Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008342

Physical Location & Seq

Genomic Coordinates Reverse (-)

65682179 .. 65684838

Gene Structure 2660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00129680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTCGATTGAAGCTCTGGCAATGGCAGGTGCAGACTACAATGAATGTGGTATTGATCTTCGAGGGTGGGAGAGCGGCGAAGATCCACCGCCGCCATATATGTTGGCTGATGATGATCGTGATCAGCAAAGTAATGATACTGATCATCACTTCTTCGAATTCAGAGAAAAGAGTAGTACTACTGCCGCTGGAAGAGATTATCTTTATTACATGAAGATTAAGGTTCTGGGATGGCTAAAGCTGTGTTTCAATATGAGATTAATTGAACTTGCAGCGCTCACTTTCAAAGAGTCTACAAAATACCAAAACTGCAGCAAGAATATTATCATGTCTGTCTCATTAGAAGCTTTGGCTATGGCTGGTACAGATTGCTTTTCCGTTGCTATAGATCTTGAAGAATGGGAGCGTAGAGACTTGGAGTTGTCTCCACCACATTTACTAGCGGAAGATGAAGAAGAACAAGAAAAAGGAAAAGAGGAAGCAGATAGTGGAAAGAAATTAAGAAGAGGCCCAGAAAGAGGAGAGCAACTTCAGGTTATTAGTAAGAAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

184

Amino Acids

21.01

Weight (kDa)

4.68

Isoelectric Point (pI)

