RLG00000018042

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0008342
Physical Location & Seq
Reverse (-)
24727882 .. 24730065
2184 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018042

Sequence Viewer

Length: 561 bp
ATGTCTGTCTCATTAGAAGCTTTGGCTATGGCTGGTACAGATTGCTTTTCCGTTGCTATAGATCTTGAAGAATGGGAGCGTAGAGACTTGGAGTTGTCTCCACCACATTTACTAGCTGAAGATGAAGAAGAACAAGAAAAAGGAAAAGAGGAAGCAGATCATGGAAAGAAATTAAGAAGAAACACAGAAAGAGGAGAGCAACTTCAGGTTATTAGTAAGAAGATAAAGAAAGAAAAAAAAAAGCTAGTTGGAATACTTGAGAAAAAAATGTCGGTTGAAGCTTATGCAATGGCAGGGATGGATTTTGCGAAGTCCGGGATTGATCTAGAAAAGTTGGAGTATGGTGCTTGGGAAGAGCCTCCGCCATATCTTCTAAGCGAGCAAAGCTTAAGCTATGAAGTTCAGATTCAGAACAATACAGCTAGTAAAGCAGACACTACGATGGTGGACAAAGAAGAAGAGATGAAAGCAAGGCTGCGGGCATGGGCAAAGGCTGTTGCTTCCATGAATGAGATTGTGTGTCTTTCAAGGAATTGTTCATCAAAAAATGTAATTAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

21.07

Weight (kDa)

5.14

Isoelectric Point (pI)

