Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00000395

Orthogroup ID

OG0009800

Physical Location & Seq

Genomic Coordinates Reverse (-)

39816 .. 41174

Gene Structure 1359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom395g00020.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGTAGAGTTCCATGGAGAAGTTGATACTGTAAGGGTTGGGATAGTTGTAGAAGATGAGGAAGCAGCTGAAGATCACATCAGCTACGAAGAGCTCAAGAAGCGAATGTGGAAGCATCGTATTCGCTTACAAAAGCTCAAAGAGTGGTCGTTGGCAAAGCAAGAAGTGTCTCGTCGAAAGAAAATGGCAAGATCCCAAGATTCGATACTGAAATACATGGGGAAAATCATGGAGGTATGCAAAGCAAAGGGCTTTGTGTATGGGATTGTGCCTGAGAAGGGAAAGCCAATGACGGGCTCCTCTGATAGCTTAAGAAAGTGGTGGAAAGACAAAGTGAGATTTGACCAAAACGCCCCCATTGCAATAGCCGAGCATCTGCCAGCTCTGATTTTTGAACAAGGTGAGTTAGATCATGGCTCTTATGCTCATTTGCTTCATGAATTGCAAGACACTACTTTGGCGTCTCTTCTTTCTGCTCTGATGCAGCACTGCATGCCGCCACAGCGGAGGTTCCCTCTGGAGAAGGACCAAGGGATTTCTGTAGAGCATGGCGCTCCTCCTTATCGGAAGCCCCACGATCTCGCAAAGGCATGGAAAGTGAGTGCCTTGGCTGCTGTGATCAAACACATGGCCCCTAATTCAGATAAAGTGAGAAAGCTTGTGAGGCAAAGCAAGTGTTTGCAAGATAAGATGACTGCTATTTTGTCCAAAGTGGTTAACCAAGAAGAATCATTTATACAAATTACTGAGAAATGCCTCAAAATCTCTGATCACTCAAATAAAAAGGTTAAGAATATGAAGTGGCCTGCTACTGCTAGCAATGAAAAGAGGAAGTTGATGAGTACTGATTTGGGATTAGGTGTAGTGGATTGGATCGATATGGAGCTAGACAAGATCAATCGGATTGATCACAACAATGGTGCACTTGTAATCAATGAGCAAGTTGGTGGGGACGTGTCTGGTACTAAAGTGGGAGGCTATGGATCAGCAAGCTATTGGGGAAGTGGTATTTATGATGATGATGATCTAGCTATGGATGGAGCATTTGAGATCGGAAGGGGAAACATGGATTCGATTCTTTCTTCTGAAGAGATGTTACATACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0080167 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

EIN3

Protein Analysis

369

Amino Acids

41.56

Weight (kDa)

7.72

Isoelectric Point (pI)