59.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0008342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22320
prunus_persica	Prupe.6G188500_v2.0.a1 Prupe.6G188600_v2.0.a1
rosa_laevigata	RLG00000018040 RLG00000018041 RLG00000018042 RLG00000018043
rosa_roxburghii	Rroxscaffold_2G00129640 Rroxscaffold_2G00129650 Rroxscaffold_2G00129670 Rroxscaffold_2G00129680
rosa_rugosa	Rorug02G0185000 Rorug02G0185100 Rorug02G0185200
rosa_samantha	Rh2AG239500 Rh2AG239600 Rh2BG253200 Rh2BG253400 Rh2BG253600 Rh2CG243400 Rh2CG243600 Rh2CG243700 Rh2DG247500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	17
Acc36I	ACCTGC	1 cut(s)	17
AccBSI	CCGCTC	1 cut(s)	75
AccI	GTMKAC	1 cut(s)	293
AciI	CCGC	5 cut(s)	75, 89, 92, 186, 443
AclWI	GGATC	1 cut(s)	77
AcsI	RAATTY	1 cut(s)	158
AcuI	CTGAAG	1 cut(s)	515
AfaI	GTAC	2 cut(s)	178, 364
AfeI	AGCGCT	1 cut(s)	276
AfiI	CCNNNNNNNGG	1 cut(s)	518
AgsI	TTSAA	5 cut(s)	11, 250, 266, 286, 395
AluBI	AGCT	3 cut(s)	14, 241, 347
AluI	AGCT	3 cut(s)	14, 241, 347
Alw26I	GTCTC	3 cut(s)	340, 405, 429
AlwI	GGATC	1 cut(s)	77
Aor51HI	AGCGCT	1 cut(s)	276
AoxI	GGCC	1 cut(s)	508
ApeKI	GCWGC	2 cut(s)	272, 312
ApoI	RAATTY	1 cut(s)	158
AseI	ATTAAT	1 cut(s)	260
AspLEI	GCGC	1 cut(s)	277
AspS9I	GGNCC	1 cut(s)	509
AsuII	TTCGAA	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	284, 324
BccI	CCATC	1 cut(s)	225
BclI	TGATCA	2 cut(s)	121, 142
BcoDI	GTCTC	3 cut(s)	340, 405, 429
BfaI	CTAG	1 cut(s)	440
BfmI	CTRYAG	2 cut(s)	310, 384
BfoI	RGCGCY	1 cut(s)	278
BfuAI	ACCTGC	1 cut(s)	17
BglII	AGATCT	1 cut(s)	388
BisI	GCNGC	5 cut(s)	76, 92, 186, 273, 313
BlsI	GCNGC	5 cut(s)	77, 93, 187, 274, 314
BmcAI	AGTACT	1 cut(s)	178
BmgT120I	GGNCC	1 cut(s)	509
Bpu14I	TTCGAA	1 cut(s)	156
BsaBI	GATNNNNATC	3 cut(s)	114, 120, 141
Bsc4I	CCNNNNNNNGG	1 cut(s)	518
Bse3DI	GCAATG	1 cut(s)	27
Bse8I	GATNNNNATC	3 cut(s)	114, 120, 141
BseGI	GGATG	1 cut(s)	236
BseJI	GATNNNNATC	3 cut(s)	114, 120, 141
BseLI	CCNNNNNNNGG	1 cut(s)	518
BseMI	GCAATG	1 cut(s)	27
BseRI	GAGGAG	1 cut(s)	534
BseXI	GCAGC	2 cut(s)	284, 324
BsgI	GTGCAG	1 cut(s)	51
BshFI	GGCC	1 cut(s)	510
BslI	CCNNNNNNNGG	1 cut(s)	518
BsmAI	GTCTC	3 cut(s)	340, 405, 429
BsnI	GGCC	1 cut(s)	510
Bsp119I	TTCGAA	1 cut(s)	156
Bsp143I	GATC	6 cut(s)	55, 82, 115, 121, 142, 388
BspACI	CCGC	5 cut(s)	75, 89, 92, 186, 443
BspANI	GGCC	1 cut(s)	510
BspMAI	CTGCAG	1 cut(s)	314
BspMI	ACCTGC	1 cut(s)	17
BspPI	GGATC	1 cut(s)	77
BspT104I	TTCGAA	1 cut(s)	156
BsrBI	CCGCTC	1 cut(s)	75
BsrDI	GCAATG	1 cut(s)	27
BssMI	GATC	6 cut(s)	55, 82, 115, 121, 142, 388
Bst6I	CTCTTC	2 cut(s)	187, 499
BstBI	TTCGAA	1 cut(s)	156
BstF5I	GGATG	1 cut(s)	236
BstH2I	RGCGCY	1 cut(s)	278
BstHHI	GCGC	1 cut(s)	277
BstKTI	GATC	6 cut(s)	58, 85, 118, 124, 145, 391
BstMAI	GTCTC	3 cut(s)	340, 405, 429
BstMBI	GATC	6 cut(s)	55, 82, 115, 121, 142, 388
BstSFI	CTRYAG	2 cut(s)	310, 384
BstV1I	GCAGC	2 cut(s)	284, 324
BstX2I	RGATCY	2 cut(s)	82, 388
BstYI	RGATCY	2 cut(s)	82, 388
BsuRI	GGCC	1 cut(s)	510
BtsCI	GGATG	1 cut(s)	236
BveI	ACCTGC	1 cut(s)	17
CfoI	GCGC	1 cut(s)	277
Cfr13I	GGNCC	1 cut(s)	509
