Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0008342

Physical Location & Seq

Genomic Coordinates Reverse (-)

26200659 .. 26202966

Gene Structure 2308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG253600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGTCGATTGAAGCTCTGGCAATGGCAGGTACAGACTACAATGAATGTGGTATTGATCTTCGAGAGTGGGAGCGCGGTGAAGATCCACCGCCGCCATATATGTTGGCTGATGATGATGGTGATCAACAAAGTAATGATACTGATCATCACTTCTTCGAATTCAGAGAAAAGAGTAGTACTACTGCTGCTGAAAGAGATGATCTTTATTACATGAACTTCAGCAATAGGAAGCAACAAAATCCAACATGGACTCAAAACCCAATACTTATCGGTCGCTACGAAATCCAGCGCTCACATTCAAAGAGTACAAAGTACCAAAACTGCAGCAAGAATATTATCATGTCTGTCTCATTAGAAGCTTTGGCTATGGCCGGTGCAGATTGCTTTTCCGTTGCTATAGATCTTGAAGAATGGGAGCGTAGAGACTTGGAGTTGTCTCCACCACATTTACTAGCGGAAGATGATCAAGAAGAACAAGAAAAAGGAAAAGAGGAAGCAGATCACGGAAAGAAATTAAGAAGAAGCACAGAAAGAGGAGAGCAACTTCAGGTTATCAGTAAGAAAATGTGGGTTAATGTCACCAACATAGAAGCTAGCCGTTGCAACCTAGCCGGAACTAGAGAAGATTACATAGCCGATATTGGGCGATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

217

Amino Acids

24.94

Weight (kDa)

4.7

Isoelectric Point (pI)

