Prupe.6G315500_v2.0.a1

3'-5' exonuclease

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
28120051 .. 28125875
5825 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G315500.4

Sequence Viewer

Length: 1695 bp
ATGGGATTGGAGGAAAGGGCCGACACACGTAACAAGCAAGGCAAATTTAATCAGACATCGACTATTTGCAAGCATGCTTTTTCTGACCTAACACATATTTCTCCATTGGTATTCATATACCTCTTGAAAGCGTGCTATTTCAATGGCACATATAAGGCAACTAAGAAGTTCCGAGTGCTTCAAGAACAGGTTCATCTAGTACTGCGCAATGATCCCCAACCTGGACCGGCTACTTTTGTTATTCAGTGCCTCTATGTCTTGCCTATATTTGATTTATACTCTGAAGGGTTCAGTCATTTGATTATATCTGCTCTTCGCCGTTTCCTGAAAATGGAAACTTCCACGTGGGACTCTTTAGAAGCAAAAGACCTGGCTTCCCAACTATTTATCGATGTTGTTGGGGGCTCTGTCAATCATGATGAGAGGATAGTTGAGAAGATTCTTGAAGCTTTTGATATTCATCTGCCAAACATTGATAAAGTAATGTGCCTGAGTGCAAAGAATGATTGCAGATTTGACACCGCAAAAAAGTTCGTTGAGCAATATATATTTGGACTGATAGAGTCTCAATCGTATATGACTGCAGTTACTCTTTTAGAGCACTTCTCTATCCGCCAATCTGGCCAATCTTTTCTCCTTAGTATGATAGAAAGCAAACAATTGAAAGCAGCAGATAAGTGGGCAACATTCATGGGAAAGCCAATGTTATGCGTTCTTGTCCAGGAGTACTTTGACAGGAACATGCTAAAAAATGCTTATGAGATTATACAGAAAAACAATCTCCAACATGAATTTCCCAATGTTTATCATAAGTACAAAGAAAGCTCACTAAAGAAATTAGCAGAAAAAGGATGCTGGGATGTCGCAGAAGCAAGGACAAACAGTAATAGACAACTTCTTGAATATCTGGTTTATTTAGCAATGGAGGCTGGTTACTCAGAAAAGGTTGATGAACTTTGCGATCGATACTCTCTTGAAGGTTTCTTGAATGCCAATGTACCCGAGGCAAGTCTTCTCCATAGTCGTTTTTTGCATCTCAGTGAGCTGGTTGTAGAAGGCGTTGTTTGGGTTGATGAAGTCAATGCCTTGCACAATGCAACCTCTTGTATTGAGGGATGCAAAGTTGTGGGTCTTGATTGTGAATGGAAACCGAACTATGTAAAAGGCAGCAAACCGAACAAGGTTTCTATCATGCAAATTGCTTCTGATAAAATGGTTTTCATATTTGACTTGATCAAGTTATTCAATGATATCCCTGACGTTCTGGATGATTCCTTAACTCGCATTTTGCAATCTCCTAGGATTCTAAAACTCGGCTATAATTTTCAATGTGATATGAAGCAGTTGGCTCATTCATATGAAGAGTTAGAGTGTTTCAAACACTATGAGATGCTACTGGACATCCAGAATGTATTCAAAGAACCTCGGGGTGGTCTGTCTGGGCTTGCAAAGAAAATACTGGGAGTTGGTTTGAACAAGACAAGGAGGAATAGCAATTGGGAGCAACGGCCTTTGACGCAGAATCAGCTGGAATACGCAGCTCTTGATGCCGCTGTTCTCATTCACATATTTCGCCATGTCCATGGTCATTCTCAGACTGCTGAAGGGGAGGGGCATAGAAAACTTGAGTGGAAATCCTGCATTGTTTCCCACATGGACAACATCAAGAAGTCCAAGAAGGGCAGTAAAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

