Prupe.6G188600_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
19691152 .. 19692830
1679 bp
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UTR
Exon/CDS
Intron
Prupe.6G188600.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 294 bp
ATGTCAGTTTCATTAGAAGCTTTAGCAATGGCTGGCAAAGACTACCTTTCGATTGCTATGACTGTGGAAGAATGGGAGCGCTTGGAGCTGTCTCCTCCACATTTACTAGCGGAAGATGAAGAAGAGAAAGATGAGAGAAATTTAGGGGAACAAGTAATGGGAAAAGAAACTAAGAAAGGGAGAGAAGGAGGAGGCCAAACAAAACCAGCCATTACGGTTCGGATCGGTCAAATTGATGTCTACCCCTACCAAATTGAACCACTATCAAGCCCTTTAGATCACAAGGAACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.87

Weight (kDa)

4.63

Isoelectric Point (pI)

53.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 240
AciI CCGC 1 cut(s) 110
AclWI GGATC 1 cut(s) 230
AcsI RAATTY 1 cut(s) 139
AfeI AGCGCT 1 cut(s) 80
AgsI TTSAA 1 cut(s) 257
AluBI AGCT 2 cut(s) 20, 88
AluI AGCT 2 cut(s) 20, 88
Alw26I GTCTC 1 cut(s) 96
AlwI GGATC 1 cut(s) 230
Aor51HI AGCGCT 1 cut(s) 80
AoxI GGCC 1 cut(s) 193
ApoI RAATTY 1 cut(s) 139
AspLEI GCGC 1 cut(s) 81
BcoDI GTCTC 1 cut(s) 96
BfaI CTAG 1 cut(s) 107
BfoI RGCGCY 1 cut(s) 82
Bse3DI GCAATG 1 cut(s) 33
BseMI GCAATG 1 cut(s) 33
BseRI GAGGAG 2 cut(s) 84, 204
BshFI GGCC 1 cut(s) 195
BsmAI GTCTC 1 cut(s) 96
BsnI GGCC 1 cut(s) 195
Bsp143I GATC 2 cut(s) 222, 277
BspACI CCGC 1 cut(s) 110
BspANI GGCC 1 cut(s) 195
BspPI GGATC 1 cut(s) 230
BsrDI GCAATG 1 cut(s) 33
BssMI GATC 2 cut(s) 222, 277
Bst4CI ACNGT 3 cut(s) 64, 217, 291
Bst6I CTCTTC 1 cut(s) 117
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 1 cut(s) 171
BstH2I RGCGCY 1 cut(s) 82
BstHHI GCGC 1 cut(s) 81
BstKTI GATC 2 cut(s) 225, 280
BstMAI GTCTC 1 cut(s) 96
BstMBI GATC 2 cut(s) 222, 277
BstMWI GCNNNNNNNGC 1 cut(s) 85
BsuRI GGCC 1 cut(s) 195
Cac8I GCNNGC 1 cut(s) 34
CfoI GCGC 1 cut(s) 81
CviJI RGCY 6 cut(s) 20, 32, 88, 195, 209, 270
CviKI_1 RGCY 6 cut(s) 20, 32, 88, 195, 209, 270
DdeI CTNAG 1 cut(s) 171
DpnI GATC 2 cut(s) 224, 279
DpnII GATC 2 cut(s) 222, 277
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Eco47III AGCGCT 1 cut(s) 80
FaiI YATR 1 cut(s) 59
FalI AAGNNNNNCTT 2 cut(s) 30, 62
FblI GTMKAC 1 cut(s) 240
FspBI CTAG 1 cut(s) 107
GlaI GCGC 1 cut(s) 80
HaeII RGCGCY 1 cut(s) 82
HaeIII GGCC 1 cut(s) 195
HhaI GCGC 1 cut(s) 81
Hin6I GCGC 1 cut(s) 79
HinP1I GCGC 1 cut(s) 79
HindIII AAGCTT 1 cut(s) 18
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 1 cut(s) 222
Hpy8I GTNNAC 1 cut(s) 241
HpyAV CCTTC 1 cut(s) 179
HpyCH4III ACNGT 3 cut(s) 64, 217, 291
HpyF10VI GCNNNNNNNGC 1 cut(s) 85
HpyF3I CTNAG 1 cut(s) 171
HspAI GCGC 1 cut(s) 79
Kzo9I GATC 2 cut(s) 222, 277
LmnI GCTCC 2 cut(s) 76, 85
LpnPI CCDG 2 cut(s) 18, 219
MaeI CTAG 1 cut(s) 107
MalI GATC 2 cut(s) 224, 279
MboI GATC 2 cut(s) 222, 277
MboII GAAGA 4 cut(s) 80, 125, 131, 134
MluCI AATT 3 cut(s) 139, 231, 252
MnlI CCTC 3 cut(s) 105, 182, 185
MwoI GCNNNNNNNGC 1 cut(s) 85
NdeII GATC 2 cut(s) 222, 277
Sau3AI GATC 2 cut(s) 222, 277
SetI ASST 3 cut(s) 22, 48, 90
SgeI CNNG 6 cut(s) 45, 94, 119, 164, 218, 279
Sse9I AATT 3 cut(s) 139, 231, 252
SsiI CCGC 1 cut(s) 110
SspMI CTAG 1 cut(s) 107
TaaI ACNGT 3 cut(s) 64, 217, 291
TaqI TCGA 1 cut(s) 50
TaqII GACCGA 1 cut(s) 215
TasI AATT 3 cut(s) 139, 231, 252
TspDTI ATGAA 1 cut(s) 132
XapI RAATTY 1 cut(s) 139
XmiI GTMKAC 1 cut(s) 240
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.