Rroxscaffold_2G00130590

ETHYLENE INSENSITIVE 3-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
66832383 .. 66832658
276 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00130590.1

Sequence Viewer

Length: 276 bp
ATGCGGGAGGTTGACACAAGTTCTTCGTATGATCATTCCTCAAATGATTCAGGATTCGAAAGTGTGGTGGAATGGATTAATATGGAGCTACAAAAGGCCAGCATAAACGAAGTCGGTGGAGTGGTCCTGTCTGGTTTTCCAAATACTTACTGGCAAGGTGGAATGGAAGAATTAGCTTTGGATGCAGCATTTGAGATTCAAAAGCAAAACATGGATTTGAATTTATGTCCAGAAGAAGGGATCTCACAGGCGAATCAAGACTCAACTTCAATTTAG

Protein Analysis

91

Amino Acids

10.02

Weight (kDa)

4.05

Isoelectric Point (pI)

43.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 4
AclWI GGATC 1 cut(s) 248
AcsI RAATTY 1 cut(s) 220
AfiI CCNNNNNNNGG 1 cut(s) 236
AgsI TTSAA 3 cut(s) 200, 220, 270
AluBI AGCT 2 cut(s) 88, 176
AluI AGCT 2 cut(s) 88, 176
AlwI GGATC 1 cut(s) 248
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 185
ApoI RAATTY 1 cut(s) 220
AseI ATTAAT 1 cut(s) 78
AspS9I GGNCC 1 cut(s) 124
AsuII TTCGAA 1 cut(s) 57
AvaII GGWCC 1 cut(s) 124
BbvI GCAGC 1 cut(s) 197
BclI TGATCA 1 cut(s) 31
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
Bme18I GGWCC 1 cut(s) 124
BmgT120I GGNCC 1 cut(s) 124
BmsI GCATC 1 cut(s) 172
Bpu14I TTCGAA 1 cut(s) 57
Bsc4I CCNNNNNNNGG 1 cut(s) 236
Bse1I ACTGG 1 cut(s) 155
BseGI GGATG 1 cut(s) 187
BseLI CCNNNNNNNGG 1 cut(s) 236
BseNI ACTGG 1 cut(s) 155
BseXI GCAGC 1 cut(s) 197
BshFI GGCC 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 236
BsnI GGCC 1 cut(s) 98
Bsp119I TTCGAA 1 cut(s) 57
Bsp143I GATC 2 cut(s) 31, 240
BspACI CCGC 1 cut(s) 4
BspANI GGCC 1 cut(s) 98
BspPI GGATC 1 cut(s) 248
BspT104I TTCGAA 1 cut(s) 57
BsrI ACTGG 1 cut(s) 155
BssMI GATC 2 cut(s) 31, 240
BstBI TTCGAA 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 100
BstF5I GGATG 1 cut(s) 187
BstKTI GATC 2 cut(s) 34, 243
BstMBI GATC 2 cut(s) 31, 240
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstV1I GCAGC 1 cut(s) 197
BstX2I RGATCY 1 cut(s) 240
BstYI RGATCY 1 cut(s) 240
BsuRI GGCC 1 cut(s) 98
BtsCI GGATG 1 cut(s) 187
Cac8I GCNNGC 1 cut(s) 100
Cfr13I GGNCC 1 cut(s) 124
CviAII CATG 1 cut(s) 211
CviJI RGCY 3 cut(s) 88, 98, 176
CviKI_1 RGCY 3 cut(s) 88, 98, 176
DpnI GATC 2 cut(s) 33, 242
DpnII GATC 2 cut(s) 31, 240
Eco47I GGWCC 1 cut(s) 124
FaeI CATG 1 cut(s) 214
FaiI YATR 5 cut(s) 30, 83, 104, 212, 226
FatI CATG 1 cut(s) 210
FbaI TGATCA 1 cut(s) 31
Fnu4HI GCNGC 1 cut(s) 186
FokI GGATG 1 cut(s) 194
Fsp4HI GCNGC 1 cut(s) 186
GluI GCNGC 1 cut(s) 186
HaeIII GGCC 1 cut(s) 98
Hin1II CATG 1 cut(s) 214
HincII GTYRAC 1 cut(s) 13
HindII GTYRAC 1 cut(s) 13
HinfI GANTC 5 cut(s) 47, 54, 196, 253, 260
Hpy166II GTNNAC 1 cut(s) 13
Hpy188III TCNNGA 3 cut(s) 51, 230, 257
Hpy8I GTNNAC 1 cut(s) 13
HpyAV CCTTC 1 cut(s) 230
HpyCH4V TGCA 1 cut(s) 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
Hsp92II CATG 1 cut(s) 214
Ksp22I TGATCA 1 cut(s) 31
Kzo9I GATC 2 cut(s) 31, 240
LmnI GCTCC 1 cut(s) 85
LpnPI CCDG 7 cut(s) 36, 112, 117, 136, 140, 233, 243
Lsp1109I GCAGC 1 cut(s) 197
LweI GCATC 1 cut(s) 172
MalI GATC 2 cut(s) 33, 242
MboI GATC 2 cut(s) 31, 240
MboII GAAGA 3 cut(s) 15, 179, 245
MflI RGATCY 1 cut(s) 240
MluCI AATT 3 cut(s) 170, 220, 270
MlyI GAGTC 1 cut(s) 254
MnlI CCTC 1 cut(s) 49
MseI TTAA 1 cut(s) 78
MwoI GCNNNNNNNGC 1 cut(s) 182
NdeII GATC 2 cut(s) 31, 240
NlaIII CATG 1 cut(s) 214
NspV TTCGAA 1 cut(s) 57
PfeI GAWTC 4 cut(s) 47, 54, 196, 253
PkrI GCNGC 1 cut(s) 187
PleI GAGTC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 254
PshBI ATTAAT 1 cut(s) 78
PspPI GGNCC 1 cut(s) 124
PsuI RGATCY 1 cut(s) 240
SaqAI TTAA 1 cut(s) 78
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 2 cut(s) 31, 240
Sau96I GGNCC 1 cut(s) 124
SchI GAGTC 1 cut(s) 254
SetI ASST 4 cut(s) 12, 90, 160, 178
SfaNI GCATC 1 cut(s) 172
SfuI TTCGAA 1 cut(s) 57
SinI GGWCC 1 cut(s) 124
Sse9I AATT 3 cut(s) 170, 220, 270
SsiI CCGC 1 cut(s) 4
TaqI TCGA 1 cut(s) 57
TasI AATT 3 cut(s) 170, 220, 270
TfiI GAWTC 4 cut(s) 47, 54, 196, 253
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TseI GCWGC 1 cut(s) 185
VpaK11BI GGWCC 1 cut(s) 124
VspI ATTAAT 1 cut(s) 78
XapI RAATTY 1 cut(s) 220
XcmI CCANNNNNNNNNTGG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.