Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009800

Physical Location & Seq

Genomic Coordinates Reverse (-)

18024645 .. 18025205

Gene Structure 561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0193700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGATCCGGGTCTGGATCTGAATTTGGGTCTTGATGTTTTGGGTGATGGAGGTACTGAGGATTCCGAATCGATCCTTGGAGGTGGAGGGGGTTTCTGCCCTCTGGTATTCACGTTGTCAGCGACGACGCTATCAATCTCGATCGGGAGGCGGCCATGGTTTCTGTCTTCTGATGCGTGCGTCGAAGACGACGACGCTCTGGTTGGCTGCTGGGTCGCCGGCAGGAGTGGGCGACGCAAGATCGATTGCGGGAGCGGGCAAGTCGGTGGAAATGGTTTCGACGGCGGTAGCTACGGGGATCTGGCAGCCTCCATTGCTGCACAGTTTGGACCTGGATTCAACTGGGTCCTTTGGGCCTGCTGGGTTTTGGGCTTCACTTGGTTGGGTTGGGTCCTAAAGAATATTACGACTCTGATGTTTACTATGTTTGCGATCGTAGGAACCATTTATTCTATGGAGGTGAGTAGGGGAGACTTTGATTCTGAGCATATGGAGAAGTCTTCGAAAACTGGAGGAGGAGCAAAGGGTGCTATGCCGTCCTCCTCTACTAGTATTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0080167 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

EIN3

Protein Analysis

186

Amino Acids

19.4

Weight (kDa)

4.36

Isoelectric Point (pI)

