Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008342

Physical Location & Seq

Genomic Coordinates Reverse (-)

24743077 .. 24745926

Gene Structure 2850 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018043

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGTCGATTGAAGCTCTGGCAATGGCAGGTGCAGACTACAATGAATGTGGTATTGATCTTCGAGGGTGGGAGAGCGGCGAAGATCCACCGCCGCCATATATGTTGTCTGATGATGATCGTGATCAGCAAAGTAATGATACTGATCATCACTTCTTCGAATTCAGAGAAAAGAGTAGTACTACTGCCGCGGAAAGAGATTATCTTTATTACATGAAGATTAAGATGGACTCAAAACCCAATAGTTATTGGTCGCTACGAAATCCAGCTCATTATCACAGAATTGAACTTGCAGCGCTTACTTTCAAAGAGTCAACAAAATACCAAAACTGCAGCAACAATATTATCATGTCTGTCTCATTAGAAGCTTTGACTATGGCTGGTAAAGATTGCTTTTCCGTTGCTATAGATCTTGAAGAATGGGAGCGTAGGGACTTGGAGTTATCTCCACCACCACATTTACTAGCGGAAGATGAAGAAGAACAAGAAAAAGGAAAAGAGGAAGCAGATCATGGAAAGAAATTAAGACGAAGCACAGAAACAGGAGAGCAACTTCTGGTTATTAGTAAGAAAATGTGGGTTAATGTCACCAACATAGAAGCTAGCCATTGCAACCTAGCTGGAACGCTTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

211

Amino Acids

24.06

Weight (kDa)

4.77

Isoelectric Point (pI)

