Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0009800

Physical Location & Seq

Genomic Coordinates Forward (+)

27927073 .. 27927542

Gene Structure 470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG260300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGCAACACTGTAAGCCTCCACAGAGGCGGTTTCCGTTGGAGAAAGGTTTGGCTCCGCCGTGGTGGCCTAACAGAAATGAGATATGGTGGGGTGAACAAGGGTTTCTCAAGAGCATGGGCCTCCTCCATATAGGAAACCTCATGATCTCAAAAAGGCTTGGAAAGGTTAGAAGGCTAGTAAAGCAGTCCAAGTGCTTGCAAGATAAAATGACTGTTAAGGAGACCGCGATTTGGTCAAAAGTGGTTAACCAAGAAGAAGCAATTCTCCAACTTATAACTGATCAGAAACCAATCAGCTGCCCCGAAATCGCGGGCACCACGGCCTTACATTCTAACGAAAAGAGGAAGTGCATGTTTGATGACGATTGCTCTGAATTGGATCGATGCTCCACATGTTCTTCCAAAAACTTCAAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0080167 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

EIN3

Protein Analysis

139

Amino Acids

16.07

Weight (kDa)

9.28

Isoelectric Point (pI)

58.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EIN3_DNA-bd	PF04873	1 - 38	1.3e-15	Ethylene insensitive 3, DNA-binding domain
EIN3_DNA-bd	PF04873	49 - 86	6.7e-08	Ethylene insensitive 3, DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10120 AT5G65100
fragaria_vesca	FvH4_1g21280
malus_domestica	MD01G1025900.v1.1 MD15G1327300.v1.1
prunus_persica	Prupe.6G181600_v2.0.a1
pyrus_communis	pycom395g00020
rosa_chinensis	RchiOBHm_Chr2g0115111
rosa_laevigata	RLG00000018159
rosa_multiflora	Rmu_sc0002784.1_g000010
rosa_roxburghii	Rroxscaffold_2G00130590
rosa_rugosa	Rorug02G0193600 Rorug02G0193700
rosa_samantha	Rh2AG252000 Rh2AG252100 Rh2BG261600 Rh2BG261700 Rh2CG256600 Rh2CG256700 Rh2DG260200 Rh2DG260300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	275
AccB1I	GGYRCC	1 cut(s)	314
AccII	CGCG	2 cut(s)	227, 311
AciI	CCGC	4 cut(s)	28, 56, 225, 311
AclWI	GGATC	1 cut(s)	387
AfiI	CCNNNNNNNGG	1 cut(s)	231
AflIII	ACRYGT	1 cut(s)	392
AgsI	TTSAA	1 cut(s)	412
AluBI	AGCT	1 cut(s)	297
AluI	AGCT	1 cut(s)	297
Alw26I	GTCTC	1 cut(s)	215
AlwI	GGATC	1 cut(s)	387
AoxI	GGCC	3 cut(s)	65, 118, 321
ApeKI	GCWGC	1 cut(s)	297
Asp700I	GAANNNNTTC	1 cut(s)	261
AspS9I	GGNCC	1 cut(s)	118
AsuHPI	GGTGA	1 cut(s)	104
BaeGI	GKGCMC	1 cut(s)	317
BanI	GGYRCC	1 cut(s)	314
BbvI	GCAGC	1 cut(s)	284
BceAI	ACGGC	2 cut(s)	43, 336
BclI	TGATCA	1 cut(s)	280
BcoDI	GTCTC	1 cut(s)	215
BfaI	CTAG	1 cut(s)	176
BglI	GCCNNNNNGGC	1 cut(s)	64
BisI	GCNGC	1 cut(s)	298
BlsI	GCNGC	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	2 cut(s)	54, 316
BmsI	GCATC	1 cut(s)	374
BpuEI	CTTGAG	1 cut(s)	92
Bsa29I	ATCGAT	1 cut(s)	382
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	2 cut(s)	59, 318
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
BseCI	ATCGAT	1 cut(s)	382
BseDI	CCNNGG	2 cut(s)	59, 318
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseRI	GAGGAG	1 cut(s)	113
BseSI	GKGCMC	1 cut(s)	317
BseXI	GCAGC	1 cut(s)	284
Bsh1236I	CGCG	2 cut(s)	227, 311
BshFI	GGCC	3 cut(s)	67, 120, 323
BshNI	GGYRCC	1 cut(s)	314
BshVI	ATCGAT	1 cut(s)	382
BslI	CCNNNNNNNGG	1 cut(s)	231
BsmAI	GTCTC	1 cut(s)	215
BsnI	GGCC	3 cut(s)	67, 120, 323
Bso31I	GGTCTC	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp143I	GATC	3 cut(s)	144, 280, 379
BspACI	CCGC	4 cut(s)	28, 56, 225, 311
BspANI	GGCC	3 cut(s)	67, 120, 323
BspDI	ATCGAT	1 cut(s)	382
BspFNI	CGCG	2 cut(s)	227, 311
BspHI	TCATGA	1 cut(s)	141
BspLI	GGNNCC	2 cut(s)	54, 316
BspPI	GGATC	1 cut(s)	387
BspT107I	GGYRCC	1 cut(s)	314
BspTNI	GGTCTC	1 cut(s)	215
