Rorug02G0185100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0008342
Physical Location & Seq
Reverse (-)
17207823 .. 17208533
711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0185100.1

Sequence Viewer

Length: 618 bp
ATGGAAGACATTGTGTTGTACACCTCTTTGTCACTGATCTTCATCCTCTTCACCTTCAAGTTCCTCTTCTTGAATCGTCGCCGTTACGCCAACCTCCCACCAAGCCCCCCTTCACTTCCAATTCTCGGCCACCTCCATCTCCTCAAACCCCCAGTCCACCGCACCTTCCACATGCAGCCTCTCCCAAACCTACGGCCCCATCTTCTCTCTCTGAGGGCTCCTCGGCAAGTACATCGGCTACAACTGGTCCACCATGGTCTCCGCCCCCTACGGCAACCACTGGCGCAACCTCTGCCGCATTGGCGCCATCGAGATCTTCTCTTCCCAGCGCCTCAACATGTTCTCCACCATTTGAAAAAACGAGGTCAAACACTTGGTCCTCAAGCTGGCTCAGAACTATCGAGTTCAGGTGATTTCTCCAAGGTGGAAATGAAGTCCATGTTCAATGAGCTTACCTTCAACATCATAATGACGATGGTGGCGGGGAAGAGGTACTATGGCGACGACATCGACGACTCGGACAAAGAGGAGGCCACGAAGTTCAGGGAGATCATGACTGAGGTTTTCACATACGGCAGCGCGTCGAATCCGGCGGATTTCTTCCCGGTTTTGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

23.71

Weight (kDa)

9.93

Isoelectric Point (pI)

