Rorug02G0185000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0008342
Physical Location & Seq
Reverse (-)
17207000 .. 17207795
796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0185000.1

Sequence Viewer

Length: 633 bp
ATGAGCGAGTTGGGGAAGAAGAGTGATGCATTTCTTCAAGGTCTCATTGATGAGCGTAAAGGAGTTAACAGAACCACCATGATTGACCATTTGCTTTCTCTGCAAGAATCACAGCCCGAGTACTACACTGATCAAATCATCAAAGGGCTTATAATGGTATTACTACAGGTGGGAACCGATACATCAGCGGTGACACTGGAATGGATTATGTCAAATCTTCTTAACCATCCTCATGTGTTGAAAGAGGCTAGAGCCGAATTGGACTCTCATCTCGGCTTGGATCACTTGGTGGACGAACCCGATGTCTCCAAATTTCCATACCTACAGAGCATTATTTCTGAAACACTTCGGCTTTATCCGCCGCCGCTTTTGGTGCCGCATTTATCGTCCAATGATTGCATGATCGGGGGATTCGATGTGCCTCGTGACACAATGGTAATGGTTAATGCGTGGGCAATACATAGAGATGCTGAGTTGTGGGATGATCTTGAAAGCTTTAAGCCCGAGAGGTTCAAAAATGGCGAGCATGACTCATACAAACTCATGCCATTTGGACTGGGAAGAAGGGCTTGCCCTGGAATGAGTCTAGCCCAACGTGTGGTAGGCCTAACTTTGAGGTCGTTGATTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

23.75

Weight (kDa)

5.31

Isoelectric Point (pI)