Csp6I	GTAC	2 cut(s)	177, 363
CspCI	CAANNNNNGTGG	2 cut(s)	28, 63
CviAII	CATG	2 cut(s)	211, 328
CviJI	RGCY	8 cut(s)	14, 107, 235, 241, 347, 353, 359, 510
CviKI_1	RGCY	8 cut(s)	14, 107, 235, 241, 347, 353, 359, 510
CviQI	GTAC	2 cut(s)	177, 363
DpnI	GATC	6 cut(s)	57, 84, 117, 123, 144, 390
DpnII	GATC	6 cut(s)	55, 82, 115, 121, 142, 388
Eam1104I	CTCTTC	2 cut(s)	187, 499
EarI	CTCTTC	2 cut(s)	187, 499
Eco47III	AGCGCT	1 cut(s)	276
Eco57I	CTGAAG	1 cut(s)	515
EcoRI	GAATTC	1 cut(s)	158
FaeI	CATG	2 cut(s)	214, 331
FaiI	YATR	8 cut(s)	97, 99, 101, 212, 254, 329, 356, 386
FatI	CATG	2 cut(s)	210, 327
FbaI	TGATCA	2 cut(s)	121, 142
FblI	GTMKAC	1 cut(s)	293
Fnu4HI	GCNGC	5 cut(s)	76, 92, 186, 273, 313
FokI	GGATG	1 cut(s)	243
Fsp4HI	GCNGC	5 cut(s)	76, 92, 186, 273, 313
FspBI	CTAG	1 cut(s)	440
GlaI	GCGC	1 cut(s)	276
GluI	GCNGC	5 cut(s)	76, 92, 186, 273, 313
HaeII	RGCGCY	1 cut(s)	278
HaeIII	GGCC	1 cut(s)	510
HhaI	GCGC	1 cut(s)	277
Hin1II	CATG	2 cut(s)	214, 331
Hin6I	GCGC	1 cut(s)	275
HinP1I	GCGC	1 cut(s)	275
HindIII	AAGCTT	1 cut(s)	345
HinfI	GANTC	1 cut(s)	290
Hpy166II	GTNNAC	1 cut(s)	294
Hpy188I	TCNGA	1 cut(s)	164
Hpy188III	TCNNGA	2 cut(s)	119, 392
Hpy8I	GTNNAC	1 cut(s)	294
HpyCH4V	TGCA	3 cut(s)	32, 272, 312
Hsp92II	CATG	2 cut(s)	214, 331
HspAI	GCGC	1 cut(s)	275
Ksp22I	TGATCA	2 cut(s)	121, 142
Kzo9I	GATC	6 cut(s)	55, 82, 115, 121, 142, 388
LmnI	GCTCC	1 cut(s)	403
LpnPI	CCDG	7 cut(s)	2, 12, 174, 212, 345, 518, 525
Lsp1109I	GCAGC	2 cut(s)	284, 324
MaeI	CTAG	1 cut(s)	440
MalI	GATC	6 cut(s)	57, 84, 117, 123, 144, 390
MbiI	CCGCTC	1 cut(s)	75
MboI	GATC	6 cut(s)	55, 82, 115, 121, 142, 388
MflI	RGATCY	2 cut(s)	82, 388
MluCI	AATT	3 cut(s)	158, 261, 497
MlyI	GAGTC	1 cut(s)	299
MnlI	CCTC	4 cut(s)	56, 469, 500, 512
MseI	TTAA	3 cut(s)	219, 260, 500
MspA1I	CMGCKG	1 cut(s)	188
NdeII	GATC	6 cut(s)	55, 82, 115, 121, 142, 388
NlaIII	CATG	2 cut(s)	214, 331
NspV	TTCGAA	1 cut(s)	156
PaqCI	CACCTGC	1 cut(s)	17
PkrI	GCNGC	5 cut(s)	77, 93, 187, 274, 314
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
PshBI	ATTAAT	1 cut(s)	260
PspPI	GGNCC	1 cut(s)	509
PstI	CTGCAG	1 cut(s)	314
PsuI	RGATCY	2 cut(s)	82, 388
RsaI	GTAC	2 cut(s)	178, 364
RsaNI	GTAC	2 cut(s)	177, 363
SaqAI	TTAA	3 cut(s)	219, 260, 500
SatI	GCNGC	5 cut(s)	76, 92, 186, 273, 313
Sau3AI	GATC	6 cut(s)	55, 82, 115, 121, 142, 388
Sau96I	GGNCC	1 cut(s)	509
ScaI	AGTACT	1 cut(s)	178
SchI	GAGTC	1 cut(s)	299
SetI	ASST	6 cut(s)	16, 31, 225, 243, 349, 537
SfcI	CTRYAG	2 cut(s)	310, 384
SfuI	TTCGAA	1 cut(s)	156
Sse9I	AATT	3 cut(s)	158, 261, 497
SsiI	CCGC	5 cut(s)	75, 89, 92, 186, 443
SspI	AATATT	1 cut(s)	322
SspMI	CTAG	1 cut(s)	440
TaqI	TCGA	3 cut(s)	5, 61, 156
TasI	AATT	3 cut(s)	158, 261, 497
TatI	WGTACW	1 cut(s)	176
TauI	GCSGC	3 cut(s)	78, 94, 188
Tru1I	TTAA	3 cut(s)	219, 260, 500
Tru9I	TTAA	3 cut(s)	219, 260, 500
TseI	GCWGC	2 cut(s)	272, 312
TspDTI	ATGAA	3 cut(s)	57, 227, 465
TspGWI	ACGGA	1 cut(s)	367
VspI	ATTAAT	1 cut(s)	260
XapI	RAATTY	1 cut(s)	158
XmiI	GTMKAC	1 cut(s)	293
XspI	CTAG	1 cut(s)	440
ZrmI	AGTACT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.