Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0009800

Physical Location & Seq

Genomic Coordinates Forward (+)

27364341 .. 27364811

Gene Structure 471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG256700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGCAACACTGTAAGCCTCCACAGAGGCGGTTTCCGTTGGAGAAAGGTTTGGCTCCGCCGTGGTGGCCTAACGGAAATGAGATATGGTGGGGTGAACAAGGGGTTTCTCAAGAGCATGGGCCTCCTCCATATAGGAAACCTCATGATCTCAAAAAGGCTTGGATAGTAAGTTCTTTGGCTGCAGTGATTAAGCATATGGTTCCTAATTTGGACAGGGTTAGAAGGCTAGTAAAGCAGTCCAAGTGCTTGCAAGATAAAATGACTGCTAAGGAGACCGCGATTTGGTCAAAAGTGGTTAACCAAGAAGAAGCAATTCTCCAACTTATTACTGATCAGAAACCAATCAGCTGCCCCGAAATCGCGGGCACCACGGCCTTACATTCTAACGAAAAGAGGAAGTGCATGTTTGATGACGATTGCTCTGAATTGGATCGATGCTCCACATGTTCTTCCAAAAACTTCAAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0080167 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

EIN3

Protein Analysis

156

Amino Acids

17.9

Weight (kDa)

8.99

Isoelectric Point (pI)