565

Amino Acids

64.72

Weight (kDa)

7.57

Isoelectric Point (pI)

38.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 206
AciI CCGC 3 cut(s) 522, 613, 1551
AclWI GGATC 1 cut(s) 206
AcoI YGGCCR 1 cut(s) 622
AcsI RAATTY 2 cut(s) 44, 791
AcuI CTGAAG 2 cut(s) 303, 1623
AcvI CACGTG 1 cut(s) 345
AfaI GTAC 4 cut(s) 201, 728, 815, 999
AfiI CCNNNNNNNGG 3 cut(s) 221, 331, 1430
AflIII ACRYGT 1 cut(s) 26
AjnI CCWGG 3 cut(s) 220, 369, 720
AjuI GAANNNNNNNTTGG 2 cut(s) 777, 809
AluBI AGCT 5 cut(s) 449, 825, 1045, 1528, 1541
AluI AGCT 5 cut(s) 449, 825, 1045, 1528, 1541
Alw21I GWGCWC 1 cut(s) 603
Alw26I GTCTC 1 cut(s) 570
AlwI GGATC 1 cut(s) 206
Ama87I CYCGRG 2 cut(s) 1001, 1425
AoxI GGCC 3 cut(s) 18, 622, 1508
ApeKI GCWGC 3 cut(s) 668, 1167, 1538
ApoI RAATTY 2 cut(s) 44, 791
Asp700I GAANNNNTTC 2 cut(s) 189, 1412
AspA2I CCTAGG 1 cut(s) 1298
AspLEI GCGC 1 cut(s) 207
AspS9I GGNCC 2 cut(s) 18, 224
AvaI CYCGRG 2 cut(s) 1001, 1425
AvaII GGWCC 1 cut(s) 224
AvrII CCTAGG 1 cut(s) 1298
BalI TGGCCA 1 cut(s) 624
BanII GRGCYC 1 cut(s) 407
BbrPI CACGTG 1 cut(s) 345
BbsI GAAGAC 1 cut(s) 1004
Bbv12I GWGCWC 1 cut(s) 603
BbvI GCAGC 3 cut(s) 680, 1179, 1550
BceAI ACGGC 2 cut(s) 303, 1523
BciT130I CCWGG 3 cut(s) 222, 371, 722
BclI TGATCA 1 cut(s) 1233
BcoDI GTCTC 1 cut(s) 570
BfaI CTAG 2 cut(s) 197, 1299
BfmI CTRYAG 1 cut(s) 582
BglI GCCNNNNNGGC 1 cut(s) 621
BisI GCNGC 4 cut(s) 669, 1168, 1539, 1551
BlnI CCTAGG 1 cut(s) 1298
BlsI GCNGC 4 cut(s) 670, 1169, 1540, 1552
BmcAI AGTACT 2 cut(s) 201, 728
Bme1390I CCNGG 3 cut(s) 222, 371, 722
Bme18I GGWCC 1 cut(s) 224
BmeT110I CYCGRG 2 cut(s) 1001, 1425
BmgT120I GGNCC 2 cut(s) 18, 224
BmrFI CCNGG 3 cut(s) 222, 371, 722
BmrI ACTGGG 1 cut(s) 1469
BmsI GCATC 5 cut(s) 842, 1042, 1106, 1380, 1537
BmuI ACTGGG 1 cut(s) 1469
BpiI GAAGAC 1 cut(s) 1004
BplI GAGNNNNNCTC 2 cut(s) 590, 622
BpuEI CTTGAG 1 cut(s) 1646
Bsa29I ATCGAT 2 cut(s) 390, 964
BsaAI YACGTR 2 cut(s) 29, 345
BsaBI GATNNNNATC 1 cut(s) 459
BsaJI CCNNGG 4 cut(s) 1002, 1298, 1424, 1582
Bsc4I CCNNNNNNNGG 3 cut(s) 221, 331, 1430