57.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22320
prunus_persica	Prupe.6G188500_v2.0.a1 Prupe.6G188600_v2.0.a1
rosa_laevigata	RLG00000018040 RLG00000018041 RLG00000018042 RLG00000018043
rosa_roxburghii	Rroxscaffold_2G00129640 Rroxscaffold_2G00129650 Rroxscaffold_2G00129670 Rroxscaffold_2G00129680
rosa_rugosa	Rorug02G0185000 Rorug02G0185100 Rorug02G0185200
rosa_samantha	Rh2AG239500 Rh2AG239600 Rh2BG253200 Rh2BG253400 Rh2BG253600 Rh2CG243400 Rh2CG243600 Rh2CG243700 Rh2DG247500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	17
AccII	CGCG	1 cut(s)	75
AciI	CCGC	4 cut(s)	75, 89, 92, 455
AclWI	GGATC	2 cut(s)	77, 642
AcoI	YGGCCR	1 cut(s)	369
AcsI	RAATTY	1 cut(s)	158
AcuI	CTGAAG	2 cut(s)	202, 530
AfaI	GTAC	4 cut(s)	31, 178, 307, 314
AfeI	AGCGCT	1 cut(s)	290
AfiI	CCNNNNNNNGG	1 cut(s)	642
AgsI	TTSAA	3 cut(s)	11, 300, 407
AluBI	AGCT	3 cut(s)	14, 359, 593
AluI	AGCT	3 cut(s)	14, 359, 593
Alw26I	GTCTC	3 cut(s)	352, 417, 441
AlwI	GGATC	2 cut(s)	77, 642
Aor51HI	AGCGCT	1 cut(s)	290
AoxI	GGCC	1 cut(s)	369
ApeKI	GCWGC	2 cut(s)	185, 324
ApoI	RAATTY	1 cut(s)	158
AspLEI	GCGC	2 cut(s)	75, 291
AsuHPI	GGTGA	3 cut(s)	89, 131, 571
AsuII	TTCGAA	1 cut(s)	156
AsuNHI	GCTAGC	1 cut(s)	593
BbvI	GCAGC	2 cut(s)	172, 336
BccI	CCATC	1 cut(s)	110
BceAI	ACGGC	1 cut(s)	582
BclI	TGATCA	3 cut(s)	121, 142, 463
BcoDI	GTCTC	3 cut(s)	352, 417, 441
BfaI	CTAG	4 cut(s)	452, 594, 608, 618
BfmI	CTRYAG	2 cut(s)	322, 396
BfoI	RGCGCY	1 cut(s)	292
BfuAI	ACCTGC	1 cut(s)	17
BglII	AGATCT	1 cut(s)	400
BisI	GCNGC	3 cut(s)	92, 186, 325
BlsI	GCNGC	3 cut(s)	93, 187, 326
BmcAI	AGTACT	1 cut(s)	178
BmtI	GCTAGC	1 cut(s)	597
Bpu14I	TTCGAA	1 cut(s)	156
BsaBI	GATNNNNATC	2 cut(s)	120, 141
Bsc4I	CCNNNNNNNGG	1 cut(s)	642
Bse118I	RCCGGY	1 cut(s)	371
Bse3DI	GCAATG	1 cut(s)	27
Bse8I	GATNNNNATC	2 cut(s)	120, 141
BseJI	GATNNNNATC	2 cut(s)	120, 141
BseLI	CCNNNNNNNGG	1 cut(s)	642
BseMI	GCAATG	1 cut(s)	27
BseRI	GAGGAG	1 cut(s)	549
BseXI	GCAGC	2 cut(s)	172, 336
BsgI	GTGCAG	1 cut(s)	396
Bsh1236I	CGCG	1 cut(s)	75
Bsh1285I	CGRYCG	1 cut(s)	274
BshFI	GGCC	1 cut(s)	371
BsiEI	CGRYCG	1 cut(s)	274
BsiSI	CCGG	2 cut(s)	372, 612
BslI	CCNNNNNNNGG	1 cut(s)	642
BsmAI	GTCTC	3 cut(s)	352, 417, 441
BsnI	GGCC	1 cut(s)	371
Bsp119I	TTCGAA	1 cut(s)	156
Bsp143I	GATC	9 cut(s)	55, 82, 121, 142, 199, 400, 463, 499, 647
BspACI	CCGC	4 cut(s)	75, 89, 92, 455
BspANI	GGCC	1 cut(s)	371
BspFNI	CGCG	1 cut(s)	75
BspMAI	CTGCAG	1 cut(s)	326
BspMI	ACCTGC	1 cut(s)	17
BspOI	GCTAGC	1 cut(s)	597
BspPI	GGATC	2 cut(s)	77, 642
BspT104I	TTCGAA	1 cut(s)	156
BsrDI	GCAATG	1 cut(s)	27
BsrFI	RCCGGY	1 cut(s)	371
BssAI	RCCGGY	1 cut(s)	371
BssMI	GATC	9 cut(s)	55, 82, 121, 142, 199, 400, 463, 499, 647
BstBI	TTCGAA	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	595
BstFNI	CGCG	1 cut(s)	75
BstH2I	RGCGCY	1 cut(s)	292
BstHHI	GCGC	2 cut(s)	75, 291
BstKTI	GATC	9 cut(s)	58, 85, 124, 145, 202, 403, 466, 502, 650
BstMAI	GTCTC	3 cut(s)	352, 417, 441
BstMBI	GATC	9 cut(s)	55, 82, 121, 142, 199, 400, 463, 499, 647
BstMCI	CGRYCG	1 cut(s)	274
BstSFI	CTRYAG	2 cut(s)	322, 396
BstUI	CGCG	1 cut(s)	75
BstV1I	GCAGC	2 cut(s)	172, 336
BstX2I	RGATCY	2 cut(s)	82, 400
BstYI	RGATCY	2 cut(s)	82, 400
BsuRI	GGCC	1 cut(s)	371
BveI	ACCTGC	1 cut(s)	17
Cac8I	GCNNGC	1 cut(s)	595
CfoI	GCGC	2 cut(s)	75, 291
Cfr10I	RCCGGY	1 cut(s)	371
