Rroxscaffold_2G00129640

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
65639333 .. 65639712
380 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00129640.1

Sequence Viewer

Length: 240 bp
ATGTCGATTGAAGCTCTGGCAATGGCAGGTGCAGACTACAATGAATGTGGTATTGATCTTCGAGGGTGGGAGAGCGGCGAAGATCCACCGCCGCCATATATGTTGGCTGATGATGATCGTGATCAGCAAAGTAATGATACTGATCATCACTTCTTCGAATTCAGAGAAAAGAGTAGTACTACTGCCGCTGGAAGAGATTATCTTTATTACATGAAGATTAAGAAACTAAAATGCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

9.1

Weight (kDa)

4.56

Isoelectric Point (pI)

52.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 17
Acc36I ACCTGC 1 cut(s) 17
AccBSI CCGCTC 1 cut(s) 75
AciI CCGC 4 cut(s) 75, 89, 92, 186
AclWI GGATC 1 cut(s) 77
AcsI RAATTY 1 cut(s) 158
AfaI GTAC 1 cut(s) 178
AgsI TTSAA 1 cut(s) 11
AluBI AGCT 1 cut(s) 14
AluI AGCT 1 cut(s) 14
AlwI GGATC 1 cut(s) 77
ApoI RAATTY 1 cut(s) 158
AsuII TTCGAA 1 cut(s) 156
BclI TGATCA 2 cut(s) 121, 142
BfuAI ACCTGC 1 cut(s) 17
BisI GCNGC 3 cut(s) 76, 92, 186
BlsI GCNGC 3 cut(s) 77, 93, 187
BmcAI AGTACT 1 cut(s) 178
Bpu14I TTCGAA 1 cut(s) 156
BsaBI GATNNNNATC 3 cut(s) 114, 120, 141
Bse3DI GCAATG 1 cut(s) 27
Bse8I GATNNNNATC 3 cut(s) 114, 120, 141
BseJI GATNNNNATC 3 cut(s) 114, 120, 141
BseMI GCAATG 1 cut(s) 27
BsgI GTGCAG 1 cut(s) 51
Bsp119I TTCGAA 1 cut(s) 156
Bsp143I GATC 5 cut(s) 55, 82, 115, 121, 142
BspACI CCGC 4 cut(s) 75, 89, 92, 186
BspMI ACCTGC 1 cut(s) 17
BspPI GGATC 1 cut(s) 77
BspT104I TTCGAA 1 cut(s) 156
BsrBI CCGCTC 1 cut(s) 75
BsrDI GCAATG 1 cut(s) 27
BssMI GATC 5 cut(s) 55, 82, 115, 121, 142
Bst6I CTCTTC 1 cut(s) 187
BstBI TTCGAA 1 cut(s) 156
BstKTI GATC 5 cut(s) 58, 85, 118, 124, 145
BstMBI GATC 5 cut(s) 55, 82, 115, 121, 142
BstX2I RGATCY 1 cut(s) 82
BstYI RGATCY 1 cut(s) 82
BveI ACCTGC 1 cut(s) 17
Csp6I GTAC 1 cut(s) 177
CspCI CAANNNNNGTGG 2 cut(s) 28, 63
CviAII CATG 1 cut(s) 211
CviJI RGCY 2 cut(s) 14, 107
CviKI_1 RGCY 2 cut(s) 14, 107
CviQI GTAC 1 cut(s) 177
DpnI GATC 5 cut(s) 57, 84, 117, 123, 144
DpnII GATC 5 cut(s) 55, 82, 115, 121, 142
Eam1104I CTCTTC 1 cut(s) 187
EarI CTCTTC 1 cut(s) 187
EcoRI GAATTC 1 cut(s) 158
FaeI CATG 1 cut(s) 214
FaiI YATR 4 cut(s) 97, 99, 101, 212
FatI CATG 1 cut(s) 210
FbaI TGATCA 2 cut(s) 121, 142
Fnu4HI GCNGC 3 cut(s) 76, 92, 186
Fsp4HI GCNGC 3 cut(s) 76, 92, 186
GluI GCNGC 3 cut(s) 76, 92, 186
Hin1II CATG 1 cut(s) 214
Hpy188I TCNGA 2 cut(s) 164, 239
Hpy188III TCNNGA 1 cut(s) 119
HpyCH4V TGCA 1 cut(s) 32
Hsp92II CATG 1 cut(s) 214
Ksp22I TGATCA 2 cut(s) 121, 142
Kzo9I GATC 5 cut(s) 55, 82, 115, 121, 142
LpnPI CCDG 3 cut(s) 2, 12, 174
MalI GATC 5 cut(s) 57, 84, 117, 123, 144
MbiI CCGCTC 1 cut(s) 75
MboI GATC 5 cut(s) 55, 82, 115, 121, 142
MboII GAAGA 5 cut(s) 50, 92, 145, 204, 226
MflI RGATCY 1 cut(s) 82
MluCI AATT 1 cut(s) 158
MnlI CCTC 1 cut(s) 56
MseI TTAA 1 cut(s) 219
MspA1I CMGCKG 1 cut(s) 188
NdeII GATC 5 cut(s) 55, 82, 115, 121, 142
NlaIII CATG 1 cut(s) 214
NspV TTCGAA 1 cut(s) 156
PaqCI CACCTGC 1 cut(s) 17
PkrI GCNGC 3 cut(s) 77, 93, 187
PsuI RGATCY 1 cut(s) 82
RsaI GTAC 1 cut(s) 178
RsaNI GTAC 1 cut(s) 177
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 3 cut(s) 76, 92, 186
Sau3AI GATC 5 cut(s) 55, 82, 115, 121, 142
ScaI AGTACT 1 cut(s) 178
SetI ASST 2 cut(s) 16, 31
SfuI TTCGAA 1 cut(s) 156
SgeI CNNG 6 cut(s) 29, 39, 74, 131, 201, 223
Sse9I AATT 1 cut(s) 158
SsiI CCGC 4 cut(s) 75, 89, 92, 186
TaqI TCGA 3 cut(s) 5, 61, 156
TasI AATT 1 cut(s) 158
TatI WGTACW 1 cut(s) 176
TauI GCSGC 3 cut(s) 78, 94, 188
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TspDTI ATGAA 2 cut(s) 57, 227
XapI RAATTY 1 cut(s) 158
ZrmI AGTACT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.