Bse118I RCCGGY 1 cut(s) 226
Bse1I ACTGG 2 cut(s) 1401, 1464
Bse3DI GCAATG 2 cut(s) 214, 927
Bse8I GATNNNNATC 1 cut(s) 459
BseBI CCWGG 3 cut(s) 222, 371, 722
BseCI ATCGAT 2 cut(s) 390, 964
BseDI CCNNGG 4 cut(s) 1002, 1298, 1424, 1582
BseGI GGATG 5 cut(s) 857, 865, 1121, 1273, 1401
BseJI GATNNNNATC 1 cut(s) 459
BseLI CCNNNNNNNGG 3 cut(s) 221, 331, 1430
BseMI GCAATG 2 cut(s) 214, 927
BseMII CTCAG 4 cut(s) 482, 951, 1051, 1607
BseNI ACTGG 2 cut(s) 1401, 1464
BseXI GCAGC 3 cut(s) 680, 1179, 1550
BseYI CCCAGC 1 cut(s) 855
Bsh1285I CGRYCG 1 cut(s) 964
BshFI GGCC 3 cut(s) 20, 624, 1510
BshVI ATCGAT 2 cut(s) 390, 964
BsiEI CGRYCG 1 cut(s) 964
BsiHKAI GWGCWC 1 cut(s) 603
BsiHKCI CYCGRG 2 cut(s) 1001, 1425
BsiSI CCGG 1 cut(s) 227
BslFI GGGAC 1 cut(s) 362
BslI CCNNNNNNNGG 3 cut(s) 221, 331, 1430
BsmAI GTCTC 1 cut(s) 570
BsmFI GGGAC 1 cut(s) 362
BsmI GAATGC 1 cut(s) 994
BsnI GGCC 3 cut(s) 20, 624, 1510
BsoBI CYCGRG 2 cut(s) 1001, 1425
Bsp1286I GDGCHC 2 cut(s) 407, 603
Bsp143I GATC 3 cut(s) 211, 961, 1233
Bsp19I CCATGG 1 cut(s) 1582
BspACI CCGC 3 cut(s) 522, 613, 1551
BspANI GGCC 3 cut(s) 20, 624, 1510
BspCNI CTCAG 4 cut(s) 483, 950, 1050, 1606
BspDI ATCGAT 2 cut(s) 390, 964
BspHI TCATGA 1 cut(s) 415
BspMAI CTGCAG 1 cut(s) 586
BspPI GGATC 1 cut(s) 206
BspQI GCTCTTC 1 cut(s) 318
BsrDI GCAATG 2 cut(s) 214, 927
BsrFI RCCGGY 1 cut(s) 226
BsrI ACTGG 2 cut(s) 1401, 1464
BssAI RCCGGY 1 cut(s) 226
BssECI CCNNGG 4 cut(s) 1002, 1298, 1424, 1582
BssMI GATC 3 cut(s) 211, 961, 1233
BssT1I CCWWGG 2 cut(s) 1298, 1582
Bst2UI CCWGG 3 cut(s) 222, 371, 722
Bst4CI ACNGT 1 cut(s) 884
Bst6I CTCTTC 2 cut(s) 318, 1356
BstBAI YACGTR 2 cut(s) 29, 345
BstC8I GCNNGC 4 cut(s) 71, 75, 133, 1446
BstDEI CTNAG 6 cut(s) 162, 491, 638, 937, 1037, 1593
BstDSI CCRYGG 1 cut(s) 1582
BstF5I GGATG 5 cut(s) 857, 865, 1121, 1273, 1401
BstHHI GCGC 1 cut(s) 207
BstKTI GATC 3 cut(s) 214, 964, 1236
BstMAI GTCTC 1 cut(s) 570
BstMBI GATC 3 cut(s) 211, 961, 1233
BstMCI CGRYCG 1 cut(s) 964
BstMWI GCNNNNNNNGC 5 cut(s) 621, 926, 1516, 1525, 1547
