Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008342

Physical Location & Seq

Genomic Coordinates Reverse (-)

24721208 .. 24721603

Gene Structure 396 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018040

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGTCGGTTGAAGCTTATGCAATCGCAGGGATGGATAATGCGAAGTCCGGGATTGATCTAGAAAAGTTGGAGTATGGTGCTTGGGAAGAGCCTCCGCCATATCTTCTAAGCGAGCAAAGCTTAAGCTATGGAGTTCAGATTCAGAACAATACAGCTAGTAAAGCAGACACTACGATGGCGGACAAAGAAGAAGAGATGAAAGCAAGGCTGCGGGCATGGGCAAAGGCTGTTGCTTCCATGAATGAGATTGTATGTCTTTCAAGGAATTGTTCTGAGGATAAAGATCGGACCTCAAAAGCTTTAGTTGATCTGATGAGGAATGAGGATTGCAAACCGTGCCAAGATCTTACAACGGAAGTTTTATACCATGCCATGGGTATACATTGCAGAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

132

Amino Acids

14.65

Weight (kDa)

4.83

Isoelectric Point (pI)

36.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22320
prunus_persica	Prupe.6G188500_v2.0.a1 Prupe.6G188600_v2.0.a1
rosa_laevigata	RLG00000018040 RLG00000018041 RLG00000018042 RLG00000018043
rosa_roxburghii	Rroxscaffold_2G00129640 Rroxscaffold_2G00129650 Rroxscaffold_2G00129670 Rroxscaffold_2G00129680
rosa_rugosa	Rorug02G0185000 Rorug02G0185100 Rorug02G0185200
rosa_samantha	Rh2AG239500 Rh2AG239600 Rh2BG253200 Rh2BG253400 Rh2BG253600 Rh2CG243400 Rh2CG243600 Rh2CG243700 Rh2DG247500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	373
AccI	GTMKAC	1 cut(s)	379
AciI	CCGC	3 cut(s)	95, 179, 211
AcsI	RAATTY	1 cut(s)	390
AfiI	CCNNNNNNNGG	1 cut(s)	373
AflII	CTTAAG	1 cut(s)	121
AgsI	TTSAA	2 cut(s)	11, 261
AluBI	AGCT	5 cut(s)	14, 120, 126, 155, 299
AluI	AGCT	5 cut(s)	14, 120, 126, 155, 299
ApeKI	GCWGC	1 cut(s)	208
ApoI	RAATTY	1 cut(s)	390
AspS9I	GGNCC	1 cut(s)	288
AsuC2I	CCSGG	1 cut(s)	49
AvaII	GGWCC	1 cut(s)	288
BbvI	GCAGC	1 cut(s)	195
BccI	CCATC	2 cut(s)	25, 169
BcnI	CCSGG	1 cut(s)	49
BfaI	CTAG	2 cut(s)	59, 156
BfrI	CTTAAG	1 cut(s)	121
BglII	AGATCT	1 cut(s)	343
BisI	GCNGC	1 cut(s)	209
BlsI	GCNGC	1 cut(s)	210
Bme1390I	CCNGG	1 cut(s)	49
Bme18I	GGWCC	1 cut(s)	288
BmgT120I	GGNCC	1 cut(s)	288
BmrFI	CCNGG	1 cut(s)	49
BpuMI	CCSGG	1 cut(s)	49
BsaBI	GATNNNNATC	1 cut(s)	282
BsaJI	CCNNGG	1 cut(s)	372
Bsc4I	CCNNNNNNNGG	1 cut(s)	373
