Rh2AG239500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0008342
Physical Location & Seq
Reverse (-)
26109061 .. 26111244
2184 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG239500.1

Sequence Viewer

Length: 444 bp
ATGTCGGTTGAAGCTTATGCAATGGCAGGGATGGATTATGCGAAGTCCGGGATTGATCTAGAAGAGTTGGAGAATGGTGCCTGGAAAGAGCCTCCATATCTTCTAAGCGAGCAAAGCTTAAGCTATGGAGTTCAGATTCAGAACAAAACAGGTAGTAAAGCAGACACTACGATGGCGGACAAAGAAGAAGAGATGAAAGCAAGGATGCGGGCATGGGCAAAGGCTGTTGCTTCCATGAATGAGATTATGGATATGAAGGTGCTCATTATGCATCCTTTAATGCATTCACGTGAGATGAGGATAAGTGTGATATGTGGTATTACACAGCTCTACTACCCGAATCATTATATTATCCTCAAACTCCAACTCCCCAAATCATCCTCCACACAATTTCACTACTCCGCTCCCCCCTTTCAACGTTTGATATATGAGGAGCGAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.87

Weight (kDa)

6.08

Isoelectric Point (pI)

53.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 77
AccBSI CCGCTC 1 cut(s) 404
AciI CCGC 3 cut(s) 176, 208, 402
AclI AACGTT 1 cut(s) 418
AcvI CACGTG 1 cut(s) 290
AflII CTTAAG 1 cut(s) 118
AgsI TTSAA 2 cut(s) 11, 416
AjnI CCWGG 1 cut(s) 80
AluBI AGCT 4 cut(s) 14, 117, 123, 328
AluI AGCT 4 cut(s) 14, 117, 123, 328
Alw21I GWGCWC 1 cut(s) 264
AsuC2I CCSGG 1 cut(s) 49
BanI GGYRCC 1 cut(s) 77
BbrPI CACGTG 1 cut(s) 290
Bbv12I GWGCWC 1 cut(s) 264
BccI CCATC 2 cut(s) 25, 166
BciT130I CCWGG 1 cut(s) 82
BcnI CCSGG 1 cut(s) 49
BfaI CTAG 1 cut(s) 59
BfrI CTTAAG 1 cut(s) 118
Bme1390I CCNGG 2 cut(s) 49, 82
BmiI GGNNCC 1 cut(s) 79
BmrFI CCNGG 2 cut(s) 49, 82
BmsI GCATC 2 cut(s) 195, 280
BpuMI CCSGG 1 cut(s) 49
BsaAI YACGTR 1 cut(s) 290
BsaXI ACNNNNNCTCC 2 cut(s) 351, 381
Bse3DI GCAATG 1 cut(s) 27
BseBI CCWGG 1 cut(s) 82
BseGI GGATG 4 cut(s) 36, 210, 271, 377
BseMI GCAATG 1 cut(s) 27
BshNI GGYRCC 1 cut(s) 77
BsiHKAI GWGCWC 1 cut(s) 264
BsiSI CCGG 1 cut(s) 48
BsmI GAATGC 1 cut(s) 283
Bsp1286I GDGCHC 1 cut(s) 264
Bsp143I GATC 1 cut(s) 55
BspACI CCGC 3 cut(s) 176, 208, 402
BspLI GGNNCC 1 cut(s) 79
BspT107I GGYRCC 1 cut(s) 77
BspTI CTTAAG 1 cut(s) 118
BsrBI CCGCTC 1 cut(s) 404
BsrDI GCAATG 1 cut(s) 27
BssMI GATC 1 cut(s) 55
Bst2UI CCWGG 1 cut(s) 82
Bst6I CTCTTC 2 cut(s) 57, 183
BstAFI CTTAAG 1 cut(s) 118
BstBAI YACGTR 1 cut(s) 290
BstC8I GCNNGC 2 cut(s) 110, 210
BstDEI CTNAG 1 cut(s) 104
BstF5I GGATG 4 cut(s) 36, 210, 271, 377
BstKTI GATC 1 cut(s) 58
BstMBI GATC 1 cut(s) 55
BstMWI GCNNNNNNNGC 2 cut(s) 114, 268
BstNI CCWGG 1 cut(s) 82
BstSCI CCNGG 2 cut(s) 47, 80
BtsCI GGATG 4 cut(s) 36, 210, 271, 377
Cac8I GCNNGC 2 cut(s) 110, 210
CviAII CATG 2 cut(s) 213, 235
CviJI RGCY 6 cut(s) 14, 91, 117, 123, 224, 328
CviKI_1 RGCY 6 cut(s) 14, 91, 117, 123, 224, 328
DdeI CTNAG 1 cut(s) 104
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