38.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10120 AT5G65100
fragaria_vesca	FvH4_1g21280
malus_domestica	MD01G1025900.v1.1 MD15G1327300.v1.1
prunus_persica	Prupe.6G181600_v2.0.a1
pyrus_communis	pycom395g00020
rosa_chinensis	RchiOBHm_Chr2g0115111
rosa_laevigata	RLG00000018159
rosa_multiflora	Rmu_sc0002784.1_g000010
rosa_roxburghii	Rroxscaffold_2G00130590
rosa_rugosa	Rorug02G0193600 Rorug02G0193700
rosa_samantha	Rh2AG252000 Rh2AG252100 Rh2BG261600 Rh2BG261700 Rh2CG256600 Rh2CG256700 Rh2DG260200 Rh2DG260300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	497, 505
AclWI	GGATC	3 cut(s)	186, 881, 991
AcuI	CTGAAG	2 cut(s)	90, 1107
AcyI	GRCGYC	1 cut(s)	461
AfaI	GTAC	2 cut(s)	844, 964
AfiI	CCNNNNNNNGG	2 cut(s)	278, 293
AflII	CTTAAG	1 cut(s)	310
AflIII	ACRYGT	1 cut(s)	954
AgsI	TTSAA	1 cut(s)	395
AjiI	CACGTC	1 cut(s)	955
Alw21I	GWGCWC	2 cut(s)	96, 925
Alw26I	GTCTC	2 cut(s)	174, 468
Alw44I	GTGCAC	1 cut(s)	921
AlwI	GGATC	3 cut(s)	186, 881, 991
AoxI	GGCC	2 cut(s)	630, 803
ApaLI	GTGCAC	1 cut(s)	921
ApeKI	GCWGC	3 cut(s)	65, 484, 611
ArsI	GACNNNNNNTTYG	2 cut(s)	685, 717
AspLEI	GCGC	1 cut(s)	554
AspS9I	GGNCC	2 cut(s)	526, 631
AsuHPI	GGTGA	1 cut(s)	413
AsuNHI	GCTAGC	1 cut(s)	815
AvaII	GGWCC	1 cut(s)	526
BaeGI	GKGCMC	1 cut(s)	925
BaeI	ACNNNNGTAYC	2 cut(s)	954, 987
BanII	GRGCYC	2 cut(s)	96, 299
BarI	GAAGNNNNNNTAC	1 cut(s)	1080
Bbv12I	GWGCWC	2 cut(s)	96, 925
BbvI	GCAGC	3 cut(s)	77, 496, 598
BccI	CCATC	1 cut(s)	1031
BcgI	CGANNNNNNTGC	2 cut(s)	104, 138
BclI	TGATCA	3 cut(s)	618, 769, 907
BcoDI	GTCTC	2 cut(s)	174, 468
BfaI	CTAG	3 cut(s)	816, 887, 1028
BfmI	CTRYAG	1 cut(s)	540
BfoI	RGCGCY	1 cut(s)	555
BfrI	CTTAAG	1 cut(s)	310
BisI	GCNGC	4 cut(s)	66, 485, 497, 612
BlsI	GCNGC	4 cut(s)	67, 486, 498, 613
BmcAI	AGTACT	1 cut(s)	844
Bme18I	GGWCC	1 cut(s)	526
BmgBI	CACGTC	1 cut(s)	955
BmgT120I	GGNCC	2 cut(s)	526, 631
BmiI	GGNNCC	3 cut(s)	298, 512, 633
BmsI	GCATC	3 cut(s)	124, 382, 471
BmtI	GCTAGC	1 cut(s)	819
BplI	GAGNNNNNCTC	2 cut(s)	499, 531
BpmI	CTGGAG	1 cut(s)	539
BpuEI	CTTGAG	1 cut(s)	80
Bsa29I	ATCGAT	1 cut(s)	876
BsaBI	GATNNNNATC	1 cut(s)	1023
BsaHI	GRCGYC	1 cut(s)	461
BsaJI	CCNNGG	3 cut(s)	13, 529, 606
Bsc4I	CCNNNNNNNGG	2 cut(s)	278, 293
Bse3DI	GCAATG	2 cut(s)	357, 826
Bse8I	GATNNNNATC	1 cut(s)	1023
BseCI	ATCGAT	1 cut(s)	876
BseDI	CCNNGG	3 cut(s)	13, 529, 606
BseGI	GGATG	1 cut(s)	1042
BseJI	GATNNNNATC	1 cut(s)	1023
BseLI	CCNNNNNNNGG	2 cut(s)	278, 293
BseMI	GCAATG	2 cut(s)	357, 826
BseMII	CTCAG	2 cut(s)	264, 738
BseRI	GAGGAG	2 cut(s)	289, 546
BseSI	GKGCMC	1 cut(s)	925
BseXI	GCAGC	3 cut(s)	77, 496, 598
BshFI	GGCC	2 cut(s)	632, 805
BshVI	ATCGAT	1 cut(s)	876
BsiHKAI	GWGCWC	2 cut(s)	96, 925
BslFI	GGGAC	1 cut(s)	965
BslI	CCNNNNNNNGG	2 cut(s)	278, 293
BsmAI	GTCTC	2 cut(s)	174, 468
BsmBI	CGTCTC	1 cut(s)	468
BsmFI	GGGAC	1 cut(s)	965