51.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EIN3_DNA-bd	PF04873	1 - 103	2.1e-51	Ethylene insensitive 3, DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10120 AT5G65100
fragaria_vesca	FvH4_1g21280
malus_domestica	MD01G1025900.v1.1 MD15G1327300.v1.1
prunus_persica	Prupe.6G181600_v2.0.a1
pyrus_communis	pycom395g00020
rosa_chinensis	RchiOBHm_Chr2g0115111
rosa_laevigata	RLG00000018159
rosa_multiflora	Rmu_sc0002784.1_g000010
rosa_roxburghii	Rroxscaffold_2G00130590
rosa_rugosa	Rorug02G0193600 Rorug02G0193700
rosa_samantha	Rh2AG252000 Rh2AG252100 Rh2BG261600 Rh2BG261700 Rh2CG256600 Rh2CG256700 Rh2DG260200 Rh2DG260300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	365
AccII	CGCG	2 cut(s)	278, 362
AciI	CCGC	4 cut(s)	28, 56, 276, 362
AclWI	GGATC	1 cut(s)	438
AfiI	CCNNNNNNNGG	1 cut(s)	282
AflIII	ACRYGT	1 cut(s)	443
AgsI	TTSAA	1 cut(s)	463
AloI	GAACNNNNNNTCC	2 cut(s)	154, 186
AluBI	AGCT	1 cut(s)	348
AluI	AGCT	1 cut(s)	348
Alw26I	GTCTC	1 cut(s)	266
AlwI	GGATC	1 cut(s)	438
AoxI	GGCC	3 cut(s)	65, 119, 372
ApeKI	GCWGC	2 cut(s)	179, 348
Asp700I	GAANNNNTTC	1 cut(s)	312
AspS9I	GGNCC	1 cut(s)	119
AsuHPI	GGTGA	1 cut(s)	104
BaeGI	GKGCMC	1 cut(s)	368
BanI	GGYRCC	1 cut(s)	365
BbvI	GCAGC	2 cut(s)	166, 335
BceAI	ACGGC	2 cut(s)	43, 387
BclI	TGATCA	1 cut(s)	331
BcoDI	GTCTC	1 cut(s)	266
BfaI	CTAG	1 cut(s)	227
BfmI	CTRYAG	1 cut(s)	180
BglI	GCCNNNNNGGC	1 cut(s)	64
BisI	GCNGC	2 cut(s)	180, 349
BlsI	GCNGC	2 cut(s)	181, 350
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	3 cut(s)	54, 201, 367
BmsI	GCATC	1 cut(s)	425
Bpu10I	CCTNAGC	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	93
Bsa29I	ATCGAT	1 cut(s)	433
BsaI	GGTCTC	1 cut(s)	266
BsaJI	CCNNGG	2 cut(s)	59, 369
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
BseCI	ATCGAT	1 cut(s)	433
BseDI	CCNNGG	2 cut(s)	59, 369
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseRI	GAGGAG	1 cut(s)	114
BseSI	GKGCMC	1 cut(s)	368
BseXI	GCAGC	2 cut(s)	166, 335
Bsh1236I	CGCG	2 cut(s)	278, 362
BshFI	GGCC	3 cut(s)	67, 121, 374
BshNI	GGYRCC	1 cut(s)	365
BshVI	ATCGAT	1 cut(s)	433
BslI	CCNNNNNNNGG	1 cut(s)	282
BsmAI	GTCTC	1 cut(s)	266
BsnI	GGCC	3 cut(s)	67, 121, 374
Bso31I	GGTCTC	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	368
Bsp143I	GATC	3 cut(s)	145, 331, 430
BspACI	CCGC	4 cut(s)	28, 56, 276, 362
BspANI	GGCC	3 cut(s)	67, 121, 374
BspDI	ATCGAT	1 cut(s)	433
BspFNI	CGCG	2 cut(s)	278, 362
BspHI	TCATGA	1 cut(s)	142
BspLI	GGNNCC	3 cut(s)	54, 201, 367
BspMAI	CTGCAG	1 cut(s)	184
BspPI	GGATC	1 cut(s)	438
BspT107I	GGYRCC	1 cut(s)	365
BspTNI	GGTCTC	1 cut(s)	266
BssECI	CCNNGG	2 cut(s)	59, 369
BssMI	GATC	3 cut(s)	145, 331, 430
Bst4CI	ACNGT	2 cut(s)	11, 468
BstC8I	GCNNGC	2 cut(s)	248, 364
BstDEI	CTNAG	1 cut(s)	267
BstDSI	CCRYGG	2 cut(s)	59, 369
BstFNI	CGCG	2 cut(s)	278, 362
BstKTI	GATC	3 cut(s)	148, 334, 433
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	3 cut(s)	145, 331, 430
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 232
BstNSI	RCATGY	2 cut(s)	406, 447
BstSFI	CTRYAG	1 cut(s)	180
BstSLI	GKGCMC	1 cut(s)	368
BstUI	CGCG	2 cut(s)	278, 362
BstV1I	GCAGC	2 cut(s)	166, 335
Bsu15I	ATCGAT	1 cut(s)	433
BsuRI	GGCC	3 cut(s)	67, 121, 374
BsuTUI	ATCGAT	1 cut(s)	433