63.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22320
prunus_persica	Prupe.6G188500_v2.0.a1 Prupe.6G188600_v2.0.a1
rosa_laevigata	RLG00000018040 RLG00000018041 RLG00000018042 RLG00000018043
rosa_roxburghii	Rroxscaffold_2G00129640 Rroxscaffold_2G00129650 Rroxscaffold_2G00129670 Rroxscaffold_2G00129680
rosa_rugosa	Rorug02G0185000 Rorug02G0185100 Rorug02G0185200
rosa_samantha	Rh2AG239500 Rh2AG239600 Rh2BG253200 Rh2BG253400 Rh2BG253600 Rh2CG243400 Rh2CG243600 Rh2CG243700 Rh2DG247500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	17
Acc36I	ACCTGC	1 cut(s)	17
AccBSI	CCGCTC	1 cut(s)	75
AccII	CGCG	1 cut(s)	188
AciI	CCGC	6 cut(s)	75, 89, 92, 186, 188, 464
AclWI	GGATC	1 cut(s)	77
AcsI	RAATTY	1 cut(s)	158
AfaI	GTAC	1 cut(s)	178
AfeI	AGCGCT	1 cut(s)	294
AgsI	TTSAA	4 cut(s)	11, 284, 304, 413
AluBI	AGCT	5 cut(s)	14, 266, 365, 599, 617
AluI	AGCT	5 cut(s)	14, 266, 365, 599, 617
Alw26I	GTCTC	1 cut(s)	358
AlwI	GGATC	1 cut(s)	77
Aor51HI	AGCGCT	1 cut(s)	294
ApeKI	GCWGC	2 cut(s)	290, 330
ApoI	RAATTY	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	295
AsuHPI	GGTGA	1 cut(s)	577
AsuII	TTCGAA	1 cut(s)	156
AsuNHI	GCTAGC	1 cut(s)	599
BbvI	GCAGC	2 cut(s)	302, 342
BccI	CCATC	1 cut(s)	217
BclI	TGATCA	2 cut(s)	121, 142
BcoDI	GTCTC	1 cut(s)	358
BfaI	CTAG	4 cut(s)	461, 600, 614, 631
BfmI	CTRYAG	2 cut(s)	328, 402
BfoI	RGCGCY	1 cut(s)	296
BfuAI	ACCTGC	1 cut(s)	17
BglII	AGATCT	1 cut(s)	406
BisI	GCNGC	5 cut(s)	76, 92, 186, 291, 331
BlsI	GCNGC	5 cut(s)	77, 93, 187, 292, 332
BmcAI	AGTACT	1 cut(s)	178
BmtI	GCTAGC	1 cut(s)	603
Bpu14I	TTCGAA	1 cut(s)	156
BsaBI	GATNNNNATC	3 cut(s)	114, 120, 141
BsaJI	CCNNGG	1 cut(s)	186
Bse3DI	GCAATG	2 cut(s)	27, 604
Bse8I	GATNNNNATC	3 cut(s)	114, 120, 141
BseDI	CCNNGG	1 cut(s)	186
BseJI	GATNNNNATC	3 cut(s)	114, 120, 141
BseMI	GCAATG	2 cut(s)	27, 604
BseXI	GCAGC	2 cut(s)	302, 342
BsgI	GTGCAG	1 cut(s)	51
Bsh1236I	CGCG	1 cut(s)	188
BslFI	GGGAC	1 cut(s)	443
BsmAI	GTCTC	1 cut(s)	358
BsmFI	GGGAC	1 cut(s)	443
Bsp119I	TTCGAA	1 cut(s)	156
Bsp143I	GATC	7 cut(s)	55, 82, 115, 121, 142, 406, 505
BspACI	CCGC	6 cut(s)	75, 89, 92, 186, 188, 464
BspFNI	CGCG	1 cut(s)	188
BspMAI	CTGCAG	1 cut(s)	332
BspMI	ACCTGC	1 cut(s)	17
BspOI	GCTAGC	1 cut(s)	603
BspPI	GGATC	1 cut(s)	77
BspT104I	TTCGAA	1 cut(s)	156
BsrBI	CCGCTC	1 cut(s)	75
BsrDI	GCAATG	2 cut(s)	27, 604
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	7 cut(s)	55, 82, 115, 121, 142, 406, 505
BstBI	TTCGAA	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	601
BstDSI	CCRYGG	1 cut(s)	186
BstFNI	CGCG	1 cut(s)	188
BstH2I	RGCGCY	1 cut(s)	296
BstHHI	GCGC	1 cut(s)	295
BstKTI	GATC	7 cut(s)	58, 85, 118, 124, 145, 409, 508
BstMAI	GTCTC	1 cut(s)	358
BstMBI	GATC	7 cut(s)	55, 82, 115, 121, 142, 406, 505
BstSFI	CTRYAG	2 cut(s)	328, 402
BstUI	CGCG	1 cut(s)	188
BstV1I	GCAGC	2 cut(s)	302, 342
BstX2I	RGATCY	2 cut(s)	82, 406
BstYI	RGATCY	2 cut(s)	82, 406
BtgI	CCRYGG	1 cut(s)	186
BveI	ACCTGC	1 cut(s)	17
Cac8I	GCNNGC	1 cut(s)	601
CfoI	GCGC	1 cut(s)	295
Cfr42I	CCGCGG	1 cut(s)	189
Csp6I	GTAC	1 cut(s)	177
CspCI	CAANNNNNGTGG	2 cut(s)	28, 63
CviAII	CATG	3 cut(s)	211, 346, 509
CviJI	RGCY	7 cut(s)	14, 266, 365, 377, 599, 603, 617