Bse3DI	GCAATG	1 cut(s)	382
Bse8I	GATNNNNATC	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	372
BseGI	GGATG	1 cut(s)	36
BseJI	GATNNNNATC	1 cut(s)	282
BseLI	CCNNNNNNNGG	1 cut(s)	373
BseMI	GCAATG	1 cut(s)	382
BseMII	CTCAG	1 cut(s)	264
BseXI	GCAGC	1 cut(s)	195
BsiSI	CCGG	1 cut(s)	48
BslI	CCNNNNNNNGG	1 cut(s)	373
Bsp143I	GATC	4 cut(s)	55, 283, 307, 343
Bsp19I	CCATGG	1 cut(s)	372
BspACI	CCGC	3 cut(s)	95, 179, 211
BspCNI	CTCAG	1 cut(s)	265
BspQI	GCTCTTC	1 cut(s)	81
BspTI	CTTAAG	1 cut(s)	121
BsrDI	GCAATG	1 cut(s)	382
BssECI	CCNNGG	1 cut(s)	372
BssMI	GATC	4 cut(s)	55, 283, 307, 343
BssNAI	GTATAC	1 cut(s)	380
BssT1I	CCWWGG	1 cut(s)	372
Bst1107I	GTATAC	1 cut(s)	380
Bst4CI	ACNGT	1 cut(s)	336
Bst6I	CTCTTC	2 cut(s)	81, 186
BstAFI	CTTAAG	1 cut(s)	121
BstAPI	GCANNNNNTGC	1 cut(s)	336
BstC8I	GCNNGC	2 cut(s)	113, 213
BstDEI	CTNAG	2 cut(s)	107, 273
BstDSI	CCRYGG	1 cut(s)	372
BstF5I	GGATG	1 cut(s)	36
BstKTI	GATC	4 cut(s)	58, 286, 310, 346
BstMBI	GATC	4 cut(s)	55, 283, 307, 343
BstMWI	GCNNNNNNNGC	3 cut(s)	117, 161, 336
BstSCI	CCNGG	1 cut(s)	47
BstV1I	GCAGC	1 cut(s)	195
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BstZ17I	GTATAC	1 cut(s)	380
BtgI	CCRYGG	1 cut(s)	372
BtsCI	GGATG	1 cut(s)	36
Cac8I	GCNNGC	2 cut(s)	113, 213
Cfr13I	GGNCC	1 cut(s)	288
CviAII	CATG	4 cut(s)	216, 238, 368, 373
CviJI	RGCY	8 cut(s)	14, 91, 120, 126, 155, 208, 227, 299
CviKI_1	RGCY	8 cut(s)	14, 91, 120, 126, 155, 208, 227, 299
DdeI	CTNAG	2 cut(s)	107, 273
DpnI	GATC	4 cut(s)	57, 285, 309, 345
DpnII	GATC	4 cut(s)	55, 283, 307, 343
Eam1104I	CTCTTC	2 cut(s)	81, 186
EarI	CTCTTC	2 cut(s)	81, 186
EciI	GGCGGA	2 cut(s)	84, 194
Eco130I	CCWWGG	1 cut(s)	372
Eco47I	GGWCC	1 cut(s)	288
EcoT14I	CCWWGG	1 cut(s)	372
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	4 cut(s)	219, 241, 371, 376
FatI	CATG	4 cut(s)	215, 237, 367, 372
FauI	CCCGC	1 cut(s)	204
FblI	GTMKAC	1 cut(s)	379
Fnu4HI	GCNGC	1 cut(s)	209
FokI	GGATG	1 cut(s)	43
Fsp4HI	GCNGC	1 cut(s)	209
FspBI	CTAG	2 cut(s)	59, 156
GluI	GCNGC	1 cut(s)	209
HapII	CCGG	1 cut(s)	48
Hin1II	CATG	4 cut(s)	219, 241, 371, 376
HindIII	AAGCTT	3 cut(s)	12, 118, 297
HinfI	GANTC	1 cut(s)	139
