Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003853

Physical Location & Seq

Genomic Coordinates Forward (+)

30031224 .. 30032187

Gene Structure 964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G352600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGAAGCAGCAGCAGCAACAACATCAAATTCTGCAGATTCATTTCCCAATCTAAGAATCATAGTAGAAAGCAATCCCTCTGAGTCGCGCTTATCTGAGTTGGGCATTAACTCATGGCCCAAATGGGGGTGTCCACCGGGGAAGTACACGCTCAAGTTTGACGCAGCAGAGACATGTTATCTGGTAAAAGGCAAAGTGAAGGTATATCCTAAGAAAGCAGCAGCCTCCTCCTCCTCATCTTCATCTCATCATCATCATCATCAGGACGTTGTTGAGTTTGTAGAGTTTGGTGCAGGGGACCTTGTCACCATCCCCAAAGGCCTTAGTTGCACTTGGGACGTCTCCGTTGCCGTTGATAAGCACTACAAATTCGACTCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_3

Protein Analysis

128

Amino Acids

13.77

Weight (kDa)

6.57

Isoelectric Point (pI)

37.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04300
fragaria_vesca	FvH4_2g20230 FvH4_2g20230
malus_domestica	MD04G1232900.v1.1 MD05G1185700.v1.1 MD10G1173900.v1.1 MD12G1250500.v1.1
prunus_persica	Prupe.6G352600_v2.0.a1 Prupe.8G212600_v2.0.a1
pyrus_communis	pycom04g20630 pycom05g17040 pycom10g15000 pycom12g23050
rosa_chinensis	RchiOBHm_Chr3g0449191 RchiOBHm_Chr6g0285991
rosa_laevigata	RLG00000012591 RLG00000025846
rosa_multiflora	Rmu_co8302967.1_g000001 Rmu_sc0004874.1_g000008 Rmu_sc0006661.1_g000008
rosa_roxburghii	Rroxscaffold_6G00427240 Rroxscaffold_7G00182540
rosa_rugosa	Rorug02G0618700 Rorug06G0178100
rosa_samantha	Rh3AG017000 Rh3BG017100 Rh3CG016100 Rh3DG017400 Rh6AG290100 Rh6BG292100 Rh6CG293100 Rh6DG285200
rosa_wichuraiana	Rw3G001290 Rw6G025000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	342
AccII	CGCG	1 cut(s)	88
AcsI	RAATTY	2 cut(s)	28, 368
AcyI	GRCGYC	1 cut(s)	339
AfaI	GTAC	1 cut(s)	146
AfiI	CCNNNNNNNGG	2 cut(s)	125, 126
AflIII	ACRYGT	1 cut(s)	173
Alw26I	GTCTC	2 cut(s)	164, 346
AoxI	GGCC	2 cut(s)	116, 319
ApeKI	GCWGC	6 cut(s)	8, 11, 14, 164, 218, 221
ApoI	RAATTY	2 cut(s)	28, 368
AspLEI	GCGC	1 cut(s)	90
AspS9I	GGNCC	2 cut(s)	117, 298
AsuC2I	CCSGG	1 cut(s)	138
AsuHPI	GGTGA	1 cut(s)	298
AvaII	GGWCC	1 cut(s)	298
BbvI	GCAGC	6 cut(s)	20, 23, 26, 176, 230, 233
BccI	CCATC	1 cut(s)	317
BceAI	ACGGC	1 cut(s)	335
BcnI	CCSGG	1 cut(s)	138
BcoDI	GTCTC	2 cut(s)	164, 346
BfmI	CTRYAG	1 cut(s)	33
BisI	GCNGC	6 cut(s)	9, 12, 15, 165, 219, 222
BlsI	GCNGC	6 cut(s)	10, 13, 16, 166, 220, 223
Bme1390I	CCNGG	1 cut(s)	138
Bme18I	GGWCC	1 cut(s)	298
BmgT120I	GGNCC	2 cut(s)	117, 298
BmiI	GGNNCC	1 cut(s)	299
BmrFI	CCNGG	1 cut(s)	138
BpuEI	CTTGAG	1 cut(s)	137
BpuMI	CCSGG	1 cut(s)	138