BstNI CCWGG 3 cut(s) 222, 371, 722
BstNSI RCATGY 2 cut(s) 77, 745
BstSCI CCNGG 3 cut(s) 220, 369, 720
BstSFI CTRYAG 1 cut(s) 582
BstV1I GCAGC 3 cut(s) 680, 1179, 1550
BstV2I GAAGAC 1 cut(s) 1004
BstXI CCANNNNNNTGG 1 cut(s) 1583
Bsu15I ATCGAT 2 cut(s) 390, 964
BsuRI GGCC 3 cut(s) 20, 624, 1510
BsuTUI ATCGAT 2 cut(s) 390, 964
BtgI CCRYGG 1 cut(s) 1582
BtsCI GGATG 5 cut(s) 857, 865, 1121, 1273, 1401
BtsIMutI CAGTG 2 cut(s) 251, 1045
Cac8I GCNNGC 4 cut(s) 71, 75, 133, 1446
CciI TCATGA 1 cut(s) 415
CfoI GCGC 1 cut(s) 207
Cfr10I RCCGGY 1 cut(s) 226
Cfr13I GGNCC 2 cut(s) 18, 224
ClaI ATCGAT 2 cut(s) 390, 964
CseI GACGC 1 cut(s) 1525
Csp6I GTAC 4 cut(s) 200, 727, 814, 998
CviAII CATG 9 cut(s) 74, 416, 691, 742, 788, 1192, 1577, 1583, 1654
CviQI GTAC 4 cut(s) 200, 727, 814, 998
DdeI CTNAG 6 cut(s) 162, 491, 638, 937, 1037, 1593
DpnI GATC 3 cut(s) 213, 963, 1235
DpnII GATC 3 cut(s) 211, 961, 1233
EaeI YGGCCR 1 cut(s) 622
Eam1104I CTCTTC 2 cut(s) 318, 1356
EarI CTCTTC 2 cut(s) 318, 1356
EciI GGCGGA 1 cut(s) 602
Eco130I CCWWGG 2 cut(s) 1298, 1582
Eco24I GRGCYC 1 cut(s) 407
Eco32I GATATC 1 cut(s) 1252
Eco47I GGWCC 1 cut(s) 224
Eco57I CTGAAG 2 cut(s) 303, 1623
Eco72I CACGTG 1 cut(s) 345
Eco88I CYCGRG 2 cut(s) 1001, 1425
EcoRII CCWGG 3 cut(s) 220, 369, 720
EcoRV GATATC 1 cut(s) 1252
EcoT14I CCWWGG 2 cut(s) 1298, 1582
EcoT38I GRGCYC 1 cut(s) 407
ErhI CCWWGG 2 cut(s) 1298, 1582
FaeI CATG 9 cut(s) 77, 419, 694, 745, 791, 1195, 1580, 1586, 1657
FaqI GGGAC 1 cut(s) 362
FatI CATG 9 cut(s) 73, 415, 690, 741, 787, 1191, 1576, 1582, 1653
FauNDI CATATG 1 cut(s) 1357
FbaI TGATCA 1 cut(s) 1233
Fnu4HI GCNGC 4 cut(s) 669, 1168, 1539, 1551
FokI GGATG 5 cut(s) 864, 872, 1128, 1280, 1388
FriOI GRGCYC 1 cut(s) 407
Fsp4HI GCNGC 4 cut(s) 669, 1168, 1539, 1551
FspBI CTAG 2 cut(s) 197, 1299
FspI TGCGCA 1 cut(s) 206
GlaI GCGC 1 cut(s) 206
GluI GCNGC 4 cut(s) 669, 1168, 1539, 1551
GsaI CCCAGC 1 cut(s) 859
HaeIII GGCC 3 cut(s) 20, 624, 1510
HapII CCGG 1 cut(s) 227
HgaI GACGC 1 cut(s) 1525
HhaI GCGC 1 cut(s) 207