CviKI_1	RGCY	7 cut(s)	14, 266, 365, 377, 599, 603, 617
CviQI	GTAC	1 cut(s)	177
DpnI	GATC	7 cut(s)	57, 84, 117, 123, 144, 408, 507
DpnII	GATC	7 cut(s)	55, 82, 115, 121, 142, 406, 505
Eco47III	AGCGCT	1 cut(s)	294
EcoRI	GAATTC	1 cut(s)	158
FaeI	CATG	3 cut(s)	214, 349, 512
FaiI	YATR	9 cut(s)	97, 99, 101, 212, 347, 374, 404, 510, 593
FaqI	GGGAC	1 cut(s)	443
FatI	CATG	3 cut(s)	210, 345, 508
FbaI	TGATCA	2 cut(s)	121, 142
Fnu4HI	GCNGC	5 cut(s)	76, 92, 186, 291, 331
Fsp4HI	GCNGC	5 cut(s)	76, 92, 186, 291, 331
FspBI	CTAG	4 cut(s)	461, 600, 614, 631
GlaI	GCGC	1 cut(s)	294
GluI	GCNGC	5 cut(s)	76, 92, 186, 291, 331
HaeII	RGCGCY	1 cut(s)	296
HhaI	GCGC	1 cut(s)	295
Hin1II	CATG	3 cut(s)	214, 349, 512
Hin6I	GCGC	1 cut(s)	293
HinP1I	GCGC	1 cut(s)	293
HincII	GTYRAC	1 cut(s)	312
HindII	GTYRAC	1 cut(s)	312
HindIII	AAGCTT	1 cut(s)	363
HinfI	GANTC	2 cut(s)	227, 308
HphI	GGTGA	1 cut(s)	577
Hpy166II	GTNNAC	1 cut(s)	312
Hpy188I	TCNGA	2 cut(s)	109, 164
Hpy188III	TCNNGA	2 cut(s)	119, 410
Hpy8I	GTNNAC	1 cut(s)	312
HpyCH4V	TGCA	4 cut(s)	32, 290, 330, 609
Hsp92II	CATG	3 cut(s)	214, 349, 512
HspAI	GCGC	1 cut(s)	293
Ksp22I	TGATCA	2 cut(s)	121, 142
KspI	CCGCGG	1 cut(s)	189
Kzo9I	GATC	7 cut(s)	55, 82, 115, 121, 142, 406, 505
LmnI	GCTCC	1 cut(s)	421
LpnPI	CCDG	7 cut(s)	2, 12, 276, 363, 525, 539, 603
Lsp1109I	GCAGC	2 cut(s)	302, 342
MaeI	CTAG	4 cut(s)	461, 600, 614, 631
MaeIII	GTNAC	1 cut(s)	583
MalI	GATC	7 cut(s)	57, 84, 117, 123, 144, 408, 507
MbiI	CCGCTC	1 cut(s)	75
MboI	GATC	7 cut(s)	55, 82, 115, 121, 142, 406, 505
MboII	GAAGA	8 cut(s)	50, 92, 145, 226, 425, 479, 485, 488
MflI	RGATCY	2 cut(s)	82, 406
MluCI	AATT	3 cut(s)	158, 279, 518
MlyI	GAGTC	2 cut(s)	221, 317
MnlI	CCTC	2 cut(s)	56, 490
MseI	TTAA	4 cut(s)	219, 521, 579, 627
MspA1I	CMGCKG	1 cut(s)	188
MvnI	CGCG	1 cut(s)	188
NdeII	GATC	7 cut(s)	55, 82, 115, 121, 142, 406, 505
NheI	GCTAGC	1 cut(s)	599
NlaIII	CATG	3 cut(s)	214, 349, 512
NmuCI	GTSAC	1 cut(s)	583
NspV	TTCGAA	1 cut(s)	156
PaqCI	CACCTGC	1 cut(s)	17
PkrI	GCNGC	5 cut(s)	77, 93, 187, 292, 332
PleI	GAGTC	2 cut(s)	221, 316
PpsI	GAGTC	2 cut(s)	221, 316
PstI	CTGCAG	1 cut(s)	332
PsuI	RGATCY	2 cut(s)	82, 406
RsaI	GTAC	1 cut(s)	178
RsaNI	GTAC	1 cut(s)	177
SacII	CCGCGG	1 cut(s)	189
SaqAI	TTAA	4 cut(s)	219, 521, 579, 627
SatI	GCNGC	5 cut(s)	76, 92, 186, 291, 331
Sau3AI	GATC	7 cut(s)	55, 82, 115, 121, 142, 406, 505
ScaI	AGTACT	1 cut(s)	178
SchI	GAGTC	2 cut(s)	221, 317
SetI	ASST	7 cut(s)	16, 31, 268, 367, 601, 615, 619
SfcI	CTRYAG	2 cut(s)	328, 402
Sfr303I	CCGCGG	1 cut(s)	189
SfuI	TTCGAA	1 cut(s)	156
SgrBI	CCGCGG	1 cut(s)	189
Sse9I	AATT	3 cut(s)	158, 279, 518
SsiI	CCGC	6 cut(s)	75, 89, 92, 186, 188, 464
SspI	AATATT	1 cut(s)	340
SspMI	CTAG	4 cut(s)	461, 600, 614, 631
TaqI	TCGA	3 cut(s)	5, 61, 156
TasI	AATT	3 cut(s)	158, 279, 518
TatI	WGTACW	1 cut(s)	176
TauI	GCSGC	3 cut(s)	78, 94, 188
Tru1I	TTAA	4 cut(s)	219, 521, 579, 627
Tru9I	TTAA	4 cut(s)	219, 521, 579, 627
TseFI	GTSAC	1 cut(s)	583
TseI	GCWGC	2 cut(s)	290, 330
Tsp45I	GTSAC	1 cut(s)	583
TspDTI	ATGAA	3 cut(s)	57, 227, 486
TspGWI	ACGGA	1 cut(s)	385
XapI	RAATTY	1 cut(s)	158
XspI	CTAG	4 cut(s)	461, 600, 614, 631
ZrmI	AGTACT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.