Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0009800

Physical Location & Seq

Genomic Coordinates Forward (+)

28618023 .. 28618340

Gene Structure 318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG252000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGTAGAGATCCTTGAAGAAGTTGATCCTCGAAGCTTGGAAGATGAAGAAGCTGAAGATATCAGCTACGAGGATCTCAAGAAGCGAATGTGGAAGGAACGTGTACGCTTAGAGAAGCTCAAGGAAATCCGAAAGAGCGAAGAACCCGAGTCTTTGGCTAAAGAAGAGGCGTCTGGCCGAAAGAAGATGGCTAGAGCTCAAGATTCCATACTCAAATACATGGTGAAGATCATGGAAATTTGCCAAGCACGAGGCTTCATCTATGGGATAGTTCCGAAGAAGGGGAAGCCGGTGACAGGATCGTCGGATAGCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0080167 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

EIN3

Protein Analysis

105

Amino Acids

12.18

Weight (kDa)

5.7

Isoelectric Point (pI)

55.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EIN3_DNA-bd	PF04873	24 - 105	4.6e-30	Ethylene insensitive 3, DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0009800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10120 AT5G65100
fragaria_vesca	FvH4_1g21280
malus_domestica	MD01G1025900.v1.1 MD15G1327300.v1.1
prunus_persica	Prupe.6G181600_v2.0.a1
pyrus_communis	pycom395g00020
rosa_chinensis	RchiOBHm_Chr2g0115111
rosa_laevigata	RLG00000018159
rosa_multiflora	Rmu_sc0002784.1_g000010
rosa_roxburghii	Rroxscaffold_2G00130590
rosa_rugosa	Rorug02G0193600 Rorug02G0193700
rosa_samantha	Rh2AG252000 Rh2AG252100 Rh2BG261600 Rh2BG261700 Rh2CG256600 Rh2CG256700 Rh2DG260200 Rh2DG260300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	301
AclWI	GGATC	4 cut(s)	4, 20, 81, 307
AcoI	YGGCCR	1 cut(s)	175
AcsI	RAATTY	1 cut(s)	237
AcuI	CTGAAG	1 cut(s)	75
AcyI	GRCGYC	1 cut(s)	170
AfaI	GTAC	1 cut(s)	105
AfiI	CCNNNNNNNGG	2 cut(s)	281, 296
AflIII	ACRYGT	1 cut(s)	100
AgsI	TTSAA	1 cut(s)	17
AluBI	AGCT	6 cut(s)	36, 53, 66, 118, 197, 312
AluI	AGCT	6 cut(s)	36, 53, 66, 118, 197, 312
Alw21I	GWGCWC	1 cut(s)	199
AlwI	GGATC	4 cut(s)	4, 20, 81, 307
Ama87I	CYCGRG	1 cut(s)	146
AoxI	GGCC	1 cut(s)	175
ApoI	RAATTY	1 cut(s)	237
AsuHPI	GGTGA	2 cut(s)	235, 304
AvaI	CYCGRG	1 cut(s)	146
BanII	GRGCYC	1 cut(s)	199
BauI	CACGAG	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	199
BccI	CCATC	1 cut(s)	181
BfaI	CTAG	1 cut(s)	192
BmeT110I	CYCGRG	1 cut(s)	146
BpuEI	CTTGAG	3 cut(s)	62, 104, 183
BsaHI	GRCGYC	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	2 cut(s)	281, 296
Bse118I	RCCGGY	1 cut(s)	289
BseLI	CCNNNNNNNGG	2 cut(s)	281, 296
BshFI	GGCC	1 cut(s)	177
BsiHKAI	GWGCWC	1 cut(s)	199
BsiHKCI	CYCGRG	1 cut(s)	146
BsiSI	CCGG	1 cut(s)	290
BslI	CCNNNNNNNGG	2 cut(s)	281, 296
BsnI	GGCC	1 cut(s)	177
BsoBI	CYCGRG	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp143I	GATC	5 cut(s)	9, 25, 73, 228, 299
BspANI	GGCC	1 cut(s)	177
BspPI	GGATC	4 cut(s)	4, 20, 81, 307
BsrFI	RCCGGY	1 cut(s)	289
BssAI	RCCGGY	1 cut(s)	289
BssMI	GATC	5 cut(s)	9, 25, 73, 228, 299
BssNI	GRCGYC	1 cut(s)	170
BssSI	CACGAG	1 cut(s)	249
Bst2BI	CACGAG	1 cut(s)	249
Bst6I	CTCTTC	1 cut(s)	159