57.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 303
AccII CGCG 1 cut(s) 581
AciI CCGC 5 cut(s) 160, 262, 296, 482, 593
AcoI YGGCCR 1 cut(s) 127
AcyI GRCGYC 1 cut(s) 304
AfaI GTAC 3 cut(s) 20, 231, 494
AfiI CCNNNNNNNGG 2 cut(s) 125, 386
AflIII ACRYGT 1 cut(s) 337
AgsI TTSAA 6 cut(s) 58, 73, 355, 445, 460, 613
AjuI GAANNNNNNNTTGG 2 cut(s) 94, 126
AluBI AGCT 2 cut(s) 386, 451
AluI AGCT 2 cut(s) 386, 451
Alw26I GTCTC 1 cut(s) 263
AoxI GGCC 3 cut(s) 127, 194, 531
ApeKI GCWGC 2 cut(s) 175, 576
ArsI GACNNNNNNTTYG 4 cut(s) 138, 170, 361, 393
AspLEI GCGC 4 cut(s) 286, 306, 331, 581
AspS9I GGNCC 3 cut(s) 195, 247, 377
AsuC2I CCSGG 1 cut(s) 605
AsuHPI GGTGA 2 cut(s) 43, 422
AvaII GGWCC 2 cut(s) 247, 377
BanI GGYRCC 1 cut(s) 303
BanII GRGCYC 1 cut(s) 220
BbsI GAAGAC 1 cut(s) 12
BbvI GCAGC 2 cut(s) 187, 588
BccI CCATC 4 cut(s) 144, 207, 315, 469
BceAI ACGGC 4 cut(s) 66, 209, 287, 589
BcgI CGANNNNNNTGC 2 cut(s) 215, 249
BcnI CCSGG 1 cut(s) 605
BcoDI GTCTC 1 cut(s) 263
BfoI RGCGCY 2 cut(s) 307, 332
BglI GCCNNNNNGGC 1 cut(s) 301
BglII AGATCT 1 cut(s) 313
BisI GCNGC 3 cut(s) 176, 296, 577
BlsI GCNGC 3 cut(s) 177, 297, 578
Bme1390I CCNGG 1 cut(s) 605
Bme18I GGWCC 2 cut(s) 247, 377
BmgT120I GGNCC 3 cut(s) 195, 247, 377
BmiI GGNNCC 3 cut(s) 197, 219, 305
BmrFI CCNGG 1 cut(s) 605
BmrI ACTGGG 1 cut(s) 146
BmuI ACTGGG 1 cut(s) 146
BpiI GAAGAC 1 cut(s) 12
BplI GAGNNNNNCTC 4 cut(s) 205, 237, 303, 335
BpuEI CTTGAG 1 cut(s) 366
BpuMI CCSGG 1 cut(s) 605
BsaBI GATNNNNATC 1 cut(s) 41
BsaHI GRCGYC 1 cut(s) 304
BsaI GGTCTC 1 cut(s) 263
BsaJI CCNNGG 3 cut(s) 221, 253, 420
BsaXI ACNNNNNCTCC 2 cut(s) 327, 357
Bsc4I CCNNNNNNNGG 2 cut(s) 125, 386
Bse1I ACTGG 3 cut(s) 152, 249, 285
Bse8I GATNNNNATC 1 cut(s) 41
BseDI CCNNGG 3 cut(s) 221, 253, 420
BseGI GGATG 1 cut(s) 42
BseJI GATNNNNATC 1 cut(s) 41
BseLI CCNNNNNNNGG 2 cut(s) 125, 386
BseMII CTCAG 3 cut(s) 203, 405, 549
BseNI ACTGG 3 cut(s) 152, 249, 285
BseRI GAGGAG 3 cut(s) 131, 210, 542
BseXI GCAGC 2 cut(s) 187, 588
BseYI CCCAGC 1 cut(s) 325
Bsh1236I CGCG 1 cut(s) 581
BshFI GGCC 3 cut(s) 129, 196, 533
BshNI GGYRCC 1 cut(s) 303
BsiSI CCGG 2 cut(s) 590, 605
BslI CCNNNNNNNGG 2 cut(s) 125, 386
BsmAI GTCTC 1 cut(s) 263
BsnI GGCC 3 cut(s) 129, 196, 533
Bso31I GGTCTC 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 220
Bsp1407I TGTACA 1 cut(s) 18
Bsp143I GATC 3 cut(s) 36, 313, 549
Bsp19I CCATGG 1 cut(s) 253
BspACI CCGC 5 cut(s) 160, 262, 296, 482, 593
BspANI GGCC 3 cut(s) 129, 196, 533
BspCNI CTCAG 3 cut(s) 204, 404, 550
BspFNI CGCG 1 cut(s) 581
BspHI TCATGA 1 cut(s) 552
BspLI GGNNCC 3 cut(s) 197, 219, 305
BspT107I GGYRCC 1 cut(s) 303
BspTNI GGTCTC 1 cut(s) 263
