Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003918

Physical Location & Seq

Genomic Coordinates Reverse (-)

10708283 .. 10709608

Gene Structure 1326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001138

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGACGGCTGTTAGTCTATTAAAGCACTTCTCTATCCGCCAGTTTGGGAAATCTTTTCTTCTTAGTATGATACGAAGCAAGCAATTTGAGGCAGCAGAAAAATGGGCAACATTCATTGGAAAGCCAATGTTATGTGTTCTTGTCCATGAGTACATTGACAGGGATATGCTAAAGAATGCTAAGGAGGTTATGCAAAAAAACAATTTCGTACAGGATTTCCCTGATATTTATTGCAAGTATGAAGAGAGCTTGCTAAAGAAACTAGCAGATAAAGGATGCTGGGAGATTGCAGAAGCAAGGACAAACTGTAATAGGCATCTACTTGAATATCTGGTTTCTTTAGCAATGGGGGCTGGTTGCTTAGAGAAGGTTGATGAATTATGTGATCGATACTCGCTCAAAGTGCCTGAGCCAAGTCTTCATTGTGTGCATCAGGATGAGGTGCTTGTAGAAGATATCATTTGTGTTGATAAAGTTGATGCTTATAATGAAGCAACCTGTCAAATTGAGGAATCCAAAGTCGTAGGTCTTGATCATGAATGGAAAGTGTATTATGTAAAAGGAGGTACAAAAAATATGGTTTGTATCATGCCAGTTGCTTCGGGGAAGATGGAGGAAAAGGTACTGTCCCCTCATGAGAATGGTTGCACAATTACATTGCAAATGGTGTTGAAATTTGTTAAAAGACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol_A_exo1

Protein Analysis

231

Amino Acids

26.4

Weight (kDa)

6.25

Isoelectric Point (pI)