Eam1104I CTCTTC 2 cut(s) 57, 183
EarI CTCTTC 2 cut(s) 57, 183
EciI GGCGGA 1 cut(s) 191
Eco72I CACGTG 1 cut(s) 290
EcoRII CCWGG 1 cut(s) 80
EcoT22I ATGCAT 2 cut(s) 273, 285
FaeI CATG 2 cut(s) 216, 238
FatI CATG 2 cut(s) 212, 234
FauI CCCGC 1 cut(s) 201
FokI GGATG 4 cut(s) 43, 217, 258, 364
FspBI CTAG 1 cut(s) 59
HapII CCGG 1 cut(s) 48
Hin1II CATG 2 cut(s) 216, 238
HindIII AAGCTT 2 cut(s) 12, 115
HinfI GANTC 2 cut(s) 136, 340
HpaII CCGG 1 cut(s) 48
Hpy188I TCNGA 2 cut(s) 135, 141
Hpy188III TCNNGA 1 cut(s) 59
HpyAV CCTTC 1 cut(s) 250
HpyCH4IV ACGT 2 cut(s) 289, 418
HpyCH4V TGCA 3 cut(s) 20, 271, 283
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 268
HpyF3I CTNAG 1 cut(s) 104
HpySE526I ACGT 2 cut(s) 289, 418
Hsp92II CATG 2 cut(s) 216, 238
Kzo9I GATC 1 cut(s) 55
LmnI GCTCC 2 cut(s) 409, 433
LpnPI CCDG 5 cut(s) 12, 61, 67, 94, 135
LweI GCATC 2 cut(s) 195, 280
MaeI CTAG 1 cut(s) 59
MaeII ACGT 2 cut(s) 289, 418
MalI GATC 1 cut(s) 57
MbiI CCGCTC 1 cut(s) 404
MboI GATC 1 cut(s) 55
MboII GAAGA 4 cut(s) 74, 92, 197, 200
MhlI GDGCHC 1 cut(s) 264
MluCI AATT 1 cut(s) 389
MmeI TCCRAC 2 cut(s) 48, 388
MnlI CCTC 5 cut(s) 102, 291, 365, 391, 424
Mph1103I ATGCAT 2 cut(s) 273, 285
MseI TTAA 2 cut(s) 119, 278
MslI CAYNNNNRTG 2 cut(s) 170, 288
MspCI CTTAAG 1 cut(s) 118
MspI CCGG 1 cut(s) 48
MspR9I CCNGG 2 cut(s) 49, 82
Mva1269I GAATGC 1 cut(s) 283
MvaI CCWGG 1 cut(s) 82
MwoI GCNNNNNNNGC 2 cut(s) 114, 268
NciI CCSGG 1 cut(s) 49
NdeII GATC 1 cut(s) 55
NlaIII CATG 2 cut(s) 216, 238
NlaIV GGNNCC 1 cut(s) 79
NsiI ATGCAT 2 cut(s) 273, 285
PctI GAATGC 1 cut(s) 283
PfeI GAWTC 2 cut(s) 136, 340
PfoI TCCNGGA 1 cut(s) 47
PmaCI CACGTG 1 cut(s) 290
PmlI CACGTG 1 cut(s) 290
Ppu21I YACGTR 1 cut(s) 290
Psp1406I AACGTT 1 cut(s) 418
Psp6I CCWGG 1 cut(s) 80
PspCI CACGTG 1 cut(s) 290
PspGI CCWGG 1 cut(s) 80
PspN4I GGNNCC 1 cut(s) 79
RseI CAYNNNNRTG 2 cut(s) 170, 288
SaqAI TTAA 2 cut(s) 119, 278
Sau3AI GATC 1 cut(s) 55
ScrFI CCNGG 2 cut(s) 49, 82
SduI GDGCHC 1 cut(s) 264
SetI ASST 8 cut(s) 16, 119, 125, 154, 261, 292, 330, 421
SfaNI GCATC 2 cut(s) 195, 280
SmiMI CAYNNNNRTG 2 cut(s) 170, 288
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
Sse9I AATT 1 cut(s) 389
SsiI CCGC 3 cut(s) 176, 208, 402
SspMI CTAG 1 cut(s) 59
StyD4I CCNGG 2 cut(s) 47, 80
TaiI ACGT 2 cut(s) 292, 421
TasI AATT 1 cut(s) 389
TfiI GAWTC 2 cut(s) 136, 340
Tru1I TTAA 2 cut(s) 119, 278
Tru9I TTAA 2 cut(s) 119, 278
TspDTI ATGAA 3 cut(s) 209, 251, 269
Vha464I CTTAAG 1 cut(s) 118
XbaI TCTAGA 1 cut(s) 58
XspI CTAG 1 cut(s) 59
Zsp2I ATGCAT 2 cut(s) 273, 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.