Hin1II CATG 9 cut(s) 77, 419, 694, 745, 791, 1195, 1580, 1586, 1657
Hin6I GCGC 1 cut(s) 205
HinP1I GCGC 1 cut(s) 205
HindIII AAGCTT 1 cut(s) 447
HinfI GANTC 6 cut(s) 350, 439, 563, 1271, 1303, 1522
HpaII CCGG 1 cut(s) 227
Hpy188I TCNGA 7 cut(s) 54, 85, 173, 283, 940, 1207, 1596
HpyAV CCTTC 5 cut(s) 278, 971, 1049, 1598, 1672
HpyCH4III ACNGT 1 cut(s) 884
HpyCH4IV ACGT 3 cut(s) 28, 344, 1260
HpyF10VI GCNNNNNNNGC 5 cut(s) 621, 926, 1516, 1525, 1547
HpyF3I CTNAG 6 cut(s) 162, 491, 638, 937, 1037, 1593
HpySE526I ACGT 3 cut(s) 28, 344, 1260
Hsp92II CATG 9 cut(s) 77, 419, 694, 745, 791, 1195, 1580, 1586, 1657
HspAI GCGC 1 cut(s) 205
Ksp22I TGATCA 1 cut(s) 1233
Kzo9I GATC 3 cut(s) 211, 961, 1233
LguI GCTCTTC 1 cut(s) 318
LmnI GCTCC 1 cut(s) 1501
Lsp1109I GCAGC 3 cut(s) 680, 1179, 1550
LweI GCATC 5 cut(s) 842, 1042, 1106, 1380, 1537
MaeI CTAG 2 cut(s) 197, 1299
MaeII ACGT 3 cut(s) 28, 344, 1260
MaeIII GTNAC 3 cut(s) 29, 586, 932
MalI GATC 3 cut(s) 213, 963, 1235
MboI GATC 3 cut(s) 211, 961, 1233
MboII GAAGA 4 cut(s) 305, 448, 1004, 1373
MfeI CAATTG 2 cut(s) 659, 1495
MhlI GDGCHC 2 cut(s) 407, 603
MlsI TGGCCA 1 cut(s) 624
MluCI AATT 7 cut(s) 44, 659, 791, 836, 1197, 1321, 1495
MluNI TGGCCA 1 cut(s) 624
MlyI GAGTC 2 cut(s) 344, 572
MmeI TCCRAC 1 cut(s) 808
Mox20I TGGCCA 1 cut(s) 624
MroXI GAANNNNTTC 2 cut(s) 189, 1412
MscI TGGCCA 1 cut(s) 624
MseI TTAA 2 cut(s) 48, 1277
MslI CAYNNNNRTG 3 cut(s) 1038, 1356, 1581
Msp20I TGGCCA 1 cut(s) 624
MspA1I CMGCKG 2 cut(s) 1528, 1553
MspI CCGG 1 cut(s) 227
MspR9I CCNGG 3 cut(s) 222, 371, 722
MunI CAATTG 2 cut(s) 659, 1495
Mva1269I GAATGC 1 cut(s) 994
MvaI CCWGG 3 cut(s) 222, 371, 722
MwoI GCNNNNNNNGC 5 cut(s) 621, 926, 1516, 1525, 1547
NcoI CCATGG 1 cut(s) 1582
NdeI CATATG 1 cut(s) 1357
NdeII GATC 3 cut(s) 211, 961, 1233
NlaIII CATG 9 cut(s) 77, 419, 694, 745, 791, 1195, 1580, 1586, 1657
NmeAIII GCCGAG 1 cut(s) 1293
NsbI TGCGCA 1 cut(s) 206
NspI RCATGY 2 cut(s) 77, 745
PaeI GCATGC 1 cut(s) 77
PagI TCATGA 1 cut(s) 415
PciSI GCTCTTC 1 cut(s) 318
PctI GAATGC 1 cut(s) 994