48.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 362, 478
AcuI CTGAAG 2 cut(s) 138, 188
AfaI GTAC 1 cut(s) 37
AflII CTTAAG 1 cut(s) 388
AgsI TTSAA 3 cut(s) 68, 278, 528
AluBI AGCT 7 cut(s) 20, 116, 244, 281, 387, 393, 422
AluI AGCT 7 cut(s) 20, 116, 244, 281, 387, 393, 422
Alw26I GTCTC 3 cut(s) 13, 78, 102
ApeKI GCWGC 1 cut(s) 475
AsuC2I CCSGG 1 cut(s) 316
BbvI GCAGC 1 cut(s) 462
BccI CCATC 2 cut(s) 292, 436
BcnI CCSGG 1 cut(s) 316
BcoDI GTCTC 3 cut(s) 13, 78, 102
BfaI CTAG 4 cut(s) 113, 245, 326, 423
BfmI CTRYAG 1 cut(s) 57
BfrI CTTAAG 1 cut(s) 388
BglII AGATCT 1 cut(s) 61
BisI GCNGC 1 cut(s) 476
BlsI GCNGC 1 cut(s) 477
Bme1390I CCNGG 1 cut(s) 316
BmrFI CCNGG 1 cut(s) 316
BpuEI CTTGAG 1 cut(s) 278
BpuMI CCSGG 1 cut(s) 316
Bse3DI GCAATG 1 cut(s) 294
BseGI GGATG 1 cut(s) 303
BseMI GCAATG 1 cut(s) 294
BseRI GAGGAG 1 cut(s) 207
BseXI GCAGC 1 cut(s) 462
BsiSI CCGG 1 cut(s) 315
BsmAI GTCTC 3 cut(s) 13, 78, 102
Bsp143I GATC 3 cut(s) 61, 157, 322
BspACI CCGC 2 cut(s) 362, 478
BspQI GCTCTTC 1 cut(s) 348
BspTI CTTAAG 1 cut(s) 388
BsrDI GCAATG 1 cut(s) 294
BssMI GATC 3 cut(s) 61, 157, 322
Bst6I CTCTTC 2 cut(s) 348, 453
BstAFI CTTAAG 1 cut(s) 388
BstC8I GCNNGC 2 cut(s) 380, 480
BstDEI CTNAG 1 cut(s) 374
BstF5I GGATG 1 cut(s) 303
BstKTI GATC 3 cut(s) 64, 160, 325
BstMAI GTCTC 3 cut(s) 13, 78, 102
BstMBI GATC 3 cut(s) 61, 157, 322
BstMWI GCNNNNNNNGC 2 cut(s) 384, 428
BstSCI CCNGG 1 cut(s) 314
BstSFI CTRYAG 1 cut(s) 57
BstV1I GCAGC 1 cut(s) 462
BstX2I RGATCY 1 cut(s) 61
BstYI RGATCY 1 cut(s) 61
BtsCI GGATG 1 cut(s) 303
Cac8I GCNNGC 2 cut(s) 380, 480
Csp6I GTAC 1 cut(s) 36
CviAII CATG 3 cut(s) 161, 483, 505
CviQI GTAC 1 cut(s) 36
DdeI CTNAG 1 cut(s) 374
DpnI GATC 3 cut(s) 63, 159, 324
DpnII GATC 3 cut(s) 61, 157, 322
Eam1104I CTCTTC 2 cut(s) 348, 453
EarI CTCTTC 2 cut(s) 348, 453
EciI GGCGGA 1 cut(s) 351
Eco57I CTGAAG 2 cut(s) 138, 188
FaeI CATG 3 cut(s) 164, 486, 508
FaiI YATR 9 cut(s) 29, 59, 162, 285, 342, 367, 396, 484, 506
FatI CATG 3 cut(s) 160, 482, 504
FauI CCCGC 1 cut(s) 471
Fnu4HI GCNGC 1 cut(s) 476
FokI GGATG 1 cut(s) 310
Fsp4HI GCNGC 1 cut(s) 476
FspBI CTAG 4 cut(s) 113, 245, 326, 423
GluI GCNGC 1 cut(s) 476
HapII CCGG 1 cut(s) 315
Hin1II CATG 3 cut(s) 164, 486, 508
HindIII AAGCTT 3 cut(s) 18, 279, 385
HinfI GANTC 1 cut(s) 406
HpaII CCGG 1 cut(s) 315
Hpy166II GTNNAC 1 cut(s) 448
Hpy188I TCNGA 2 cut(s) 405, 411
Hpy188III TCNNGA 2 cut(s) 65, 326
Hpy8I GTNNAC 1 cut(s) 448
HpyCH4V TGCA 1 cut(s) 287
HpyF10VI GCNNNNNNNGC 2 cut(s) 384, 428
HpyF3I CTNAG 1 cut(s) 374
Hsp92II CATG 3 cut(s) 164, 486, 508
Kzo9I GATC 3 cut(s) 61, 157, 322
LguI GCTCTTC 1 cut(s) 348
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 4 cut(s) 18, 191, 279, 328
Lsp1109I GCAGC 1 cut(s) 462
MaeI CTAG 4 cut(s) 113, 245, 326, 423
MalI GATC 3 cut(s) 63, 159, 324
MboI GATC 3 cut(s) 61, 157, 322
MflI RGATCY 1 cut(s) 61
MluCI AATT 3 cut(s) 170, 532, 552
MmeI TCCRAC 2 cut(s) 229, 315
MnlI CCTC 3 cut(s) 142, 185, 369
MseI TTAA 2 cut(s) 173, 389
MslI CAYNNNNRTG 1 cut(s) 440
MspCI CTTAAG 1 cut(s) 388
MspI CCGG 1 cut(s) 315
MspR9I CCNGG 1 cut(s) 316
MwoI GCNNNNNNNGC 2 cut(s) 384, 428
NciI CCSGG 1 cut(s) 316
NdeII GATC 3 cut(s) 61, 157, 322
NlaIII CATG 3 cut(s) 164, 486, 508
PciSI GCTCTTC 1 cut(s) 348
PfeI GAWTC 1 cut(s) 406
PfoI TCCNGGA 1 cut(s) 314
PkrI GCNGC 1 cut(s) 477
PsuI RGATCY 1 cut(s) 61
RsaI GTAC 1 cut(s) 37
RsaNI GTAC 1 cut(s) 36
RseI CAYNNNNRTG 1 cut(s) 440
SapI GCTCTTC 1 cut(s) 348
SaqAI TTAA 2 cut(s) 173, 389
SatI GCNGC 1 cut(s) 476
Sau3AI GATC 3 cut(s) 61, 157, 322
ScrFI CCNGG 1 cut(s) 316
SetI ASST 8 cut(s) 22, 118, 210, 246, 283, 389, 395, 424
SfcI CTRYAG 1 cut(s) 57
SmiMI CAYNNNNRTG 1 cut(s) 440
SmlI CTYRAG 2 cut(s) 257, 388
SmoI CTYRAG 2 cut(s) 257, 388
Sse9I AATT 3 cut(s) 170, 532, 552
SsiI CCGC 2 cut(s) 362, 478
SspMI CTAG 4 cut(s) 113, 245, 326, 423
StyD4I CCNGG 1 cut(s) 314
TasI AATT 3 cut(s) 170, 532, 552
TfiI GAWTC 1 cut(s) 406
Tru1I TTAA 2 cut(s) 173, 389
Tru9I TTAA 2 cut(s) 173, 389
TseI GCWGC 1 cut(s) 475
TspDTI ATGAA 5 cut(s) 138, 411, 479, 521, 528
TspGWI ACGGA 1 cut(s) 40
Vha464I CTTAAG 1 cut(s) 388
XbaI TCTAGA 1 cut(s) 325
XspI CTAG 4 cut(s) 113, 245, 326, 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.