46.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 23 - 210 2.3e-54 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 152
AccB1I GGYRCC 1 cut(s) 373
AccB7I CCANNNNNTGG 1 cut(s) 598
AciI CCGC 5 cut(s) 188, 359, 362, 365, 377
AclWI GGATC 1 cut(s) 288
AcsI RAATTY 1 cut(s) 311
AdeI CACNNNGTG 1 cut(s) 289
AfaI GTAC 1 cut(s) 122
AfiI CCNNNNNNNGG 1 cut(s) 598
AflIII ACRYGT 1 cut(s) 595
AgsI TTSAA 5 cut(s) 38, 241, 491, 514, 629
AjnI CCWGG 1 cut(s) 574
AluBI AGCT 1 cut(s) 495
AluI AGCT 1 cut(s) 495
Alw26I GTCTC 2 cut(s) 47, 310
AlwI GGATC 1 cut(s) 288
Ama87I CYCGRG 2 cut(s) 116, 503
AoxI GGCC 1 cut(s) 604
ApoI RAATTY 1 cut(s) 311
ArsI GACNNNNNNTTYG 2 cut(s) 288, 320
Asp700I GAANNNNTTC 1 cut(s) 345
AsuHPI GGTGA 1 cut(s) 202
AvaI CYCGRG 2 cut(s) 116, 503
BanI GGYRCC 1 cut(s) 373
BauI CACGAG 1 cut(s) 423
BccI CCATC 1 cut(s) 234
BciT130I CCWGG 1 cut(s) 576
BclI TGATCA 1 cut(s) 130
BcoDI GTCTC 2 cut(s) 47, 310
BfaI CTAG 2 cut(s) 249, 587
BfmI CTRYAG 2 cut(s) 164, 323
BisI GCNGC 3 cut(s) 362, 365, 377
BlsI GCNGC 3 cut(s) 363, 366, 378
BmcAI AGTACT 1 cut(s) 122
Bme1390I CCNGG 1 cut(s) 576
BmeT110I CYCGRG 2 cut(s) 116, 503
BmiI GGNNCC 2 cut(s) 175, 375
BmrFI CCNGG 1 cut(s) 576
BmrI ACTGGG 1 cut(s) 566
BmsI GCATC 2 cut(s) 16, 457
BmuI ACTGGG 1 cut(s) 566
BplI GAGNNNNNCTC 2 cut(s) 515, 547
BsaI GGTCTC 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 574
Bsc4I CCNNNNNNNGG 1 cut(s) 598
Bse1I ACTGG 2 cut(s) 201, 561
BseBI CCWGG 1 cut(s) 576
BseDI CCNNGG 1 cut(s) 574
BseGI GGATG 2 cut(s) 226, 487
BseLI CCNNNNNNNGG 1 cut(s) 598
BseMII CTCAG 1 cut(s) 462
BseNI ACTGG 2 cut(s) 201, 561
BshFI GGCC 1 cut(s) 606
BshNI GGYRCC 1 cut(s) 373
BsiHKCI CYCGRG 2 cut(s) 116, 503
BslI CCNNNNNNNGG 1 cut(s) 598
BsmAI GTCTC 2 cut(s) 47, 310
BsnI GGCC 1 cut(s) 606
Bso31I GGTCTC 1 cut(s) 47
BsoBI CYCGRG 2 cut(s) 116, 503
Bsp143I GATC 4 cut(s) 130, 280, 402, 484
BspACI CCGC 5 cut(s) 188, 359, 362, 365, 377
BspANI GGCC 1 cut(s) 606
BspCNI CTCAG 1 cut(s) 463
BspLI GGNNCC 2 cut(s) 175, 375
BspPI GGATC 1 cut(s) 288
BspT107I GGYRCC 1 cut(s) 373
BspTNI GGTCTC 1 cut(s) 47
BsrI ACTGG 2 cut(s) 201, 561
BssECI CCNNGG 1 cut(s) 574
BssMI GATC 4 cut(s) 130, 280, 402, 484
BssSI CACGAG 1 cut(s) 423
Bst2BI CACGAG 1 cut(s) 423
Bst2UI CCWGG 1 cut(s) 576
Bst6I CTCTTC 1 cut(s) 14
BstC8I GCNNGC 2 cut(s) 524, 571
BstDEI CTNAG 1 cut(s) 471
BstF5I GGATG 2 cut(s) 226, 487
BstKTI GATC 4 cut(s) 133, 283, 405, 487
BstMAI GTCTC 2 cut(s) 47, 310
BstMBI GATC 4 cut(s) 130, 280, 402, 484
BstMWI GCNNNNNNNGC 3 cut(s) 100, 358, 373
BstNI CCWGG 1 cut(s) 576
BstSCI CCNGG 1 cut(s) 574
BstSFI CTRYAG 2 cut(s) 164, 323
BsuRI GGCC 1 cut(s) 606
BtsCI GGATG 2 cut(s) 226, 487
BtsIMutI CAGTG 2 cut(s) 126, 194
Cac8I GCNNGC 2 cut(s) 524, 571
Csp6I GTAC 1 cut(s) 121
CspCI CAANNNNNGTGG 2 cut(s) 64, 99
CviAII CATG 5 cut(s) 79, 233, 400, 527, 544
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 1 cut(s) 471
DpnI GATC 4 cut(s) 132, 282, 404, 486
DpnII GATC 4 cut(s) 130, 280, 402, 484
DraIII CACNNNGTG 1 cut(s) 289
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
EciI GGCGGA 1 cut(s) 348
Eco147I AGGCCT 1 cut(s) 606
Eco31I GGTCTC 1 cut(s) 47
Eco88I CYCGRG 2 cut(s) 116, 503
EcoRII CCWGG 1 cut(s) 574
EcoT22I ATGCAT 1 cut(s) 31
FaeI CATG 5 cut(s) 82, 236, 403, 530, 547
FalI AAGNNNNNCTT 2 cut(s) 553, 585
