Rroxscaffold_2G00129650

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
65643792 .. 65644082
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00129650.1

Sequence Viewer

Length: 291 bp
ATGTCGGTTGAAGCTTATGCAATGGCAGGGATGGATTATGCGAAGTCCGGGATTGATCTAGAAGAGTTGGAGAATGGTGCTTGGAAAGAGCCTCCATATCTTCTAAGCGAGCAAAGCTTAAGCTATGGAGTTCAGATTCAGAACAATACAGGTAGTAAAGCAGACACTACGATGGCGGACAAAGAAGAACAGATGAAAGCAAGGATGCGGGCATGGGCAAAGGCTGTTGCTTCCATGAATGAGATTGTATGTCTTTCAAGGAATTGTTCATCAAAAAATGTAATCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.64

Weight (kDa)

5.1

Isoelectric Point (pI)

38.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 176, 208
AflII CTTAAG 1 cut(s) 118
AgsI TTSAA 2 cut(s) 11, 258
AluBI AGCT 3 cut(s) 14, 117, 123
AluI AGCT 3 cut(s) 14, 117, 123
AsuC2I CCSGG 1 cut(s) 49
BccI CCATC 2 cut(s) 25, 166
BcnI CCSGG 1 cut(s) 49
BfaI CTAG 1 cut(s) 59
BfrI CTTAAG 1 cut(s) 118
Bme1390I CCNGG 1 cut(s) 49
BmrFI CCNGG 1 cut(s) 49
BmsI GCATC 1 cut(s) 195
BpuMI CCSGG 1 cut(s) 49
Bse3DI GCAATG 1 cut(s) 27
BseGI GGATG 2 cut(s) 36, 210
BseMI GCAATG 1 cut(s) 27
BsiSI CCGG 1 cut(s) 48
Bsp143I GATC 1 cut(s) 55
BspACI CCGC 2 cut(s) 176, 208
BspTI CTTAAG 1 cut(s) 118
BsrDI GCAATG 1 cut(s) 27
BssMI GATC 1 cut(s) 55
Bst6I CTCTTC 1 cut(s) 57
BstAFI CTTAAG 1 cut(s) 118
BstC8I GCNNGC 2 cut(s) 110, 210
BstDEI CTNAG 1 cut(s) 104
BstF5I GGATG 2 cut(s) 36, 210
BstKTI GATC 1 cut(s) 58
BstMBI GATC 1 cut(s) 55
BstMWI GCNNNNNNNGC 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 47
BtsCI GGATG 2 cut(s) 36, 210
Cac8I GCNNGC 2 cut(s) 110, 210
CviAII CATG 2 cut(s) 213, 235
CviJI RGCY 5 cut(s) 14, 91, 117, 123, 224
CviKI_1 RGCY 5 cut(s) 14, 91, 117, 123, 224
DdeI CTNAG 1 cut(s) 104
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
EciI GGCGGA 1 cut(s) 191
FaeI CATG 2 cut(s) 216, 238
FaiI YATR 7 cut(s) 18, 39, 97, 126, 214, 236, 250
FatI CATG 2 cut(s) 212, 234
FauI CCCGC 1 cut(s) 201
FokI GGATG 2 cut(s) 43, 217
FspBI CTAG 1 cut(s) 59
HapII CCGG 1 cut(s) 48
Hin1II CATG 2 cut(s) 216, 238
HindIII AAGCTT 2 cut(s) 12, 115
HinfI GANTC 1 cut(s) 136
HpaII CCGG 1 cut(s) 48
Hpy188I TCNGA 3 cut(s) 135, 141, 287
Hpy188III TCNNGA 1 cut(s) 59
HpyCH4V TGCA 1 cut(s) 20
HpyF10VI GCNNNNNNNGC 1 cut(s) 114
HpyF3I CTNAG 1 cut(s) 104
Hsp92II CATG 2 cut(s) 216, 238
Kzo9I GATC 1 cut(s) 55
LpnPI CCDG 3 cut(s) 12, 61, 135
LweI GCATC 1 cut(s) 195
MaeI CTAG 1 cut(s) 59
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 3 cut(s) 74, 92, 197
MluCI AATT 1 cut(s) 262
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 1 cut(s) 102
MseI TTAA 1 cut(s) 119
MslI CAYNNNNRTG 1 cut(s) 170
MspCI CTTAAG 1 cut(s) 118
MspI CCGG 1 cut(s) 48
MspR9I CCNGG 1 cut(s) 49
MwoI GCNNNNNNNGC 1 cut(s) 114
NciI CCSGG 1 cut(s) 49
NdeII GATC 1 cut(s) 55
NlaIII CATG 2 cut(s) 216, 238
PfeI GAWTC 1 cut(s) 136
PfoI TCCNGGA 1 cut(s) 47
RseI CAYNNNNRTG 1 cut(s) 170
SaqAI TTAA 1 cut(s) 119
Sau3AI GATC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 49
SetI ASST 4 cut(s) 16, 119, 125, 154
SfaNI GCATC 1 cut(s) 195
SmiMI CAYNNNNRTG 1 cut(s) 170
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
Sse9I AATT 1 cut(s) 262
SsiI CCGC 2 cut(s) 176, 208
SspMI CTAG 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 47
TasI AATT 1 cut(s) 262
TfiI GAWTC 1 cut(s) 136
Tru1I TTAA 1 cut(s) 119
Tru9I TTAA 1 cut(s) 119
TspDTI ATGAA 3 cut(s) 209, 251, 258
Vha464I CTTAAG 1 cut(s) 118
XbaI TCTAGA 1 cut(s) 58
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.