BtgI	CCRYGG	2 cut(s)	59, 369
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	2 cut(s)	7, 189
Cac8I	GCNNGC	2 cut(s)	248, 364
CciI	TCATGA	1 cut(s)	142
Cfr13I	GGNCC	1 cut(s)	119
ClaI	ATCGAT	1 cut(s)	433
CviAII	CATG	4 cut(s)	116, 143, 403, 444
CviJI	RGCY	9 cut(s)	16, 53, 67, 121, 158, 179, 226, 348, 374
CviKI_1	RGCY	9 cut(s)	16, 53, 67, 121, 158, 179, 226, 348, 374
DdeI	CTNAG	1 cut(s)	267
DpnI	GATC	3 cut(s)	147, 333, 432
DpnII	GATC	3 cut(s)	145, 331, 430
EciI	GGCGGA	1 cut(s)	45
Eco31I	GGTCTC	1 cut(s)	266
FaeI	CATG	4 cut(s)	119, 146, 406, 447
FaiI	YATR	9 cut(s)	85, 117, 130, 132, 144, 195, 197, 404, 445
FatI	CATG	4 cut(s)	115, 142, 402, 443
FauI	CCCGC	1 cut(s)	355
FauNDI	CATATG	1 cut(s)	195
FbaI	TGATCA	1 cut(s)	331
Fnu4HI	GCNGC	2 cut(s)	180, 349
Fsp4HI	GCNGC	2 cut(s)	180, 349
FspBI	CTAG	1 cut(s)	227
GluI	GCNGC	2 cut(s)	180, 349
HaeIII	GGCC	3 cut(s)	67, 121, 374
Hin1II	CATG	4 cut(s)	119, 146, 406, 447
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HpaI	GTTAAC	1 cut(s)	298
HphI	GGTGA	1 cut(s)	104
Hpy166II	GTNNAC	2 cut(s)	95, 298
Hpy188I	TCNGA	2 cut(s)	336, 424
Hpy188III	TCNNGA	2 cut(s)	110, 143
Hpy8I	GTNNAC	2 cut(s)	95, 298
HpyAV	CCTTC	1 cut(s)	216
HpyCH4III	ACNGT	2 cut(s)	11, 468
HpyCH4V	TGCA	4 cut(s)	4, 182, 250, 402
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 232
HpyF3I	CTNAG	1 cut(s)	267
Hsp92II	CATG	4 cut(s)	119, 146, 406, 447
Ksp22I	TGATCA	1 cut(s)	331
KspAI	GTTAAC	1 cut(s)	298
Kzo9I	GATC	3 cut(s)	145, 331, 430
LmnI	GCTCC	2 cut(s)	58, 443
LpnPI	CCDG	1 cut(s)	199
Lsp1109I	GCAGC	2 cut(s)	166, 335
LweI	GCATC	1 cut(s)	425
MaeI	CTAG	1 cut(s)	227
MalI	GATC	3 cut(s)	147, 333, 432
MboI	GATC	3 cut(s)	145, 331, 430
MboII	GAAGA	2 cut(s)	317, 441
MhlI	GDGCHC	1 cut(s)	368
MluCI	AATT	3 cut(s)	205, 312, 425
MmeI	TCCRAC	2 cut(s)	18, 343
MnlI	CCTC	6 cut(s)	18, 27, 132, 135, 150, 387
MroXI	GAANNNNTTC	1 cut(s)	312
MseI	TTAA	2 cut(s)	189, 297
MspA1I	CMGCKG	1 cut(s)	348
MvnI	CGCG	2 cut(s)	278, 362
MwoI	GCNNNNNNNGC	2 cut(s)	64, 232
NdeI	CATATG	1 cut(s)	195
NdeII	GATC	3 cut(s)	145, 331, 430
NlaIII	CATG	4 cut(s)	119, 146, 406, 447
NlaIV	GGNNCC	3 cut(s)	54, 201, 367
NspI	RCATGY	2 cut(s)	406, 447
PagI	TCATGA	1 cut(s)	142
PciI	ACATGT	1 cut(s)	443
PdmI	GAANNNNTTC	1 cut(s)	312
PkrI	GCNGC	2 cut(s)	181, 350
PscI	ACATGT	1 cut(s)	443
PspN4I	GGNNCC	3 cut(s)	54, 201, 367
PspPI	GGNCC	1 cut(s)	119
PstI	CTGCAG	1 cut(s)	184
PvuII	CAGCTG	1 cut(s)	348
SaqAI	TTAA	2 cut(s)	189, 297
SatI	GCNGC	2 cut(s)	180, 349
Sau3AI	GATC	3 cut(s)	145, 331, 430
Sau96I	GGNCC	1 cut(s)	119
SduI	GDGCHC	1 cut(s)	368
SetI	ASST	3 cut(s)	49, 142, 350
SfaNI	GCATC	1 cut(s)	425
SfcI	CTRYAG	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	108
SmoI	CTYRAG	1 cut(s)	108
Sse9I	AATT	3 cut(s)	205, 312, 425
SsiI	CCGC	4 cut(s)	28, 56, 276, 362
SspMI	CTAG	1 cut(s)	227
TaaI	ACNGT	2 cut(s)	11, 468
TaqI	TCGA	1 cut(s)	433
TasI	AATT	3 cut(s)	205, 312, 425
Tru1I	TTAA	2 cut(s)	189, 297
Tru9I	TTAA	2 cut(s)	189, 297
TscAI	CASTG	2 cut(s)	14, 189
TseI	GCWGC	2 cut(s)	179, 348
TspGWI	ACGGA	2 cut(s)	24, 87
TspRI	CASTG	2 cut(s)	14, 189
XceI	RCATGY	2 cut(s)	406, 447
XmnI	GAANNNNTTC	1 cut(s)	312
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.