BsrGI TGTACA 1 cut(s) 18
BsrI ACTGG 3 cut(s) 152, 249, 285
BssECI CCNNGG 3 cut(s) 221, 253, 420
BssMI GATC 3 cut(s) 36, 313, 549
BssNI GRCGYC 1 cut(s) 304
BssT1I CCWWGG 2 cut(s) 253, 420
Bst6I CTCTTC 4 cut(s) 53, 71, 326, 482
BstACI GRCGYC 1 cut(s) 304
BstAPI GCANNNNNTGC 1 cut(s) 292
BstAUI TGTACA 1 cut(s) 18
BstC8I GCNNGC 1 cut(s) 388
BstDEI CTNAG 3 cut(s) 212, 391, 558
BstDSI CCRYGG 1 cut(s) 253
BstF5I GGATG 1 cut(s) 42
BstFNI CGCG 1 cut(s) 581
BstH2I RGCGCY 2 cut(s) 307, 332
BstHHI GCGC 4 cut(s) 286, 306, 331, 581
BstKTI GATC 3 cut(s) 39, 316, 552
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 3 cut(s) 36, 313, 549
BstMWI GCNNNNNNNGC 2 cut(s) 292, 301
BstNSI RCATGY 2 cut(s) 175, 341
BstSCI CCNGG 1 cut(s) 603
BstUI CGCG 1 cut(s) 581
BstV1I GCAGC 2 cut(s) 187, 588
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 1 cut(s) 313
BstYI RGATCY 1 cut(s) 313
BsuRI GGCC 3 cut(s) 129, 196, 533
BtgI CCRYGG 1 cut(s) 253
BtsCI GGATG 1 cut(s) 42
BtsIMutI CAGTG 2 cut(s) 32, 278
Cac8I GCNNGC 1 cut(s) 388
CciI TCATGA 1 cut(s) 552
CfoI GCGC 4 cut(s) 286, 306, 331, 581
Cfr13I GGNCC 3 cut(s) 195, 247, 377
CseI GACGC 1 cut(s) 570
Csp6I GTAC 3 cut(s) 19, 230, 493
CviAII CATG 5 cut(s) 172, 254, 338, 439, 553
CviQI GTAC 3 cut(s) 19, 230, 493
DdeI CTNAG 3 cut(s) 212, 391, 558
DinI GGCGCC 1 cut(s) 305
DpnI GATC 3 cut(s) 38, 315, 551
DpnII GATC 3 cut(s) 36, 313, 549
EaeI YGGCCR 1 cut(s) 127
Eam1104I CTCTTC 4 cut(s) 53, 71, 326, 482
EarI CTCTTC 4 cut(s) 53, 71, 326, 482
EciI GGCGGA 2 cut(s) 251, 608
Eco130I CCWWGG 2 cut(s) 253, 420
Eco24I GRGCYC 1 cut(s) 220
Eco31I GGTCTC 1 cut(s) 263
Eco47I GGWCC 2 cut(s) 247, 377
EcoT14I CCWWGG 2 cut(s) 253, 420
EcoT38I GRGCYC 1 cut(s) 220
EgeI GGCGCC 1 cut(s) 305
EheI GGCGCC 1 cut(s) 305
ErhI CCWWGG 2 cut(s) 253, 420
FaeI CATG 5 cut(s) 175, 257, 341, 442, 556
FaiI YATR 8 cut(s) 173, 255, 339, 440, 467, 498, 554, 571
FalI AAGNNNNNCTT 4 cut(s) 50, 82, 94, 126
FatI CATG 5 cut(s) 171, 253, 337, 438, 552
FauI CCCGC 1 cut(s) 475
Fnu4HI GCNGC 3 cut(s) 176, 296, 577
FokI GGATG 1 cut(s) 29
FriOI GRGCYC 1 cut(s) 220
Fsp4HI GCNGC 3 cut(s) 176, 296, 577
GlaI GCGC 4 cut(s) 285, 305, 330, 580
GluI GCNGC 3 cut(s) 176, 296, 577
GsaI CCCAGC 1 cut(s) 329
HaeII RGCGCY 2 cut(s) 307, 332
HaeIII GGCC 3 cut(s) 129, 196, 533
HapII CCGG 2 cut(s) 590, 605
HgaI GACGC 1 cut(s) 570
HhaI GCGC 4 cut(s) 286, 306, 331, 581
Hin1I GRCGYC 1 cut(s) 304
Hin1II CATG 5 cut(s) 175, 257, 341, 442, 556
Hin6I GCGC 4 cut(s) 284, 304, 329, 579
HinP1I GCGC 4 cut(s) 284, 304, 329, 579
HinfI GANTC 3 cut(s) 73, 515, 586
HpaII CCGG 2 cut(s) 590, 605
HphI GGTGA 2 cut(s) 43, 422
Hpy166II GTNNAC 3 cut(s) 21, 157, 250