BsnI	GGCC	2 cut(s)	632, 805
Bsp1286I	GDGCHC	3 cut(s)	96, 299, 925
Bsp19I	CCATGG	1 cut(s)	13
BspACI	CCGC	2 cut(s)	497, 505
BspANI	GGCC	2 cut(s)	632, 805
BspCNI	CTCAG	2 cut(s)	265, 739
BspDI	ATCGAT	1 cut(s)	876
BspHI	TCATGA	1 cut(s)	436
BspLI	GGNNCC	3 cut(s)	298, 512, 633
BspOI	GCTAGC	1 cut(s)	819
BspPI	GGATC	3 cut(s)	186, 881, 991
BspQI	GCTCTTC	1 cut(s)	84
BspTI	CTTAAG	1 cut(s)	310
BsrDI	GCAATG	2 cut(s)	357, 826
BssECI	CCNNGG	3 cut(s)	13, 529, 606
BssNI	GRCGYC	1 cut(s)	461
BssT1I	CCWWGG	3 cut(s)	13, 529, 606
Bst4CI	ACNGT	1 cut(s)	31
Bst6I	CTCTTC	3 cut(s)	84, 471, 1083
BstACI	GRCGYC	1 cut(s)	461
BstAFI	CTTAAG	1 cut(s)	310
BstAPI	GCANNNNNTGC	1 cut(s)	493
BstC8I	GCNNGC	5 cut(s)	381, 494, 807, 817, 991
BstDEI	CTNAG	2 cut(s)	273, 747
BstDSI	CCRYGG	1 cut(s)	13
BstF5I	GGATG	1 cut(s)	1042
BstH2I	RGCGCY	1 cut(s)	555
BstHHI	GCGC	1 cut(s)	554
BstMAI	GTCTC	2 cut(s)	174, 468
BstMWI	GCNNNNNNNGC	6 cut(s)	100, 359, 493, 502, 611, 664
BstNSI	RCATGY	1 cut(s)	496
BstSFI	CTRYAG	1 cut(s)	540
BstSLI	GKGCMC	1 cut(s)	925
BstV1I	GCAGC	3 cut(s)	77, 496, 598
BstX2I	RGATCY	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	191
Bsu15I	ATCGAT	1 cut(s)	876
BsuRI	GGCC	2 cut(s)	632, 805
BsuTUI	ATCGAT	1 cut(s)	876
BtgI	CCRYGG	1 cut(s)	13
BtrI	CACGTC	1 cut(s)	955
BtsCI	GGATG	1 cut(s)	1042
BtsI	GCAGTG	1 cut(s)	487
BtsIMutI	CAGTG	1 cut(s)	487
Cac8I	GCNNGC	5 cut(s)	381, 494, 807, 817, 991
CciI	TCATGA	1 cut(s)	436
CfoI	GCGC	1 cut(s)	554
Cfr13I	GGNCC	2 cut(s)	526, 631
ClaI	ATCGAT	1 cut(s)	876
CseI	GACGC	1 cut(s)	450
Csp6I	GTAC	2 cut(s)	843, 963
CviQI	GTAC	2 cut(s)	843, 963
DdeI	CTNAG	2 cut(s)	273, 747
Eam1104I	CTCTTC	3 cut(s)	84, 471, 1083
EarI	CTCTTC	3 cut(s)	84, 471, 1083
Ecl136II	GAGCTC	1 cut(s)	94
Eco130I	CCWWGG	3 cut(s)	13, 529, 606
Eco24I	GRGCYC	2 cut(s)	96, 299
Eco47I	GGWCC	1 cut(s)	526
Eco53kI	GAGCTC	1 cut(s)	94
Eco57I	CTGAAG	2 cut(s)	90, 1107
EcoICRI	GAGCTC	1 cut(s)	94
EcoT14I	CCWWGG	3 cut(s)	13, 529, 606
EcoT38I	GRGCYC	2 cut(s)	96, 299
ErhI	CCWWGG	3 cut(s)	13, 529, 606
Esp3I	CGTCTC	1 cut(s)	468
FaqI	GGGAC	1 cut(s)	965
FbaI	TGATCA	3 cut(s)	618, 769, 907
Fnu4HI	GCNGC	4 cut(s)	66, 485, 497, 612
FokI	GGATG	1 cut(s)	1049
FriOI	GRGCYC	2 cut(s)	96, 299
Fsp4HI	GCNGC	4 cut(s)	66, 485, 497, 612
FspBI	CTAG	3 cut(s)	816, 887, 1028
GlaI	GCGC	1 cut(s)	553
GluI	GCNGC	4 cut(s)	66, 485, 497, 612
GsuI	CTGGAG	1 cut(s)	539
HaeII	RGCGCY	1 cut(s)	555
HaeIII	GGCC	2 cut(s)	632, 805
HgaI	GACGC	1 cut(s)	450
HhaI	GCGC	1 cut(s)	554
Hin1I	GRCGYC	1 cut(s)	461
Hin6I	GCGC	1 cut(s)	552
HinP1I	GCGC	1 cut(s)	552
HincII	GTYRAC	1 cut(s)	718
HindII	GTYRAC	1 cut(s)	718
HindIII	AAGCTT	1 cut(s)	656
HinfI	GANTC	4 cut(s)	200, 728, 1070, 1075
HpaI	GTTAAC	1 cut(s)	718
HphI	GGTGA	1 cut(s)	413
Hpy166II	GTNNAC	2 cut(s)	718, 923
Hpy188I	TCNGA	9 cut(s)	304, 387, 480, 567, 643, 769, 903, 1055, 1087