Csp6I	GTAC	4 cut(s)	30, 177, 306, 313
CspCI	CAANNNNNGTGG	2 cut(s)	28, 63
CviAII	CATG	3 cut(s)	211, 246, 340
CviJI	RGCY	9 cut(s)	14, 107, 359, 365, 371, 593, 597, 611, 635
CviKI_1	RGCY	9 cut(s)	14, 107, 359, 365, 371, 593, 597, 611, 635
CviQI	GTAC	4 cut(s)	30, 177, 306, 313
DpnI	GATC	9 cut(s)	57, 84, 123, 144, 201, 402, 465, 501, 649
DpnII	GATC	9 cut(s)	55, 82, 121, 142, 199, 400, 463, 499, 647
EaeI	YGGCCR	1 cut(s)	369
Eco47III	AGCGCT	1 cut(s)	290
Eco57I	CTGAAG	2 cut(s)	202, 530
EcoRI	GAATTC	1 cut(s)	158
FaeI	CATG	3 cut(s)	214, 249, 343
FatI	CATG	3 cut(s)	210, 245, 339
FbaI	TGATCA	3 cut(s)	121, 142, 463
Fnu4HI	GCNGC	3 cut(s)	92, 186, 325
Fsp4HI	GCNGC	3 cut(s)	92, 186, 325
FspBI	CTAG	4 cut(s)	452, 594, 608, 618
GlaI	GCGC	2 cut(s)	74, 290
GluI	GCNGC	3 cut(s)	92, 186, 325
HaeII	RGCGCY	1 cut(s)	292
HaeIII	GGCC	1 cut(s)	371
HapII	CCGG	2 cut(s)	372, 612
HhaI	GCGC	2 cut(s)	75, 291
Hin1II	CATG	3 cut(s)	214, 249, 343
Hin6I	GCGC	2 cut(s)	73, 289
HinP1I	GCGC	2 cut(s)	73, 289
HindIII	AAGCTT	1 cut(s)	357
HinfI	GANTC	1 cut(s)	250
HpaII	CCGG	2 cut(s)	372, 612
HphI	GGTGA	3 cut(s)	89, 131, 571
Hpy188I	TCNGA	1 cut(s)	164
Hpy188III	TCNNGA	4 cut(s)	62, 404, 467, 651
HpyCH4V	TGCA	3 cut(s)	324, 377, 603
Hsp92II	CATG	3 cut(s)	214, 249, 343
HspAI	GCGC	2 cut(s)	73, 289
Ksp22I	TGATCA	3 cut(s)	121, 142, 463
Kzo9I	GATC	9 cut(s)	55, 82, 121, 142, 199, 400, 463, 499, 647
LmnI	GCTCC	2 cut(s)	70, 415
LpnPI	CCDG	6 cut(s)	2, 12, 299, 385, 533, 625
Lsp1109I	GCAGC	2 cut(s)	172, 336
MaeI	CTAG	4 cut(s)	452, 594, 608, 618
MaeIII	GTNAC	1 cut(s)	577
MalI	GATC	9 cut(s)	57, 84, 123, 144, 201, 402, 465, 501, 649
MboI	GATC	9 cut(s)	55, 82, 121, 142, 199, 400, 463, 499, 647
MboII	GAAGA	8 cut(s)	50, 92, 145, 419, 470, 482, 531, 635
MflI	RGATCY	2 cut(s)	82, 400
MluCI	AATT	2 cut(s)	158, 512
MlyI	GAGTC	1 cut(s)	244
MmeI	TCCRAC	1 cut(s)	266
MnlI	CCTC	2 cut(s)	484, 527
MseI	TTAA	2 cut(s)	515, 573
MspI	CCGG	2 cut(s)	372, 612
MvnI	CGCG	1 cut(s)	75
NdeII	GATC	9 cut(s)	55, 82, 121, 142, 199, 400, 463, 499, 647
NheI	GCTAGC	1 cut(s)	593
NlaIII	CATG	3 cut(s)	214, 249, 343
NmuCI	GTSAC	1 cut(s)	577
NspV	TTCGAA	1 cut(s)	156
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PkrI	GCNGC	3 cut(s)	93, 187, 326
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
PstI	CTGCAG	1 cut(s)	326
PsuI	RGATCY	2 cut(s)	82, 400
RsaI	GTAC	4 cut(s)	31, 178, 307, 314
RsaNI	GTAC	4 cut(s)	30, 177, 306, 313
SaqAI	TTAA	2 cut(s)	515, 573
SatI	GCNGC	3 cut(s)	92, 186, 325
Sau3AI	GATC	9 cut(s)	55, 82, 121, 142, 199, 400, 463, 499, 647
ScaI	AGTACT	1 cut(s)	178
SchI	GAGTC	1 cut(s)	244
SetI	ASST	6 cut(s)	16, 31, 361, 552, 595, 609
SfcI	CTRYAG	2 cut(s)	322, 396
SfuI	TTCGAA	1 cut(s)	156
Sse9I	AATT	2 cut(s)	158, 512
SsiI	CCGC	4 cut(s)	75, 89, 92, 455
SspI	AATATT	1 cut(s)	334
SspMI	CTAG	4 cut(s)	452, 594, 608, 618
TaqI	TCGA	3 cut(s)	5, 61, 156
TaqII	GACCGA	1 cut(s)	260
TasI	AATT	2 cut(s)	158, 512
TatI	WGTACW	2 cut(s)	176, 305
TauI	GCSGC	1 cut(s)	94
Tru1I	TTAA	2 cut(s)	515, 573
Tru9I	TTAA	2 cut(s)	515, 573
TseFI	GTSAC	1 cut(s)	577
TseI	GCWGC	2 cut(s)	185, 324
Tsp45I	GTSAC	1 cut(s)	577
TspDTI	ATGAA	2 cut(s)	57, 227
TspGWI	ACGGA	2 cut(s)	379, 519
XapI	RAATTY	1 cut(s)	158
XspI	CTAG	4 cut(s)	452, 594, 608, 618
ZrmI	AGTACT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.