44.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10120 AT5G65100
fragaria_vesca	FvH4_1g21280
malus_domestica	MD01G1025900.v1.1 MD15G1327300.v1.1
prunus_persica	Prupe.6G181600_v2.0.a1
pyrus_communis	pycom395g00020
rosa_chinensis	RchiOBHm_Chr2g0115111
rosa_laevigata	RLG00000018159
rosa_multiflora	Rmu_sc0002784.1_g000010
rosa_roxburghii	Rroxscaffold_2G00130590
rosa_rugosa	Rorug02G0193600 Rorug02G0193700
rosa_samantha	Rh2AG252000 Rh2AG252100 Rh2BG261600 Rh2BG261700 Rh2CG256600 Rh2CG256700 Rh2DG260200 Rh2DG260300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	255
AciI	CCGC	4 cut(s)	151, 249, 255, 285
AclWI	GGATC	4 cut(s)	12, 24, 67, 306
AcoI	YGGCCR	1 cut(s)	152
AcsI	RAATTY	1 cut(s)	22
AfaI	GTAC	1 cut(s)	55
AgsI	TTSAA	1 cut(s)	340
AhlI	ACTAGT	1 cut(s)	548
AjnI	CCWGG	1 cut(s)	331
AjuI	GAANNNNNNNTTGG	2 cut(s)	60, 92
AluBI	AGCT	1 cut(s)	291
AluI	AGCT	1 cut(s)	291
Alw26I	GTCTC	1 cut(s)	465
AlwI	GGATC	4 cut(s)	12, 24, 67, 306
AoxI	GGCC	2 cut(s)	152, 354
ApeKI	GCWGC	3 cut(s)	207, 305, 317
ApoI	RAATTY	1 cut(s)	22
AspS9I	GGNCC	4 cut(s)	329, 346, 354, 391
AsuC2I	CCSGG	1 cut(s)	9
AsuHPI	GGTGA	2 cut(s)	56, 472
AsuII	TTCGAA	1 cut(s)	503
AvaII	GGWCC	3 cut(s)	329, 346, 391
BamHI	GGATCC	1 cut(s)	4
BbsI	GAAGAC	3 cut(s)	159, 192, 492
BbvI	GCAGC	3 cut(s)	194, 304, 317
BccI	CCATC	1 cut(s)	41
BceAI	ACGGC	2 cut(s)	298, 520
BciT130I	CCWGG	1 cut(s)	333
BcnI	CCSGG	1 cut(s)	9
BcoDI	GTCTC	1 cut(s)	465
BcuI	ACTAGT	1 cut(s)	548
BfaI	CTAG	1 cut(s)	549
BisI	GCNGC	4 cut(s)	152, 208, 306, 318
BlsI	GCNGC	4 cut(s)	153, 209, 307, 319
Bme1390I	CCNGG	2 cut(s)	9, 333
Bme18I	GGWCC	3 cut(s)	329, 346, 391
BmgT120I	GGNCC	4 cut(s)	329, 346, 354, 391
BmiI	GGNNCC	4 cut(s)	6, 347, 392, 442
BmrFI	CCNGG	2 cut(s)	9, 333
BmrI	ACTGGG	1 cut(s)	352
BmsI	GCATC	1 cut(s)	163
BmuI	ACTGGG	1 cut(s)	352
BpiI	GAAGAC	3 cut(s)	159, 192, 492
BpmI	CTGGAG	1 cut(s)	531
Bpu14I	TTCGAA	1 cut(s)	503
BpuMI	CCSGG	1 cut(s)	9
Bsa29I	ATCGAT	2 cut(s)	71, 243
BsaJI	CCNNGG	2 cut(s)	76, 155
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	2 cut(s)	347, 514
Bse3DI	GCAATG	1 cut(s)	312
BseBI	CCWGG	1 cut(s)	333
BseCI	ATCGAT	2 cut(s)	71, 243
BseDI	CCNNGG	2 cut(s)	76, 155
BseMI	GCAATG	1 cut(s)	312
BseMII	CTCAG	2 cut(s)	48, 474
BseNI	ACTGG	2 cut(s)	347, 514
BseRI	GAGGAG	3 cut(s)	528, 531, 532
BseXI	GCAGC	3 cut(s)	194, 304, 317
BseYI	CCCAGC	2 cut(s)	210, 360
BsgI	GTGCAG	1 cut(s)	303
Bsh1285I	CGRYCG	2 cut(s)	144, 435
BshFI	GGCC	2 cut(s)	154, 356
BshVI	ATCGAT	2 cut(s)	71, 243
BsiEI	CGRYCG	2 cut(s)	144, 435
BsiSI	CCGG	2 cut(s)	8, 219
BsmAI	GTCTC	1 cut(s)	465
BsnI	GGCC	2 cut(s)	154, 356
Bsp119I	TTCGAA	1 cut(s)	503
Bsp143I	GATC	7 cut(s)	4, 16, 72, 141, 240, 298, 432
Bsp19I	CCATGG	1 cut(s)	155
