GTCTC	1 cut(s)	443
BstMBI	GATC	5 cut(s)	42, 175, 322, 508, 607
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 356, 409
BstNSI	RCATGY	2 cut(s)	583, 624
BstSFI	CTRYAG	1 cut(s)	357
BstUI	CGCG	2 cut(s)	455, 539
BstV1I	GCAGC	2 cut(s)	343, 512
Bsu15I	ATCGAT	1 cut(s)	610
BsuRI	GGCC	1 cut(s)	551
BsuTUI	ATCGAT	1 cut(s)	610
BtgI	CCRYGG	2 cut(s)	308, 546
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	2 cut(s)	256, 366
BveI	ACCTGC	1 cut(s)	149
Cac8I	GCNNGC	1 cut(s)	425
CciI	TCATGA	3 cut(s)	178, 205, 319
ClaI	ATCGAT	1 cut(s)	610
CseI	GACGC	1 cut(s)	232
Csp6I	GTAC	2 cut(s)	162, 543
CviAII	CATG	7 cut(s)	34, 46, 179, 206, 320, 580, 621
CviQI	GTAC	2 cut(s)	162, 543
DdeI	CTNAG	1 cut(s)	444
DpnI	GATC	5 cut(s)	44, 177, 324, 510, 609
DpnII	GATC	5 cut(s)	42, 175, 322, 508, 607
DrdI	GACNNNNNNGTC	1 cut(s)	229
DseDI	GACNNNNNNGTC	1 cut(s)	229
EciI	GGCGGA	1 cut(s)	294
Ecl136II	GAGCTC	1 cut(s)	11
Eco24I	GRGCYC	1 cut(s)	13
Eco31I	GGTCTC	1 cut(s)	443
Eco53kI	GAGCTC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	159
EcoICRI	GAGCTC	1 cut(s)	11
EcoT38I	GRGCYC	1 cut(s)	13
FaeI	CATG	7 cut(s)	37, 49, 182, 209, 323, 583, 624
FatI	CATG	7 cut(s)	33, 45, 178, 205, 319, 579, 620
FauI	CCCGC	1 cut(s)	532
FauNDI	CATATG	1 cut(s)	372
FbaI	TGATCA	1 cut(s)	508
Fnu4HI	GCNGC	2 cut(s)	357, 526
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	2 cut(s)	357, 526
FspBI	CTAG	5 cut(s)	6, 116, 165, 173, 404
GluI	GCNGC	2 cut(s)	357, 526
GsaI	CCCAGC	1 cut(s)	230
HaeIII	GGCC	1 cut(s)	551
HgaI	GACGC	1 cut(s)	232
Hin1II	CATG	7 cut(s)	37, 49, 182, 209, 323, 583, 624
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HinfI	GANTC	1 cut(s)	17
HpaI	GTTAAC	1 cut(s)	475
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	2 cut(s)	263, 475
Hpy188I	TCNGA	3 cut(s)	90, 513, 601
Hpy188III	TCNNGA	4 cut(s)	14, 179, 206, 320
Hpy8I	GTNNAC	2 cut(s)	263, 475
Hpy99I	CGWCG	1 cut(s)	226
HpyAV	CCTTC	3 cut(s)	88, 212, 393
HpyCH4III	ACNGT	2 cut(s)	260, 645
HpyCH4V	TGCA	5 cut(s)	214, 253, 359, 427, 579
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 356, 409
HpyF3I	CTNAG	1 cut(s)	444
Hsp92II	CATG	7 cut(s)	37, 49, 182, 209, 323, 583, 624
KpnI	GGTACC	1 cut(s)	546
Ksp22I	TGATCA	1 cut(s)	508
KspAI	GTTAAC	1 cut(s)	475
Kzo9I	GATC	5 cut(s)	42, 175, 322, 508, 607
LmnI	GCTCC	3 cut(s)	115, 307, 620
LpnPI	CCDG	4 cut(s)	144, 150, 212, 376
Lsp1109I	GCAGC	2 cut(s)	343, 512
LweI	GCATC	1 cut(s)	602
MaeI	CTAG	5 cut(s)	6, 116, 165, 173, 404
MalI	GATC	5 cut(s)	44, 177, 324, 510, 609
MboI	GATC	5 cut(s)	42, 175, 322, 508, 607
MboII	GAAGA	4 cut(s)	52, 103, 494, 618
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	3 cut(s)	382, 489, 602
MmeI	TCCRAC	2 cut(s)	267, 520
MnlI	CCTC	5 cut(s)	59, 267, 276, 327, 564
MroXI	GAANNNNTTC	1 cut(s)	489
MseI	TTAA	3 cut(s)	248, 366, 474
MspA1I	CMGCKG	1 cut(s)	525
MvnI	CGCG	2 cut(s)	455, 539
MwoI	GCNNNNNNNGC	3 cut(s)	116, 356, 409
NdeI	CATATG	1 cut(s)	372
NdeII	GATC	5 cut(s)	42, 175, 322, 508, 607
NlaIII	CATG	7 cut(s)	37, 49, 182, 209, 323, 583, 624
NlaIV	GGNNCC	3 cut(s)	303, 378, 544
NspI	RCATGY	2 cut(s)	583, 624
PagI	TCATGA	3 cut(s)	178, 205, 319
PciI	ACATGT	1 cut(s)	620
PcsI	WCGNNNNNNNCGW	1 cut(s)	230
PdmI	GAANNNNTTC	1 cut(s)	489
PfeI	GAWTC	1 cut(s)	17
PkrI	GCNGC	2 cut(s)	358, 527
PscI	ACATGT	1 cut(s)	620
Psp124BI	GAGCTC	1 cut(s)	13
PspFI	CCCAGC	1 cut(s)	226
PspN4I	GGNNCC	3 cut(s)	303, 378, 544
PstI	CTGCAG	1 cut(s)	361
PvuII	CAGCTG	1 cut(s)	525
RsaI	GTAC	2 cut(s)	163, 544
RsaNI	GTAC	2 cut(s)	162, 543
SacI	GAGCTC	1 cut(s)	13
SaqAI	TTAA	3 cut(s)	248, 366, 474
SatI	GCNGC	2 cut(s)	357, 526
Sau3AI	GATC	5 cut(s)	42, 175, 322, 508, 607
SduI	GDGCHC	1 cut(s)	13
SetI	ASST	8 cut(s)	13, 139, 163, 247, 268, 298, 319, 527
SfaNI	GCATC	1 cut(s)	602
SfcI	CTRYAG	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	12
SmoI	CTYRAG	1 cut(s)	12
SpeI	ACTAGT	1 cut(s)	164
Sse9I	AATT	3 cut(s)	382, 489, 602
SsiI	CCGC	4 cut(s)	277, 305, 453, 539
SspMI	CTAG	5 cut(s)	6, 116, 165, 173, 404
SstI	GAGCTC	1 cut(s)	13
TaaI	ACNGT	2 cut(s)	260, 645
TaqI	TCGA	2 cut(s)	104, 610
TasI	AATT	3 cut(s)	382, 489, 602
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	3 cut(s)	248, 366, 474
Tru9I	TTAA	3 cut(s)	248, 366, 474
TscAI	CASTG	2 cut(s)	263, 366
TseI	GCWGC	2 cut(s)	356, 525
TspDTI	ATGAA	1 cut(s)	194
TspGWI	ACGGA	1 cut(s)	273
TspRI	CASTG	2 cut(s)	263, 366
XceI	RCATGY	2 cut(s)	583, 624
XmnI	GAANNNNTTC	1 cut(s)	489
XspI	CTAG	5 cut(s)	6, 116, 165, 173, 404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.