PdmI GAANNNNTTC 2 cut(s) 189, 1412
PfeI GAWTC 4 cut(s) 439, 1271, 1303, 1522
PfoI TCCNGGA 1 cut(s) 720
PkrI GCNGC 4 cut(s) 670, 1169, 1540, 1552
Ple19I CGATCG 1 cut(s) 964
PleI GAGTC 2 cut(s) 344, 571
PmaCI CACGTG 1 cut(s) 345
PmlI CACGTG 1 cut(s) 345
PpsI GAGTC 2 cut(s) 344, 571
Ppu21I YACGTR 2 cut(s) 29, 345
Psp6I CCWGG 3 cut(s) 220, 369, 720
PspCI CACGTG 1 cut(s) 345
PspFI CCCAGC 1 cut(s) 855
PspGI CCWGG 3 cut(s) 220, 369, 720
PspPI GGNCC 2 cut(s) 18, 224
PstI CTGCAG 1 cut(s) 586
PvuI CGATCG 1 cut(s) 964
PvuII CAGCTG 1 cut(s) 1528
RsaI GTAC 4 cut(s) 201, 728, 815, 999
RsaNI GTAC 4 cut(s) 200, 727, 814, 998
RseI CAYNNNNRTG 3 cut(s) 1038, 1356, 1581
SapI GCTCTTC 1 cut(s) 318
SaqAI TTAA 2 cut(s) 48, 1277
SatI GCNGC 4 cut(s) 669, 1168, 1539, 1551
Sau3AI GATC 3 cut(s) 211, 961, 1233
Sau96I GGNCC 2 cut(s) 18, 224
ScaI AGTACT 2 cut(s) 201, 728
SchI GAGTC 2 cut(s) 344, 572
ScrFI CCNGG 3 cut(s) 222, 371, 722
SduI GDGCHC 2 cut(s) 407, 603
SfaNI GCATC 5 cut(s) 842, 1042, 1106, 1380, 1537
SfcI CTRYAG 1 cut(s) 582
SinI GGWCC 1 cut(s) 224
SmiMI CAYNNNNRTG 3 cut(s) 1038, 1356, 1581
SmlI CTYRAG 1 cut(s) 1625
SmoI CTYRAG 1 cut(s) 1625
SphI GCATGC 1 cut(s) 77
Sse9I AATT 7 cut(s) 44, 659, 791, 836, 1197, 1321, 1495
SsiI CCGC 3 cut(s) 522, 613, 1551
SspMI CTAG 2 cut(s) 197, 1299
StyD4I CCNGG 3 cut(s) 220, 369, 720
StyI CCWWGG 2 cut(s) 1298, 1582
TaaI ACNGT 1 cut(s) 884
TaiI ACGT 3 cut(s) 31, 347, 1263
TaqI TCGA 3 cut(s) 59, 390, 964
TasI AATT 7 cut(s) 44, 659, 791, 836, 1197, 1321, 1495
TatI WGTACW 3 cut(s) 199, 726, 813
TauI GCSGC 1 cut(s) 1553
TfiI GAWTC 4 cut(s) 439, 1271, 1303, 1522
Tru1I TTAA 2 cut(s) 48, 1277
Tru9I TTAA 2 cut(s) 48, 1277
TscAI CASTG 2 cut(s) 251, 1045
TseI GCWGC 3 cut(s) 668, 1167, 1538
TspRI CASTG 2 cut(s) 251, 1045
VpaK11BI GGWCC 1 cut(s) 224
XapI RAATTY 2 cut(s) 44, 791
XceI RCATGY 2 cut(s) 77, 745
XmaJI CCTAGG 1 cut(s) 1298
XmnI GAANNNNTTC 2 cut(s) 189, 1412
XspI CTAG 2 cut(s) 197, 1299
ZrmI AGTACT 2 cut(s) 201, 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.