Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008342

Physical Location & Seq

Genomic Coordinates Reverse (-)

24723367 .. 24726019

Gene Structure 2653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018041

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTCGATTGAAGCTCTGGCAATGGCAGGTGCAGACTACAATGAATGTGGTATTGATCTTCGAGGGTGGGAGAGCGGCGAAGATCCACCGCCGCCATATATGTTGGCTGATGATGATCGTGATCAGCAAAGTAATGATACTGATCATCACTTCTTCGAATTCAGAGAAAAGAGTAGTACTACTGCGCGCATATATGGATATGTAAACGCTCACTTTCAAAGAGTCTACAAAATACCAAAACTGCAGCAAGAATATTATCATGTCTGTCTCATTAGAAGCTTTGGCTATGGGCCTATGGCTGGTACAGATTGCTTTTCCGTTGCTATAGATCTTGAAGAATGGGAGCGTAGAGACTTGGAGTTGTCTCCACCACCACATTTACTAGCGGAAGATGAAGAAGAACAAGAAAAAGGAAAGGAGGAAGCAGATCATGGAAAGAAAGTAAGAAGAAGCACAGAAACAGGAGAGCAACTTCAGGTTATTAGTAAGAAAATGTGGGTTAATGTCACCAACATAGAAGCTAGCCATTGCAACCTAGCTGGAACGCTTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

185

Amino Acids

21.07

Weight (kDa)

4.75

Isoelectric Point (pI)