FatI CATG 5 cut(s) 78, 232, 399, 526, 543
FbaI TGATCA 1 cut(s) 130
Fnu4HI GCNGC 3 cut(s) 362, 365, 377
FokI GGATG 2 cut(s) 213, 494
Fsp4HI GCNGC 3 cut(s) 362, 365, 377
FspBI CTAG 2 cut(s) 249, 587
GluI GCNGC 3 cut(s) 362, 365, 377
HaeIII GGCC 1 cut(s) 606
Hin1II CATG 5 cut(s) 82, 236, 403, 530, 547
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HindIII AAGCTT 1 cut(s) 493
HinfI GANTC 6 cut(s) 107, 263, 411, 530, 583, 625
HpaI GTTAAC 1 cut(s) 67
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 2 cut(s) 67, 292
Hpy188I TCNGA 1 cut(s) 340
Hpy188III TCNNGA 2 cut(s) 425, 488
Hpy8I GTNNAC 2 cut(s) 67, 292
HpyAV CCTTC 1 cut(s) 558
HpyCH4IV ACGT 1 cut(s) 595
HpyCH4V TGCA 3 cut(s) 29, 103, 399
HpyF10VI GCNNNNNNNGC 3 cut(s) 100, 358, 373
HpyF3I CTNAG 1 cut(s) 471
HpySE526I ACGT 1 cut(s) 595
Hsp92II CATG 5 cut(s) 82, 236, 403, 530, 547
Ksp22I TGATCA 1 cut(s) 130
KspAI GTTAAC 1 cut(s) 67
Kzo9I GATC 4 cut(s) 130, 280, 402, 484
LpnPI CCDG 5 cut(s) 152, 182, 542, 561, 588
LweI GCATC 2 cut(s) 16, 457
MaeI CTAG 2 cut(s) 249, 587
MaeII ACGT 1 cut(s) 595
MaeIII GTNAC 2 cut(s) 190, 425
MalI GATC 4 cut(s) 132, 282, 404, 486
MboI GATC 4 cut(s) 130, 280, 402, 484
MboII GAAGA 5 cut(s) 26, 28, 31, 209, 573
MluCI AATT 2 cut(s) 257, 311
MlyI GAGTC 3 cut(s) 257, 524, 592
MnlI CCTC 5 cut(s) 238, 240, 432, 501, 609
Mph1103I ATGCAT 1 cut(s) 31
MroXI GAANNNNTTC 1 cut(s) 345
MseI TTAA 4 cut(s) 66, 222, 444, 498
MslI CAYNNNNRTG 3 cut(s) 199, 231, 465
MspA1I CMGCKG 1 cut(s) 188
MspR9I CCNGG 1 cut(s) 576
MvaI CCWGG 1 cut(s) 576
MwoI GCNNNNNNNGC 3 cut(s) 100, 358, 373
NdeII GATC 4 cut(s) 130, 280, 402, 484
NlaIII CATG 5 cut(s) 82, 236, 403, 530, 547
NlaIV GGNNCC 2 cut(s) 175, 375
NmeAIII GCCGAG 1 cut(s) 252
NmuCI GTSAC 2 cut(s) 190, 425
NsiI ATGCAT 1 cut(s) 31
PceI AGGCCT 1 cut(s) 606
PcsI WCGNNNNNNNCGW 1 cut(s) 411
PdmI GAANNNNTTC 1 cut(s) 345
PfeI GAWTC 3 cut(s) 107, 411, 625
PflMI CCANNNNNTGG 1 cut(s) 598
PkrI GCNGC 3 cut(s) 363, 366, 378
PleI GAGTC 3 cut(s) 257, 524, 591
PpsI GAGTC 3 cut(s) 257, 524, 591
PsiI TTATAA 1 cut(s) 152
Psp6I CCWGG 1 cut(s) 574
PspGI CCWGG 1 cut(s) 574
PspN4I GGNNCC 2 cut(s) 175, 375
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
RseI CAYNNNNRTG 3 cut(s) 199, 231, 465
SaqAI TTAA 4 cut(s) 66, 222, 444, 498
SatI GCNGC 3 cut(s) 362, 365, 377
Sau3AI GATC 4 cut(s) 130, 280, 402, 484
ScaI AGTACT 1 cut(s) 122
SchI GAGTC 3 cut(s) 257, 524, 592
ScrFI CCNGG 1 cut(s) 576
SetI ASST 7 cut(s) 43, 171, 324, 497, 512, 598, 620
SfaNI GCATC 2 cut(s) 16, 457
SfcI CTRYAG 2 cut(s) 164, 323
SmiMI CAYNNNNRTG 3 cut(s) 199, 231, 465
Sse9I AATT 2 cut(s) 257, 311
SseBI AGGCCT 1 cut(s) 606
SsiI CCGC 5 cut(s) 188, 359, 362, 365, 377
SspMI CTAG 2 cut(s) 249, 587
StuI AGGCCT 1 cut(s) 606
StyD4I CCNGG 1 cut(s) 574
TaiI ACGT 1 cut(s) 598
TaqI TCGA 1 cut(s) 414
TasI AATT 2 cut(s) 257, 311
TatI WGTACW 1 cut(s) 120
TauI GCSGC 3 cut(s) 364, 367, 379
TfiI GAWTC 3 cut(s) 107, 411, 625
Tru1I TTAA 4 cut(s) 66, 222, 444, 498
Tru9I TTAA 4 cut(s) 66, 222, 444, 498
TscAI CASTG 2 cut(s) 133, 201
TseFI GTSAC 2 cut(s) 190, 425
Tsp45I GTSAC 2 cut(s) 190, 425
TspRI CASTG 2 cut(s) 133, 201
Van91I CCANNNNNTGG 1 cut(s) 598
XapI RAATTY 1 cut(s) 311
XmnI GAANNNNTTC 1 cut(s) 345
XspI CTAG 2 cut(s) 249, 587
ZrmI AGTACT 1 cut(s) 122
Zsp2I ATGCAT 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.