Hpy188I TCNGA 3 cut(s) 213, 394, 520
Hpy188III TCNNGA 3 cut(s) 70, 311, 553
Hpy8I GTNNAC 3 cut(s) 21, 157, 250
Hpy99I CGWCG 4 cut(s) 81, 506, 515, 586
HpyAV CCTTC 4 cut(s) 64, 120, 175, 466
HpyCH4V TGCA 1 cut(s) 175
HpyF10VI GCNNNNNNNGC 2 cut(s) 292, 301
HpyF3I CTNAG 3 cut(s) 212, 391, 558
Hsp92I GRCGYC 1 cut(s) 304
Hsp92II CATG 5 cut(s) 175, 257, 341, 442, 556
HspAI GCGC 4 cut(s) 284, 304, 329, 579
KasI GGCGCC 1 cut(s) 303
Kzo9I GATC 3 cut(s) 36, 313, 549
LmnI GCTCC 1 cut(s) 223
LpnPI CCDG 8 cut(s) 165, 230, 266, 339, 372, 393, 529, 603
Lsp1109I GCAGC 2 cut(s) 187, 588
MaeIII GTNAC 2 cut(s) 30, 83
MalI GATC 3 cut(s) 38, 315, 551
MboI GATC 3 cut(s) 36, 313, 549
MboII GAAGA 9 cut(s) 17, 31, 40, 58, 194, 308, 313, 499, 592
MflI RGATCY 1 cut(s) 313
MhlI GDGCHC 1 cut(s) 220
MluCI AATT 1 cut(s) 120
Mly113I GGCGCC 1 cut(s) 304
MlyI GAGTC 1 cut(s) 509
MslI CAYNNNNRTG 1 cut(s) 467
MspI CCGG 2 cut(s) 590, 605
MspR9I CCNGG 1 cut(s) 605
MvnI CGCG 1 cut(s) 581
MwoI GCNNNNNNNGC 2 cut(s) 292, 301
NarI GGCGCC 1 cut(s) 304
NciI CCSGG 1 cut(s) 605
NcoI CCATGG 1 cut(s) 253
NdeII GATC 3 cut(s) 36, 313, 549
NlaIII CATG 5 cut(s) 175, 257, 341, 442, 556
NlaIV GGNNCC 3 cut(s) 197, 219, 305
NmeAIII GCCGAG 2 cut(s) 105, 202
NmuCI GTSAC 1 cut(s) 30
NspI RCATGY 2 cut(s) 175, 341
PagI TCATGA 1 cut(s) 552
PciI ACATGT 1 cut(s) 337
PcsI WCGNNNNNNNCGW 1 cut(s) 510
PfeI GAWTC 2 cut(s) 73, 586
PkrI GCNGC 3 cut(s) 177, 297, 578
PleI GAGTC 1 cut(s) 509
PluTI GGCGCC 1 cut(s) 307
PpsI GAGTC 1 cut(s) 509
PscI ACATGT 1 cut(s) 337
PspFI CCCAGC 1 cut(s) 325
PspN4I GGNNCC 3 cut(s) 197, 219, 305
PspPI GGNCC 3 cut(s) 195, 247, 377
PsuI RGATCY 1 cut(s) 313
RsaI GTAC 3 cut(s) 20, 231, 494
RsaNI GTAC 3 cut(s) 19, 230, 493
RseI CAYNNNNRTG 1 cut(s) 467
SatI GCNGC 3 cut(s) 176, 296, 577
Sau3AI GATC 3 cut(s) 36, 313, 549
Sau96I GGNCC 3 cut(s) 195, 247, 377
SchI GAGTC 1 cut(s) 509
ScrFI CCNGG 1 cut(s) 605
SduI GDGCHC 1 cut(s) 220
SfoI GGCGCC 1 cut(s) 305
SinI GGWCC 2 cut(s) 247, 377
SmiMI CAYNNNNRTG 1 cut(s) 467
SmlI CTYRAG 1 cut(s) 381
SmoI CTYRAG 1 cut(s) 381
Sse9I AATT 1 cut(s) 120
SsiI CCGC 5 cut(s) 160, 262, 296, 482, 593
SspDI GGCGCC 1 cut(s) 303
StyD4I CCNGG 1 cut(s) 603
StyI CCWWGG 2 cut(s) 253, 420
TaqI TCGA 4 cut(s) 310, 401, 510, 584
TasI AATT 1 cut(s) 120
TatI WGTACW 2 cut(s) 18, 229
TauI GCSGC 1 cut(s) 298
TfiI GAWTC 2 cut(s) 73, 586
TscAI CASTG 2 cut(s) 39, 285
TseFI GTSAC 1 cut(s) 30
TseI GCWGC 2 cut(s) 175, 576
Tsp45I GTSAC 1 cut(s) 30
TspDTI ATGAA 2 cut(s) 31, 446
TspRI CASTG 2 cut(s) 39, 285
VpaK11BI GGWCC 2 cut(s) 247, 377
XceI RCATGY 2 cut(s) 175, 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.