25.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56310 AT1G56310
fragaria_vesca	FvH4_5g34880 FvH4_5g34880 FvH4_6g07170 FvH4_6g07170
malus_domestica	MD04G1195700.v1.1 MD12G1208000.v1.1
prunus_persica	Prupe.6G315500_v2.0.a1 Prupe.6G315500_v2.0.a1 Prupe.6G315500_v2.0.a1 Prupe.6G315500_v2.0.a1 Prupe.6G315500_v2.0.a1
pyrus_communis	pycom04g17290 pycom12g19550
rosa_chinensis	RchiOBHm_Chr3g0456811 RchiOBHm_Chr7g0235801
rosa_laevigata	RLG00000001137 RLG00000001138 RLG00000025277
rosa_roxburghii	Rroxscaffold_3G00225620 Rroxscaffold_6G00422480
rosa_rugosa	Rorug03G0015800 Rorug03G0015900 Rorug07G0292900 Rorug07G0293000
rosa_samantha	Rh3AG076200 Rh3BG078100 Rh3CG077900 Rh7AG447800 Rh7CG468300 Rh7DG436800
rosa_wichuraiana	Rw3G006540 Rw7G037210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	486
AciI	CCGC	1 cut(s)	37
AcsI	RAATTY	1 cut(s)	674
AfaI	GTAC	4 cut(s)	152, 210, 568, 624
AgsI	TTSAA	2 cut(s)	326, 673
AluBI	AGCT	1 cut(s)	249
AluI	AGCT	1 cut(s)	249
ApeKI	GCWGC	1 cut(s)	92
ApoI	RAATTY	1 cut(s)	674
BbsI	GAAGAC	1 cut(s)	410
BbvI	GCAGC	1 cut(s)	104
BccI	CCATC	1 cut(s)	604
BceAI	ACGGC	1 cut(s)	21
BclI	TGATCA	1 cut(s)	532
BfaI	CTAG	1 cut(s)	263
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
BmsI	GCATC	4 cut(s)	266, 325, 439, 469
BpiI	GAAGAC	1 cut(s)	410
Bpu10I	CCTNAGC	2 cut(s)	180, 408
Bsa29I	ATCGAT	1 cut(s)	388
Bse1I	ACTGG	2 cut(s)	40, 593
Bse3DI	GCAATG	2 cut(s)	351, 656
BseCI	ATCGAT	1 cut(s)	388
BseGI	GGATG	2 cut(s)	281, 442
BseMI	GCAATG	2 cut(s)	351, 656
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	2 cut(s)	40, 593
BseXI	GCAGC	1 cut(s)	104
BseYI	CCCAGC	1 cut(s)	279
BshVI	ATCGAT	1 cut(s)	388
BslFI	GGGAC	1 cut(s)	613
BsmFI	GGGAC	1 cut(s)	613
BsmI	GAATGC	1 cut(s)	181
Bsp143I	GATC	2 cut(s)	385, 532
BspACI	CCGC	1 cut(s)	37
BspCNI	CTCAG	1 cut(s)	400
BspDI	ATCGAT	1 cut(s)	388
BspHI	TCATGA	2 cut(s)	535, 634
BsrDI	GCAATG	2 cut(s)	351, 656
BsrI	ACTGG	2 cut(s)	40, 593
BssMI	GATC	2 cut(s)	385, 532
Bst4CI	ACNGT	2 cut(s)	308, 627
Bst6I	CTCTTC	1 cut(s)	237
BstC8I	GCNNGC	2 cut(s)	80, 251
BstDEI	CTNAG	4 cut(s)	62, 180, 361, 408
BstF5I	GGATG	2 cut(s)	281, 442
BstKTI	GATC	2 cut(s)	388, 535
BstMBI	GATC	2 cut(s)	385, 532
BstMWI	GCNNNNNNNGC	2 cut(s)	350, 403
BstV1I	GCAGC	1 cut(s)	104
BstV2I	GAAGAC	1 cut(s)	410
Bsu15I	ATCGAT	1 cut(s)	388
BsuTUI	ATCGAT	1 cut(s)	388
BtsCI	GGATG	2 cut(s)	281, 442
Cac8I	GCNNGC	2 cut(s)	80, 251
CciI	TCATGA	2 cut(s)	535, 634
ClaI	ATCGAT	1 cut(s)	388
Csp6I	GTAC	4 cut(s)	151, 209, 567, 623
CviAII	CATG	4 cut(s)	146, 536, 589, 635
CviJI	RGCY	5 cut(s)	8, 124, 249, 353, 412
CviKI_1	RGCY	5 cut(s)	8, 124, 249, 353, 412
CviQI	GTAC	4 cut(s)	151, 209, 567, 623
DdeI	CTNAG	4 cut(s)	62, 180, 361, 408
DpnI	GATC	2 cut(s)	387, 534
DpnII	GATC	2 cut(s)	385, 532
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
EciI	GGCGGA	1 cut(s)	26
Eco32I	GATATC	1 cut(s)	457
EcoRV	GATATC	1 cut(s)	457
FaeI	CATG	4 cut(s)	149, 539, 592, 638
FaqI	GGGAC	1 cut(s)	613
FatI	CATG	4 cut(s)	145, 535, 588, 634
FbaI	TGATCA	1 cut(s)	532
Fnu4HI	GCNGC	1 cut(s)	93
FokI	GGATG	2 cut(s)	288, 449
Fsp4HI	GCNGC	1 cut(s)	93
FspBI	CTAG	1 cut(s)	263
GluI	GCNGC	1 cut(s)	93
GsaI	CCCAGC	1 cut(s)	283
Hin1II	CATG	4 cut(s)	149, 539, 592, 638
HinfI	GANTC	1 cut(s)	512
Hpy188III	TCNNGA	4 cut(s)	434, 530, 536, 635
HpyAV	CCTTC	1 cut(s)	361
HpyCH4III	ACNGT	2 cut(s)	308, 627
HpyCH4V	TGCA	6 cut(s)	193, 234, 290, 430, 648, 661
HpyF10VI	GCNNNNNNNGC	2 cut(s)	350, 403
HpyF3I	CTNAG	4 cut(s)	62, 180, 361, 408
Hsp92II	CATG	4 cut(s)	149, 539, 592, 638
Ksp22I	TGATCA	1 cut(s)	532
Kzo9I	GATC	2 cut(s)	385, 532
Lsp1109I	GCAGC	1 cut(s)	104
LweI	GCATC	4 cut(s)	266, 325, 439, 469
MaeI	CTAG	1 cut(s)	263
MalI	GATC	2 cut(s)	387, 534
MboI	GATC	2 cut(s)	385, 532
MboII	GAAGA	5 cut(s)	50, 254, 410, 464, 619
MluCI	AATT	6 cut(s)	83, 202, 377, 504, 651, 674
MnlI	CCTC	7 cut(s)	82, 178, 433, 502, 557, 607, 642
MseI	TTAA	3 cut(s)	20, 681, 691
MslI	CAYNNNNRTG	2 cut(s)	435, 639
Mva1269I	GAATGC	1 cut(s)	181
MwoI	GCNNNNNNNGC	2 cut(s)	350, 403
NdeII	GATC	2 cut(s)	385, 532
NlaIII	CATG	4 cut(s)	149, 539, 592, 638
PagI	TCATGA	2 cut(s)	535, 634
PctI	GAATGC	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	512
PkrI	GCNGC	1 cut(s)	94
PsiI	TTATAA	1 cut(s)	486
PspFI	CCCAGC	1 cut(s)	279
RsaI	GTAC	4 cut(s)	152, 210, 568, 624
RsaNI	GTAC	4 cut(s)	151, 209, 567, 623
RseI	CAYNNNNRTG	2 cut(s)	435, 639
SaqAI	TTAA	3 cut(s)	20, 681, 691
SatI	GCNGC	1 cut(s)	93
Sau3AI	GATC	2 cut(s)	385, 532
SetI	ASST	8 cut(s)	189, 251, 372, 444, 500, 529, 568, 624
SfaNI	GCATC	4 cut(s)	266, 325, 439, 469
SmiMI	CAYNNNNRTG	2 cut(s)	435, 639
Sse9I	AATT	6 cut(s)	83, 202, 377, 504, 651, 674
SsiI	CCGC	1 cut(s)	37
SspMI	CTAG	1 cut(s)	263
TaaI	ACNGT	2 cut(s)	308, 627
TaqI	TCGA	1 cut(s)	388
TasI	AATT	6 cut(s)	83, 202, 377, 504, 651, 674
TatI	WGTACW	1 cut(s)	150
TfiI	GAWTC	1 cut(s)	512
Tru1I	TTAA	3 cut(s)	20, 681, 691
Tru9I	TTAA	3 cut(s)	20, 681, 691
TseI	GCWGC	1 cut(s)	92
TspDTI	ATGAA	6 cut(s)	103, 255, 390, 410, 504, 552
XapI	RAATTY	1 cut(s)	674
XspI	CTAG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.