BstACI	GRCGYC	1 cut(s)	170
BstDEI	CTNAG	1 cut(s)	109
BstKTI	GATC	5 cut(s)	12, 28, 76, 231, 302
BstMBI	GATC	5 cut(s)	9, 25, 73, 228, 299
BstX2I	RGATCY	2 cut(s)	9, 73
BstYI	RGATCY	2 cut(s)	9, 73
BsuRI	GGCC	1 cut(s)	177
Cfr10I	RCCGGY	1 cut(s)	289
CseI	GACGC	1 cut(s)	159
Csp6I	GTAC	1 cut(s)	104
CviAII	CATG	2 cut(s)	220, 232
CviQI	GTAC	1 cut(s)	104
DdeI	CTNAG	1 cut(s)	109
DpnI	GATC	5 cut(s)	11, 27, 75, 230, 301
DpnII	GATC	5 cut(s)	9, 25, 73, 228, 299
DrdI	GACNNNNNNGTC	1 cut(s)	301
DseDI	GACNNNNNNGTC	1 cut(s)	301
EaeI	YGGCCR	1 cut(s)	175
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Ecl136II	GAGCTC	1 cut(s)	197
Eco24I	GRGCYC	1 cut(s)	199
Eco32I	GATATC	1 cut(s)	61
Eco53kI	GAGCTC	1 cut(s)	197
Eco57I	CTGAAG	1 cut(s)	75
Eco88I	CYCGRG	1 cut(s)	146
EcoICRI	GAGCTC	1 cut(s)	197
EcoRV	GATATC	1 cut(s)	61
EcoT38I	GRGCYC	1 cut(s)	199
FaeI	CATG	2 cut(s)	223, 235
FaiI	YATR	5 cut(s)	209, 221, 233, 264, 316
FatI	CATG	2 cut(s)	219, 231
FriOI	GRGCYC	1 cut(s)	199
FspBI	CTAG	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	177
HapII	CCGG	1 cut(s)	290
HgaI	GACGC	1 cut(s)	159
Hin1I	GRCGYC	1 cut(s)	170
Hin1II	CATG	2 cut(s)	223, 235
HindIII	AAGCTT	1 cut(s)	34
HinfI	GANTC	2 cut(s)	149, 203
HpaII	CCGG	1 cut(s)	290
HphI	GGTGA	2 cut(s)	235, 304
Hpy166II	GTNNAC	1 cut(s)	104
Hpy188I	TCNGA	3 cut(s)	131, 276, 307
Hpy188III	TCNNGA	2 cut(s)	79, 200
Hpy8I	GTNNAC	1 cut(s)	104
Hpy99I	CGWCG	1 cut(s)	307
HpyAV	CCTTC	2 cut(s)	88, 274
HpyCH4IV	ACGT	1 cut(s)	100
HpyF3I	CTNAG	1 cut(s)	109
HpySE526I	ACGT	1 cut(s)	100
Hsp92I	GRCGYC	1 cut(s)	170
Hsp92II	CATG	2 cut(s)	223, 235
Kzo9I	GATC	5 cut(s)	9, 25, 73, 228, 299
LpnPI	CCDG	3 cut(s)	159, 282, 303
MaeI	CTAG	1 cut(s)	192
MaeII	ACGT	1 cut(s)	100
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	5 cut(s)	11, 27, 75, 230, 301
MboI	GATC	5 cut(s)	9, 25, 73, 228, 299
MboII	GAAGA	9 cut(s)	29, 53, 59, 68, 152, 176, 196, 238, 289
MflI	RGATCY	2 cut(s)	9, 73
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	1 cut(s)	237
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	1 cut(s)	285
MnlI	CCTC	4 cut(s)	39, 64, 160, 245
MspI	CCGG	1 cut(s)	290
NdeII	GATC	5 cut(s)	9, 25, 73, 228, 299
NlaIII	CATG	2 cut(s)	223, 235
NmuCI	GTSAC	1 cut(s)	292
PfeI	GAWTC	1 cut(s)	203
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
Psp124BI	GAGCTC	1 cut(s)	199
PsuI	RGATCY	2 cut(s)	9, 73
RsaI	GTAC	1 cut(s)	105
RsaNI	GTAC	1 cut(s)	104
SacI	GAGCTC	1 cut(s)	199
Sau3AI	GATC	5 cut(s)	9, 25, 73, 228, 299
SchI	GAGTC	1 cut(s)	158
SduI	GDGCHC	1 cut(s)	199
SetI	ASST	7 cut(s)	38, 55, 68, 103, 120, 199, 314
SmlI	CTYRAG	3 cut(s)	77, 119, 198
SmoI	CTYRAG	3 cut(s)	77, 119, 198
Sse9I	AATT	1 cut(s)	237
SspMI	CTAG	1 cut(s)	192
SstI	GAGCTC	1 cut(s)	199
TaiI	ACGT	1 cut(s)	103
TaqI	TCGA	1 cut(s)	31
TasI	AATT	1 cut(s)	237
TfiI	GAWTC	1 cut(s)	203
TseFI	GTSAC	1 cut(s)	292
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	2 cut(s)	60, 247
XapI	RAATTY	1 cut(s)	237
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.