57.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22320
prunus_persica	Prupe.6G188500_v2.0.a1 Prupe.6G188600_v2.0.a1
rosa_laevigata	RLG00000018040 RLG00000018041 RLG00000018042 RLG00000018043
rosa_roxburghii	Rroxscaffold_2G00129640 Rroxscaffold_2G00129650 Rroxscaffold_2G00129670 Rroxscaffold_2G00129680
rosa_rugosa	Rorug02G0185000 Rorug02G0185100 Rorug02G0185200
rosa_samantha	Rh2AG239500 Rh2AG239600 Rh2BG253200 Rh2BG253400 Rh2BG253600 Rh2CG243400 Rh2CG243600 Rh2CG243700 Rh2DG247500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	17
Acc36I	ACCTGC	1 cut(s)	17
AccBSI	CCGCTC	1 cut(s)	75
AccI	GTMKAC	1 cut(s)	225
AccII	CGCG	1 cut(s)	187
AciI	CCGC	4 cut(s)	75, 89, 92, 386
AclWI	GGATC	1 cut(s)	77
AcsI	RAATTY	1 cut(s)	158
AcuI	CTGAAG	1 cut(s)	458
AfaI	GTAC	2 cut(s)	178, 304
AfiI	CCNNNNNNNGG	1 cut(s)	299
AgsI	TTSAA	3 cut(s)	11, 218, 335
AluBI	AGCT	4 cut(s)	14, 279, 521, 539
AluI	AGCT	4 cut(s)	14, 279, 521, 539
Alw26I	GTCTC	3 cut(s)	272, 345, 369
AlwI	GGATC	1 cut(s)	77
AoxI	GGCC	1 cut(s)	290
ApeKI	GCWGC	1 cut(s)	244
ApoI	RAATTY	1 cut(s)	158
AspLEI	GCGC	2 cut(s)	187, 189
AspS9I	GGNCC	1 cut(s)	290
AsuHPI	GGTGA	1 cut(s)	499
AsuII	TTCGAA	1 cut(s)	156
AsuNHI	GCTAGC	1 cut(s)	521
BbvI	GCAGC	1 cut(s)	256
BclI	TGATCA	2 cut(s)	121, 142
BcoDI	GTCTC	3 cut(s)	272, 345, 369
BfaI	CTAG	4 cut(s)	383, 522, 536, 553
BfmI	CTRYAG	2 cut(s)	242, 324
BfuAI	ACCTGC	1 cut(s)	17
BglII	AGATCT	1 cut(s)	328
BisI	GCNGC	3 cut(s)	76, 92, 245
BlsI	GCNGC	3 cut(s)	77, 93, 246
BmcAI	AGTACT	1 cut(s)	178
BmgT120I	GGNCC	1 cut(s)	290
BmtI	GCTAGC	1 cut(s)	525
Bpu14I	TTCGAA	1 cut(s)	156
BsaBI	GATNNNNATC	3 cut(s)	114, 120, 141
Bsc4I	CCNNNNNNNGG	1 cut(s)	299
Bse3DI	GCAATG	2 cut(s)	27, 526
Bse8I	GATNNNNATC	3 cut(s)	114, 120, 141
BseJI	GATNNNNATC	3 cut(s)	114, 120, 141
BseLI	CCNNNNNNNGG	1 cut(s)	299
BseMI	GCAATG	2 cut(s)	27, 526
BsePI	GCGCGC	1 cut(s)	185
BseXI	GCAGC	1 cut(s)	256
BsgI	GTGCAG	1 cut(s)	51
Bsh1236I	CGCG	1 cut(s)	187
BshFI	GGCC	1 cut(s)	292
BslI	CCNNNNNNNGG	1 cut(s)	299
BsmAI	GTCTC	3 cut(s)	272, 345, 369
BsnI	GGCC	1 cut(s)	292
Bsp119I	TTCGAA	1 cut(s)	156
Bsp143I	GATC	7 cut(s)	55, 82, 115, 121, 142, 328, 427
BspACI	CCGC	4 cut(s)	75, 89, 92, 386
BspANI	GGCC	1 cut(s)	292
BspFNI	CGCG	1 cut(s)	187
BspMAI	CTGCAG	1 cut(s)	246
BspMI	ACCTGC	1 cut(s)	17
BspOI	GCTAGC	1 cut(s)	525
BspPI	GGATC	1 cut(s)	77
BspT104I	TTCGAA	1 cut(s)	156
BsrBI	CCGCTC	1 cut(s)	75
BsrDI	GCAATG	2 cut(s)	27, 526
BssHII	GCGCGC	1 cut(s)	185
BssMI	GATC	7 cut(s)	55, 82, 115, 121, 142, 328, 427
BstBI	TTCGAA	1 cut(s)	156
BstC8I	GCNNGC	2 cut(s)	187, 523
BstFNI	CGCG	1 cut(s)	187
BstHHI	GCGC	2 cut(s)	187, 189
BstKTI	GATC	7 cut(s)	58, 85, 118, 124, 145, 331, 430
BstMAI	GTCTC	3 cut(s)	272, 345, 369
BstMBI	GATC	7 cut(s)	55, 82, 115, 121, 142, 328, 427
BstSFI	CTRYAG	2 cut(s)	242, 324
BstUI	CGCG	1 cut(s)	187
BstV1I	GCAGC	1 cut(s)	256
BstX2I	RGATCY	2 cut(s)	82, 328
BstYI	RGATCY	2 cut(s)	82, 328
BsuRI	GGCC	1 cut(s)	292
BveI	ACCTGC	1 cut(s)	17
Cac8I	GCNNGC	2 cut(s)	187, 523
CfoI	GCGC	2 cut(s)	187, 189
Cfr13I	GGNCC	1 cut(s)	290
Csp6I	GTAC	2 cut(s)	177, 303