BspACI	CCGC	4 cut(s)	151, 249, 255, 285
BspANI	GGCC	2 cut(s)	154, 356
BspCNI	CTCAG	2 cut(s)	49, 475
BspDI	ATCGAT	2 cut(s)	71, 243
BspLI	GGNNCC	4 cut(s)	6, 347, 392, 442
BspPI	GGATC	4 cut(s)	12, 24, 67, 306
BspT104I	TTCGAA	1 cut(s)	503
BsrBI	CCGCTC	1 cut(s)	255
BsrDI	GCAATG	1 cut(s)	312
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	2 cut(s)	347, 514
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	2 cut(s)	76, 155
BssMI	GATC	7 cut(s)	4, 16, 72, 141, 240, 298, 432
BssT1I	CCWWGG	2 cut(s)	76, 155
Bst2UI	CCWGG	1 cut(s)	333
Bst4CI	ACNGT	1 cut(s)	324
BstAPI	GCANNNNNTGC	1 cut(s)	527
BstBI	TTCGAA	1 cut(s)	503
BstC8I	GCNNGC	4 cut(s)	178, 220, 257, 358
BstDEI	CTNAG	2 cut(s)	57, 483
BstDSI	CCRYGG	1 cut(s)	155
BstKTI	GATC	7 cut(s)	7, 19, 75, 144, 243, 301, 435
BstMAI	GTCTC	1 cut(s)	465
BstMBI	GATC	7 cut(s)	4, 16, 72, 141, 240, 298, 432
BstMCI	CGRYCG	2 cut(s)	144, 435
BstMWI	GCNNNNNNNGC	2 cut(s)	314, 527
BstNI	CCWGG	1 cut(s)	333
BstSCI	CCNGG	2 cut(s)	7, 331
BstV1I	GCAGC	3 cut(s)	194, 304, 317
BstV2I	GAAGAC	3 cut(s)	159, 192, 492
BstX2I	RGATCY	3 cut(s)	4, 16, 298
BstYI	RGATCY	3 cut(s)	4, 16, 298
Bsu15I	ATCGAT	2 cut(s)	71, 243
BsuRI	GGCC	2 cut(s)	154, 356
BsuTUI	ATCGAT	2 cut(s)	71, 243
BtgI	CCRYGG	1 cut(s)	155
Cac8I	GCNNGC	4 cut(s)	178, 220, 257, 358
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	4 cut(s)	329, 346, 354, 391
ClaI	ATCGAT	2 cut(s)	71, 243
CseI	GACGC	4 cut(s)	136, 169, 203, 243
Csp6I	GTAC	1 cut(s)	54
CviAII	CATG	1 cut(s)	156
CviJI	RGCY	6 cut(s)	154, 207, 291, 308, 356, 372
CviKI_1	RGCY	6 cut(s)	154, 207, 291, 308, 356, 372
CviQI	GTAC	1 cut(s)	54
DdeI	CTNAG	2 cut(s)	57, 483
DpnI	GATC	7 cut(s)	6, 18, 74, 143, 242, 300, 434
DpnII	GATC	7 cut(s)	4, 16, 72, 141, 240, 298, 432
EaeI	YGGCCR	1 cut(s)	152
Eco130I	CCWWGG	2 cut(s)	76, 155
Eco47I	GGWCC	3 cut(s)	329, 346, 391
EcoO109I	RGGNCCY	2 cut(s)	346, 391
EcoRII	CCWGG	1 cut(s)	331
EcoT14I	CCWWGG	2 cut(s)	76, 155
ErhI	CCWWGG	2 cut(s)	76, 155
FaeI	CATG	1 cut(s)	159
FaiI	YATR	6 cut(s)	157, 425, 455, 489, 491, 533
FatI	CATG	1 cut(s)	155
FauI	CCCGC	2 cut(s)	242, 248
FauNDI	CATATG	1 cut(s)	489
Fnu4HI	GCNGC	4 cut(s)	152, 208, 306, 318
Fsp4HI	GCNGC	4 cut(s)	152, 208, 306, 318
FspBI	CTAG	1 cut(s)	549
GluI	GCNGC	4 cut(s)	152, 208, 306, 318
GsaI	CCCAGC	2 cut(s)	214, 364
GsuI	CTGGAG	1 cut(s)	531
HaeIII	GGCC	2 cut(s)	154, 356
HapII	CCGG	2 cut(s)	8, 219
HgaI	GACGC	4 cut(s)	136, 169, 203, 243
Hin1II	CATG	1 cut(s)	159
HinfI	GANTC	5 cut(s)	62, 68, 336, 409, 479
HpaII	CCGG	2 cut(s)	8, 219
HphI	GGTGA	2 cut(s)	56, 472
Hpy166II	GTNNAC	1 cut(s)	420
Hpy188I	TCNGA	5 cut(s)	21, 67, 172, 414, 484
Hpy188III	TCNNGA	4 cut(s)	14, 32, 139, 145
Hpy8I	GTNNAC	1 cut(s)	420
Hpy99I	CGWCG	7 cut(s)	127, 130, 185, 194, 197, 237, 284