Hpy188III	TCNNGA	3 cut(s)	97, 437, 518
Hpy8I	GTNNAC	2 cut(s)	718, 923
Hpy99I	CGWCG	1 cut(s)	177
HpyAV	CCTTC	3 cut(s)	271, 517, 1050
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4IV	ACGT	1 cut(s)	954
HpyCH4V	TGCA	7 cut(s)	240, 362, 445, 484, 492, 682, 923
HpyF10VI	GCNNNNNNNGC	6 cut(s)	100, 359, 493, 502, 611, 664
HpyF3I	CTNAG	2 cut(s)	273, 747
HpySE526I	ACGT	1 cut(s)	954
Hsp92I	GRCGYC	1 cut(s)	461
HspAI	GCGC	1 cut(s)	552
Ksp22I	TGATCA	3 cut(s)	618, 769, 907
KspAI	GTTAAC	1 cut(s)	718
LguI	GCTCTTC	1 cut(s)	84
LmnI	GCTCC	4 cut(s)	302, 559, 883, 1040
LpnPI	CCDG	5 cut(s)	285, 393, 503, 819, 945
Lsp1109I	GCAGC	3 cut(s)	77, 496, 598
LweI	GCATC	3 cut(s)	124, 382, 471
MaeI	CTAG	3 cut(s)	816, 887, 1028
MaeII	ACGT	1 cut(s)	954
MaeIII	GTNAC	1 cut(s)	1095
MboII	GAAGA	7 cut(s)	65, 83, 101, 458, 737, 1074, 1100
MflI	RGATCY	1 cut(s)	191
MhlI	GDGCHC	3 cut(s)	96, 299, 925
MluCI	AATT	3 cut(s)	440, 637, 741
MseI	TTAA	3 cut(s)	311, 717, 789
MslI	CAYNNNNRTG	1 cut(s)	915
MspA1I	CMGCKG	2 cut(s)	68, 505
MspCI	CTTAAG	1 cut(s)	310
MwoI	GCNNNNNNNGC	6 cut(s)	100, 359, 493, 502, 611, 664
NcoI	CCATGG	1 cut(s)	13
NheI	GCTAGC	1 cut(s)	815
NlaIV	GGNNCC	3 cut(s)	298, 512, 633
NmeAIII	GCCGAG	1 cut(s)	394
NspI	RCATGY	1 cut(s)	496
PaeI	GCATGC	1 cut(s)	496
PagI	TCATGA	1 cut(s)	436
PciSI	GCTCTTC	1 cut(s)	84
PfeI	GAWTC	4 cut(s)	200, 728, 1070, 1075
PkrI	GCNGC	4 cut(s)	67, 486, 498, 613
Psp124BI	GAGCTC	1 cut(s)	96
PspN4I	GGNNCC	3 cut(s)	298, 512, 633
PspPI	GGNCC	2 cut(s)	526, 631
PsuI	RGATCY	1 cut(s)	191
PvuII	CAGCTG	1 cut(s)	68
RsaI	GTAC	2 cut(s)	844, 964
RsaNI	GTAC	2 cut(s)	843, 963
RseI	CAYNNNNRTG	1 cut(s)	915
SacI	GAGCTC	1 cut(s)	96
SapI	GCTCTTC	1 cut(s)	84
SaqAI	TTAA	3 cut(s)	311, 717, 789
SatI	GCNGC	4 cut(s)	66, 485, 497, 612
Sau96I	GGNCC	2 cut(s)	526, 631
ScaI	AGTACT	1 cut(s)	844
SduI	GDGCHC	3 cut(s)	96, 299, 925
SfaNI	GCATC	3 cut(s)	124, 382, 471
SfcI	CTRYAG	1 cut(s)	540
SinI	GGWCC	1 cut(s)	526
SmiMI	CAYNNNNRTG	1 cut(s)	915
SmlI	CTYRAG	2 cut(s)	95, 310
SmoI	CTYRAG	2 cut(s)	95, 310
SphI	GCATGC	1 cut(s)	496
Sse9I	AATT	3 cut(s)	440, 637, 741
SsiI	CCGC	2 cut(s)	497, 505
SspMI	CTAG	3 cut(s)	816, 887, 1028
SstI	GAGCTC	1 cut(s)	96
StyI	CCWWGG	3 cut(s)	13, 529, 606
TaaI	ACNGT	1 cut(s)	31
TaiI	ACGT	1 cut(s)	957
TaqI	TCGA	4 cut(s)	175, 203, 876, 1073
TasI	AATT	3 cut(s)	440, 637, 741
TatI	WGTACW	1 cut(s)	842
TauI	GCSGC	1 cut(s)	499
TfiI	GAWTC	4 cut(s)	200, 728, 1070, 1075
Tru1I	TTAA	3 cut(s)	311, 717, 789
Tru9I	TTAA	3 cut(s)	311, 717, 789
TscAI	CASTG	1 cut(s)	494
TseI	GCWGC	3 cut(s)	65, 484, 611
TspDTI	ATGAA	4 cut(s)	425, 453, 812, 837
TspRI	CASTG	1 cut(s)	494
Vha464I	CTTAAG	1 cut(s)	310
VneI	GTGCAC	1 cut(s)	921
VpaK11BI	GGWCC	1 cut(s)	526
XceI	RCATGY	1 cut(s)	496
XspI	CTAG	3 cut(s)	816, 887, 1028
ZrmI	AGTACT	1 cut(s)	844

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.