CspCI	CAANNNNNGTGG	2 cut(s)	28, 63
CviAII	CATG	2 cut(s)	260, 431
CviJI	RGCY	9 cut(s)	14, 107, 279, 285, 292, 299, 521, 525, 539
CviKI_1	RGCY	9 cut(s)	14, 107, 279, 285, 292, 299, 521, 525, 539
CviQI	GTAC	2 cut(s)	177, 303
DpnI	GATC	7 cut(s)	57, 84, 117, 123, 144, 330, 429
DpnII	GATC	7 cut(s)	55, 82, 115, 121, 142, 328, 427
Eco57I	CTGAAG	1 cut(s)	458
EcoRI	GAATTC	1 cut(s)	158
FaeI	CATG	2 cut(s)	263, 434
FatI	CATG	2 cut(s)	259, 430
FbaI	TGATCA	2 cut(s)	121, 142
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	3 cut(s)	76, 92, 245
Fsp4HI	GCNGC	3 cut(s)	76, 92, 245
FspBI	CTAG	4 cut(s)	383, 522, 536, 553
GlaI	GCGC	2 cut(s)	186, 188
GluI	GCNGC	3 cut(s)	76, 92, 245
HaeIII	GGCC	1 cut(s)	292
HhaI	GCGC	2 cut(s)	187, 189
Hin1II	CATG	2 cut(s)	263, 434
Hin6I	GCGC	2 cut(s)	185, 187
HinP1I	GCGC	2 cut(s)	185, 187
HindIII	AAGCTT	1 cut(s)	277
HinfI	GANTC	1 cut(s)	222
HphI	GGTGA	1 cut(s)	499
Hpy166II	GTNNAC	2 cut(s)	205, 226
Hpy188I	TCNGA	1 cut(s)	164
Hpy188III	TCNNGA	2 cut(s)	119, 332
Hpy8I	GTNNAC	2 cut(s)	205, 226
HpyCH4V	TGCA	3 cut(s)	32, 244, 531
Hsp92II	CATG	2 cut(s)	263, 434
HspAI	GCGC	2 cut(s)	185, 187
Ksp22I	TGATCA	2 cut(s)	121, 142
Kzo9I	GATC	7 cut(s)	55, 82, 115, 121, 142, 328, 427
LmnI	GCTCC	1 cut(s)	343
LpnPI	CCDG	6 cut(s)	2, 12, 285, 447, 461, 525
Lsp1109I	GCAGC	1 cut(s)	256
MaeI	CTAG	4 cut(s)	383, 522, 536, 553
MaeIII	GTNAC	1 cut(s)	505
MalI	GATC	7 cut(s)	57, 84, 117, 123, 144, 330, 429
MbiI	CCGCTC	1 cut(s)	75
MboI	GATC	7 cut(s)	55, 82, 115, 121, 142, 328, 427
MboII	GAAGA	8 cut(s)	50, 92, 145, 347, 401, 407, 410, 459
MflI	RGATCY	2 cut(s)	82, 328
MluCI	AATT	1 cut(s)	158
MlyI	GAGTC	1 cut(s)	231
MnlI	CCTC	2 cut(s)	56, 412
MseI	TTAA	2 cut(s)	501, 549
MvnI	CGCG	1 cut(s)	187
NdeII	GATC	7 cut(s)	55, 82, 115, 121, 142, 328, 427
NheI	GCTAGC	1 cut(s)	521
NlaIII	CATG	2 cut(s)	263, 434
NmuCI	GTSAC	1 cut(s)	505
NspV	TTCGAA	1 cut(s)	156
PaqCI	CACCTGC	1 cut(s)	17
PauI	GCGCGC	1 cut(s)	185
PkrI	GCNGC	3 cut(s)	77, 93, 246
PleI	GAGTC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	230
PspPI	GGNCC	1 cut(s)	290
PstI	CTGCAG	1 cut(s)	246
PsuI	RGATCY	2 cut(s)	82, 328
PteI	GCGCGC	1 cut(s)	185
RsaI	GTAC	2 cut(s)	178, 304
RsaNI	GTAC	2 cut(s)	177, 303
SaqAI	TTAA	2 cut(s)	501, 549
SatI	GCNGC	3 cut(s)	76, 92, 245
Sau3AI	GATC	7 cut(s)	55, 82, 115, 121, 142, 328, 427
Sau96I	GGNCC	1 cut(s)	290
ScaI	AGTACT	1 cut(s)	178
SchI	GAGTC	1 cut(s)	231
SetI	ASST	7 cut(s)	16, 31, 281, 480, 523, 537, 541
SfcI	CTRYAG	2 cut(s)	242, 324
SfuI	TTCGAA	1 cut(s)	156
Sse9I	AATT	1 cut(s)	158
SsiI	CCGC	4 cut(s)	75, 89, 92, 386
SspI	AATATT	1 cut(s)	254
SspMI	CTAG	4 cut(s)	383, 522, 536, 553
TaqI	TCGA	3 cut(s)	5, 61, 156
TasI	AATT	1 cut(s)	158
TatI	WGTACW	1 cut(s)	176
TauI	GCSGC	2 cut(s)	78, 94
Tru1I	TTAA	2 cut(s)	501, 549
Tru9I	TTAA	2 cut(s)	501, 549
TseFI	GTSAC	1 cut(s)	505
TseI	GCWGC	1 cut(s)	244
Tsp45I	GTSAC	1 cut(s)	505
TspDTI	ATGAA	2 cut(s)	57, 408
TspGWI	ACGGA	1 cut(s)	307
XapI	RAATTY	1 cut(s)	158
XmiI	GTMKAC	1 cut(s)	225
XspI	CTAG	4 cut(s)	383, 522, 536, 553
ZrmI	AGTACT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.