Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009800

Physical Location & Seq

Genomic Coordinates Forward (+)

27947460 .. 27947684

Gene Structure 225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG261600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGTAGAGATCCTTGAAGAAGTTGATCCTCGAAGCTTGGAAGATGACGAAGCTGAAGATATCAGCTACGAGGATCTCAAGAAGCGAATGTGGAAGGATCGTGTACGCTTAGAGAAGCTCAAGGAAATCCGAAAAGCGAAGAACCCGAGTCTTTGGCTAAAGAAGAGGCGTCTCGCCGAAAGAAGATGGCTAGAGCTCAAGATTCCATACTCAAATACATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0080167 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

EIN3

Protein Analysis

74

Amino Acids

9.21

Weight (kDa)

8.96

Isoelectric Point (pI)

61.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10120 AT5G65100
fragaria_vesca	FvH4_1g21280
malus_domestica	MD01G1025900.v1.1 MD15G1327300.v1.1
prunus_persica	Prupe.6G181600_v2.0.a1
pyrus_communis	pycom395g00020
rosa_chinensis	RchiOBHm_Chr2g0115111
rosa_laevigata	RLG00000018159
rosa_multiflora	Rmu_sc0002784.1_g000010
rosa_roxburghii	Rroxscaffold_2G00130590
rosa_rugosa	Rorug02G0193600 Rorug02G0193700
rosa_samantha	Rh2AG252000 Rh2AG252100 Rh2BG261600 Rh2BG261700 Rh2CG256600 Rh2CG256700 Rh2DG260200 Rh2DG260300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	4, 20, 81, 105
AcuI	CTGAAG	1 cut(s)	75
AcyI	GRCGYC	1 cut(s)	169
AfaI	GTAC	1 cut(s)	105
AgsI	TTSAA	1 cut(s)	17
AluBI	AGCT	5 cut(s)	36, 53, 66, 118, 196
AluI	AGCT	5 cut(s)	36, 53, 66, 118, 196
Alw21I	GWGCWC	1 cut(s)	198
Alw26I	GTCTC	1 cut(s)	176
AlwI	GGATC	4 cut(s)	4, 20, 81, 105
Ama87I	CYCGRG	1 cut(s)	145
AvaI	CYCGRG	1 cut(s)	145
BanII	GRGCYC	1 cut(s)	198
Bbv12I	GWGCWC	1 cut(s)	198
BccI	CCATC	1 cut(s)	180
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	1 cut(s)	191
BmeT110I	CYCGRG	1 cut(s)	145
BpuEI	CTTGAG	3 cut(s)	62, 104, 182
BsaHI	GRCGYC	1 cut(s)	169
BsiHKAI	GWGCWC	1 cut(s)	198
BsiHKCI	CYCGRG	1 cut(s)	145
BsmAI	GTCTC	1 cut(s)	176
BsmBI	CGTCTC	1 cut(s)	176
BsoBI	CYCGRG	1 cut(s)	145
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp143I	GATC	4 cut(s)	9, 25, 73, 97
BspPI	GGATC	4 cut(s)	4, 20, 81, 105
BssMI	GATC	4 cut(s)	9, 25, 73, 97
BssNI	GRCGYC	1 cut(s)	169
Bst6I	CTCTTC	1 cut(s)	158
BstACI	GRCGYC	1 cut(s)	169
BstDEI	CTNAG	1 cut(s)	109
BstKTI	GATC	4 cut(s)	12, 28, 76, 100
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	4 cut(s)	9, 25, 73, 97
BstX2I	RGATCY	2 cut(s)	9, 73
BstYI	RGATCY	2 cut(s)	9, 73
CseI	GACGC	1 cut(s)	158
Csp6I	GTAC	1 cut(s)	104
CviAII	CATG	1 cut(s)	219
CviJI	RGCY	7 cut(s)	36, 53, 66, 118, 157, 190, 196
CviKI_1	RGCY	7 cut(s)	36, 53, 66, 118, 157, 190, 196
CviQI	GTAC	1 cut(s)	104
DdeI	CTNAG	1 cut(s)	109
DpnI	GATC	4 cut(s)	11, 27, 75, 99
DpnII	GATC	4 cut(s)	9, 25, 73, 97
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Ecl136II	GAGCTC	1 cut(s)	196
Eco24I	GRGCYC	1 cut(s)	198
Eco32I	GATATC	1 cut(s)	61
Eco53kI	GAGCTC	1 cut(s)	196
Eco57I	CTGAAG	1 cut(s)	75
Eco88I	CYCGRG	1 cut(s)	145
EcoICRI	GAGCTC	1 cut(s)	196
EcoRV	GATATC	1 cut(s)	61
EcoT38I	GRGCYC	1 cut(s)	198
Esp3I	CGTCTC	1 cut(s)	176
FaeI	CATG	1 cut(s)	222
FaiI	YATR	2 cut(s)	208, 220
FatI	CATG	1 cut(s)	218
FriOI	GRGCYC	1 cut(s)	198
FspBI	CTAG	1 cut(s)	191
HgaI	GACGC	1 cut(s)	158
Hin1I	GRCGYC	1 cut(s)	169
Hin1II	CATG	1 cut(s)	222
HindIII	AAGCTT	1 cut(s)	34
HinfI	GANTC	2 cut(s)	148, 202
Hpy166II	GTNNAC	1 cut(s)	104
Hpy188I	TCNGA	1 cut(s)	131
Hpy188III	TCNNGA	2 cut(s)	79, 199
Hpy8I	GTNNAC	1 cut(s)	104
HpyAV	CCTTC	1 cut(s)	88
HpyF3I	CTNAG	1 cut(s)	109
Hsp92I	GRCGYC	1 cut(s)	169
Hsp92II	CATG	1 cut(s)	222
Kzo9I	GATC	4 cut(s)	9, 25, 73, 97
MaeI	CTAG	1 cut(s)	191
MalI	GATC	4 cut(s)	11, 27, 75, 99
MboI	GATC	4 cut(s)	9, 25, 73, 97
MboII	GAAGA	6 cut(s)	29, 53, 68, 151, 175, 195
MflI	RGATCY	2 cut(s)	9, 73
MhlI	GDGCHC	1 cut(s)	198
MlyI	GAGTC	1 cut(s)	157
MnlI	CCTC	3 cut(s)	39, 64, 159
NdeII	GATC	4 cut(s)	9, 25, 73, 97
NlaIII	CATG	1 cut(s)	222
PfeI	GAWTC	1 cut(s)	202
PleI	GAGTC	1 cut(s)	156
PpsI	GAGTC	1 cut(s)	156
Psp124BI	GAGCTC	1 cut(s)	198
PsuI	RGATCY	2 cut(s)	9, 73
RsaI	GTAC	1 cut(s)	105
RsaNI	GTAC	1 cut(s)	104
SacI	GAGCTC	1 cut(s)	198
Sau3AI	GATC	4 cut(s)	9, 25, 73, 97
SchI	GAGTC	1 cut(s)	157
SduI	GDGCHC	1 cut(s)	198
SetI	ASST	5 cut(s)	38, 55, 68, 120, 198
SmlI	CTYRAG	3 cut(s)	77, 119, 197
SmoI	CTYRAG	3 cut(s)	77, 119, 197
SspMI	CTAG	1 cut(s)	191
SstI	GAGCTC	1 cut(s)	198
TaqI	TCGA	1 cut(s)	31
TfiI	GAWTC	1 cut(s)	202
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.