BssECI	CCNNGG	2 cut(s)	59, 318
BssMI	GATC	3 cut(s)	144, 280, 379
Bst4CI	ACNGT	3 cut(s)	11, 214, 417
BstC8I	GCNNGC	2 cut(s)	197, 313
BstDSI	CCRYGG	2 cut(s)	59, 318
BstFNI	CGCG	2 cut(s)	227, 311
BstKTI	GATC	3 cut(s)	147, 283, 382
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	3 cut(s)	144, 280, 379
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 181
BstNSI	RCATGY	2 cut(s)	355, 396
BstSLI	GKGCMC	1 cut(s)	317
BstUI	CGCG	2 cut(s)	227, 311
BstV1I	GCAGC	1 cut(s)	284
Bsu15I	ATCGAT	1 cut(s)	382
BsuRI	GGCC	3 cut(s)	67, 120, 323
BsuTUI	ATCGAT	1 cut(s)	382
BtgI	CCRYGG	2 cut(s)	59, 318
BtsIMutI	CAGTG	1 cut(s)	7
Cac8I	GCNNGC	2 cut(s)	197, 313
CciI	TCATGA	1 cut(s)	141
Cfr13I	GGNCC	1 cut(s)	118
ClaI	ATCGAT	1 cut(s)	382
CviAII	CATG	4 cut(s)	115, 142, 352, 393
CviJI	RGCY	8 cut(s)	16, 53, 67, 120, 157, 175, 297, 323
CviKI_1	RGCY	8 cut(s)	16, 53, 67, 120, 157, 175, 297, 323
DpnI	GATC	3 cut(s)	146, 282, 381
DpnII	GATC	3 cut(s)	144, 280, 379
EciI	GGCGGA	1 cut(s)	45
Eco31I	GGTCTC	1 cut(s)	215
FaeI	CATG	4 cut(s)	118, 145, 355, 396
FaiI	YATR	8 cut(s)	85, 116, 129, 131, 143, 275, 353, 394
FatI	CATG	4 cut(s)	114, 141, 351, 392
FauI	CCCGC	1 cut(s)	304
FbaI	TGATCA	1 cut(s)	280
Fnu4HI	GCNGC	1 cut(s)	298
Fsp4HI	GCNGC	1 cut(s)	298
FspBI	CTAG	1 cut(s)	176
GluI	GCNGC	1 cut(s)	298
HaeIII	GGCC	3 cut(s)	67, 120, 323
Hin1II	CATG	4 cut(s)	118, 145, 355, 396
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HpaI	GTTAAC	1 cut(s)	247
HphI	GGTGA	1 cut(s)	104
Hpy166II	GTNNAC	2 cut(s)	95, 247
Hpy188I	TCNGA	2 cut(s)	285, 373
Hpy188III	TCNNGA	2 cut(s)	109, 142
Hpy8I	GTNNAC	2 cut(s)	95, 247
HpyAV	CCTTC	1 cut(s)	165
HpyCH4III	ACNGT	3 cut(s)	11, 214, 417
HpyCH4V	TGCA	3 cut(s)	4, 199, 351
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 181
Hsp92II	CATG	4 cut(s)	118, 145, 355, 396
Ksp22I	TGATCA	1 cut(s)	280
KspAI	GTTAAC	1 cut(s)	247
Kzo9I	GATC	3 cut(s)	144, 280, 379
LmnI	GCTCC	2 cut(s)	58, 392
Lsp1109I	GCAGC	1 cut(s)	284
LweI	GCATC	1 cut(s)	374
MaeI	CTAG	1 cut(s)	176
MalI	GATC	3 cut(s)	146, 282, 381
MboI	GATC	3 cut(s)	144, 280, 379
MboII	GAAGA	2 cut(s)	266, 390
MhlI	GDGCHC	1 cut(s)	317
MluCI	AATT	2 cut(s)	261, 374
MmeI	TCCRAC	2 cut(s)	18, 292
MnlI	CCTC	6 cut(s)	18, 27, 131, 134, 149, 336
MroXI	GAANNNNTTC	1 cut(s)	261
MseI	TTAA	2 cut(s)	216, 246
MspA1I	CMGCKG	1 cut(s)	297
MvnI	CGCG	2 cut(s)	227, 311
MwoI	GCNNNNNNNGC	2 cut(s)	64, 181
NdeII	GATC	3 cut(s)	144, 280, 379
NlaIII	CATG	4 cut(s)	118, 145, 355, 396
NlaIV	GGNNCC	2 cut(s)	54, 316
NspI	RCATGY	2 cut(s)	355, 396
PagI	TCATGA	1 cut(s)	141
PciI	ACATGT	1 cut(s)	392
PdmI	GAANNNNTTC	1 cut(s)	261
PkrI	GCNGC	1 cut(s)	299
PscI	ACATGT	1 cut(s)	392
PsiI	TTATAA	1 cut(s)	275
PspN4I	GGNNCC	2 cut(s)	54, 316
PspPI	GGNCC	1 cut(s)	118
PvuII	CAGCTG	1 cut(s)	297
SaqAI	TTAA	2 cut(s)	216, 246
SatI	GCNGC	1 cut(s)	298
Sau3AI	GATC	3 cut(s)	144, 280, 379
Sau96I	GGNCC	1 cut(s)	118
SduI	GDGCHC	1 cut(s)	317
SetI	ASST	4 cut(s)	49, 141, 168, 299
SfaNI	GCATC	1 cut(s)	374
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	2 cut(s)	261, 374
SsiI	CCGC	4 cut(s)	28, 56, 225, 311
SspMI	CTAG	1 cut(s)	176
TaaI	ACNGT	3 cut(s)	11, 214, 417
TaqI	TCGA	1 cut(s)	382
TasI	AATT	2 cut(s)	261, 374
Tru1I	TTAA	2 cut(s)	216, 246
Tru9I	TTAA	2 cut(s)	216, 246
TscAI	CASTG	1 cut(s)	14
TseI	GCWGC	1 cut(s)	297
TspGWI	ACGGA	1 cut(s)	24
TspRI	CASTG	1 cut(s)	14
XceI	RCATGY	2 cut(s)	355, 396
XmnI	GAANNNNTTC	1 cut(s)	261
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.