HpyCH4III	ACNGT	1 cut(s)	324
HpyCH4IV	ACGT	1 cut(s)	113
HpyCH4V	TGCA	1 cut(s)	320
HpyF10VI	GCNNNNNNNGC	2 cut(s)	314, 527
HpyF3I	CTNAG	2 cut(s)	57, 483
HpySE526I	ACGT	1 cut(s)	113
Hsp92II	CATG	1 cut(s)	159
KroI	GCCGGC	1 cut(s)	218
KroNI	GCCGGC	1 cut(s)	220
Kzo9I	GATC	7 cut(s)	4, 16, 72, 141, 240, 298, 432
LmnI	GCTCC	2 cut(s)	252, 518
Lsp1109I	GCAGC	3 cut(s)	194, 304, 317
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	1 cut(s)	549
MaeII	ACGT	1 cut(s)	113
MalI	GATC	7 cut(s)	6, 18, 74, 143, 242, 300, 434
MbiI	CCGCTC	1 cut(s)	255
MboI	GATC	7 cut(s)	4, 16, 72, 141, 240, 298, 432
MboII	GAAGA	3 cut(s)	159, 197, 492
MflI	RGATCY	3 cut(s)	4, 16, 298
MluCI	AATT	1 cut(s)	22
MlyI	GAGTC	1 cut(s)	403
MroNI	GCCGGC	1 cut(s)	218
MseI	TTAA	1 cut(s)	559
MspI	CCGG	2 cut(s)	8, 219
MspR9I	CCNGG	2 cut(s)	9, 333
MvaI	CCWGG	1 cut(s)	333
MwoI	GCNNNNNNNGC	2 cut(s)	314, 527
NaeI	GCCGGC	1 cut(s)	220
NciI	CCSGG	1 cut(s)	9
NcoI	CCATGG	1 cut(s)	155
NdeI	CATATG	1 cut(s)	489
NdeII	GATC	7 cut(s)	4, 16, 72, 141, 240, 298, 432
NgoMIV	GCCGGC	1 cut(s)	218
NlaIII	CATG	1 cut(s)	159
NlaIV	GGNNCC	4 cut(s)	6, 347, 392, 442
NspV	TTCGAA	1 cut(s)	503
PcsI	WCGNNNNNNNCGW	2 cut(s)	119, 189
PdiI	GCCGGC	1 cut(s)	220
PfeI	GAWTC	4 cut(s)	62, 68, 336, 479
PkrI	GCNGC	4 cut(s)	153, 209, 307, 319
Ple19I	CGATCG	2 cut(s)	144, 435
PleI	GAGTC	1 cut(s)	403
PpsI	GAGTC	1 cut(s)	403
PpuMI	RGGWCCY	2 cut(s)	346, 391
Psp5II	RGGWCCY	2 cut(s)	346, 391
Psp6I	CCWGG	1 cut(s)	331
PspFI	CCCAGC	2 cut(s)	210, 360
PspGI	CCWGG	1 cut(s)	331
PspN4I	GGNNCC	4 cut(s)	6, 347, 392, 442
PspPI	GGNCC	4 cut(s)	329, 346, 354, 391
PspPPI	RGGWCCY	2 cut(s)	346, 391
PsuI	RGATCY	3 cut(s)	4, 16, 298
PvuI	CGATCG	2 cut(s)	144, 435
RsaI	GTAC	1 cut(s)	55
RsaNI	GTAC	1 cut(s)	54
SaqAI	TTAA	1 cut(s)	559
SatI	GCNGC	4 cut(s)	152, 208, 306, 318
Sau3AI	GATC	7 cut(s)	4, 16, 72, 141, 240, 298, 432
Sau96I	GGNCC	4 cut(s)	329, 346, 354, 391
SchI	GAGTC	1 cut(s)	403
ScrFI	CCNGG	2 cut(s)	9, 333
SetI	ASST	6 cut(s)	55, 85, 116, 293, 334, 462
SfaNI	GCATC	1 cut(s)	163
SfuI	TTCGAA	1 cut(s)	503
SinI	GGWCC	3 cut(s)	329, 346, 391
SpeI	ACTAGT	1 cut(s)	548
Sse9I	AATT	1 cut(s)	22
SsiI	CCGC	4 cut(s)	151, 249, 255, 285
SspI	AATATT	1 cut(s)	403
SspMI	CTAG	1 cut(s)	549
StyD4I	CCNGG	2 cut(s)	7, 331
StyI	CCWWGG	2 cut(s)	76, 155
TaaI	ACNGT	1 cut(s)	324
TaiI	ACGT	1 cut(s)	116
TaqI	TCGA	6 cut(s)	71, 140, 183, 243, 279, 503
TasI	AATT	1 cut(s)	22
TauI	GCSGC	1 cut(s)	154
TfiI	GAWTC	4 cut(s)	62, 68, 336, 479
Tru1I	TTAA	1 cut(s)	559
Tru9I	TTAA	1 cut(s)	559
TseI	GCWGC	3 cut(s)	207, 305, 317
VpaK11BI	GGWCC	3 cut(s)	329, 346, 391
XapI	RAATTY	1 cut(s)	22
XcmI	CCANNNNNNNNNTGG	1 cut(s)	451
XspI	CTAG	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.