HpaII	CCGG	1 cut(s)	48
Hpy166II	GTNNAC	1 cut(s)	380
Hpy188I	TCNGA	5 cut(s)	138, 144, 274, 288, 312
Hpy188III	TCNNGA	1 cut(s)	59
Hpy8I	GTNNAC	1 cut(s)	380
HpyCH4III	ACNGT	1 cut(s)	336
HpyCH4V	TGCA	3 cut(s)	20, 330, 387
HpyF10VI	GCNNNNNNNGC	3 cut(s)	117, 161, 336
HpyF3I	CTNAG	2 cut(s)	107, 273
Hsp92II	CATG	4 cut(s)	219, 241, 371, 376
Kzo9I	GATC	4 cut(s)	55, 283, 307, 343
LguI	GCTCTTC	1 cut(s)	81
LpnPI	CCDG	2 cut(s)	12, 61
Lsp1109I	GCAGC	1 cut(s)	195
MaeI	CTAG	2 cut(s)	59, 156
MalI	GATC	4 cut(s)	57, 285, 309, 345
MboI	GATC	4 cut(s)	55, 283, 307, 343
MboII	GAAGA	4 cut(s)	95, 98, 200, 203
MflI	RGATCY	1 cut(s)	343
MluCI	AATT	2 cut(s)	265, 390
MmeI	TCCRAC	1 cut(s)	48
MnlI	CCTC	5 cut(s)	102, 268, 301, 309, 316
MseI	TTAA	2 cut(s)	122, 394
MslI	CAYNNNNRTG	1 cut(s)	173
MspCI	CTTAAG	1 cut(s)	121
MspI	CCGG	1 cut(s)	48
MspR9I	CCNGG	1 cut(s)	49
MwoI	GCNNNNNNNGC	3 cut(s)	117, 161, 336
NciI	CCSGG	1 cut(s)	49
NcoI	CCATGG	1 cut(s)	372
NdeII	GATC	4 cut(s)	55, 283, 307, 343
NlaIII	CATG	4 cut(s)	219, 241, 371, 376
PciSI	GCTCTTC	1 cut(s)	81
PfeI	GAWTC	1 cut(s)	139
PflMI	CCANNNNNTGG	1 cut(s)	373
PfoI	TCCNGGA	1 cut(s)	47
PkrI	GCNGC	1 cut(s)	210
PspPI	GGNCC	1 cut(s)	288
PsuI	RGATCY	1 cut(s)	343
RseI	CAYNNNNRTG	1 cut(s)	173
SapI	GCTCTTC	1 cut(s)	81
SaqAI	TTAA	2 cut(s)	122, 394
SatI	GCNGC	1 cut(s)	209
Sau3AI	GATC	4 cut(s)	55, 283, 307, 343
Sau96I	GGNCC	1 cut(s)	288
ScrFI	CCNGG	1 cut(s)	49
SetI	ASST	6 cut(s)	16, 122, 128, 157, 293, 301
SinI	GGWCC	1 cut(s)	288
SmiMI	CAYNNNNRTG	1 cut(s)	173
SmlI	CTYRAG	1 cut(s)	121
SmoI	CTYRAG	1 cut(s)	121
Sse9I	AATT	2 cut(s)	265, 390
SsiI	CCGC	3 cut(s)	95, 179, 211
SspMI	CTAG	2 cut(s)	59, 156
StyD4I	CCNGG	1 cut(s)	47
StyI	CCWWGG	1 cut(s)	372
TaaI	ACNGT	1 cut(s)	336
TasI	AATT	2 cut(s)	265, 390
TfiI	GAWTC	1 cut(s)	139
Tru1I	TTAA	2 cut(s)	122, 394
Tru9I	TTAA	2 cut(s)	122, 394
TseI	GCWGC	1 cut(s)	208
TspDTI	ATGAA	2 cut(s)	212, 254
TspGWI	ACGGA	1 cut(s)	368
Van91I	CCANNNNNTGG	1 cut(s)	373
Vha464I	CTTAAG	1 cut(s)	121
VpaK11BI	GGWCC	1 cut(s)	288
XapI	RAATTY	1 cut(s)	390
XbaI	TCTAGA	1 cut(s)	58
XmiI	GTMKAC	1 cut(s)	379
XspI	CTAG	2 cut(s)	59, 156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.