BsaHI	GRCGYC	1 cut(s)	339
BsaJI	CCNNGG	1 cut(s)	137
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 126
BseDI	CCNNGG	1 cut(s)	137
BseGI	GGATG	1 cut(s)	309
BseLI	CCNNNNNNNGG	2 cut(s)	125, 126
BseMII	CTCAG	2 cut(s)	72, 87
BseRI	GAGGAG	3 cut(s)	217, 220, 223
BseXI	GCAGC	6 cut(s)	20, 23, 26, 176, 230, 233
BsgI	GTGCAG	1 cut(s)	312
Bsh1236I	CGCG	1 cut(s)	88
BshFI	GGCC	2 cut(s)	118, 321
BsiSI	CCGG	1 cut(s)	137
BslFI	GGGAC	2 cut(s)	311, 350
BslI	CCNNNNNNNGG	2 cut(s)	125, 126
BsmAI	GTCTC	2 cut(s)	164, 346
BsmBI	CGTCTC	1 cut(s)	346
BsmFI	GGGAC	2 cut(s)	311, 350
BsnI	GGCC	2 cut(s)	118, 321
BspANI	GGCC	2 cut(s)	118, 321
BspCNI	CTCAG	2 cut(s)	73, 88
BspFNI	CGCG	1 cut(s)	88
BspHI	TCATGA	1 cut(s)	380
BspLI	GGNNCC	1 cut(s)	299
BspMAI	CTGCAG	1 cut(s)	37
BssECI	CCNNGG	1 cut(s)	137
BssNI	GRCGYC	1 cut(s)	339
BstACI	GRCGYC	1 cut(s)	339
BstDEI	CTNAG	5 cut(s)	53, 81, 96, 210, 323
BstF5I	GGATG	1 cut(s)	309
BstFNI	CGCG	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	90
BstMAI	GTCTC	2 cut(s)	164, 346
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 327
BstNSI	RCATGY	1 cut(s)	177
BstSCI	CCNGG	1 cut(s)	136
BstSFI	CTRYAG	1 cut(s)	33
BstUI	CGCG	1 cut(s)	88
BstV1I	GCAGC	6 cut(s)	20, 23, 26, 176, 230, 233
BsuRI	GGCC	2 cut(s)	118, 321
BtsCI	GGATG	1 cut(s)	309
CciI	TCATGA	1 cut(s)	380
CfoI	GCGC	1 cut(s)	90
Cfr13I	GGNCC	2 cut(s)	117, 298
CseI	GACGC	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	3 cut(s)	114, 174, 381
CviJI	RGCY	3 cut(s)	118, 224, 321
CviKI_1	RGCY	3 cut(s)	118, 224, 321
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	5 cut(s)	53, 81, 96, 210, 323
Eco147I	AGGCCT	1 cut(s)	321
Eco47I	GGWCC	1 cut(s)	298
EcoO109I	RGGNCCY	1 cut(s)	298
Esp3I	CGTCTC	1 cut(s)	346
FaeI	CATG	3 cut(s)	117, 177, 384
FaiI	YATR	5 cut(s)	62, 115, 175, 205, 382
FaqI	GGGAC	2 cut(s)	311, 350
FatI	CATG	3 cut(s)	113, 173, 380
Fnu4HI	GCNGC	6 cut(s)	9, 12, 15, 165, 219, 222
FokI	GGATG	1 cut(s)	296
Fsp4HI	GCNGC	6 cut(s)	9, 12, 15, 165, 219, 222
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	6 cut(s)	9, 12, 15, 165, 219, 222
HaeIII	GGCC	2 cut(s)	118, 321
HapII	CCGG	1 cut(s)	137
HgaI	GACGC	1 cut(s)	170
HhaI	GCGC	1 cut(s)	90
Hin1I	GRCGYC	1 cut(s)	339
Hin1II	CATG	3 cut(s)	117, 177, 384
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HinfI	GANTC	4 cut(s)	38, 57, 83, 374
HpaII	CCGG	1 cut(s)	137
HphI	GGTGA	1 cut(s)	298
Hpy166II	GTNNAC	2 cut(s)	134, 147
Hpy188I	TCNGA	2 cut(s)	82, 97
Hpy188III	TCNNGA	2 cut(s)	263, 381
Hpy8I	GTNNAC	2 cut(s)	134, 147
HpyAV	CCTTC	1 cut(s)	193
HpyCH4IV	ACGT	2 cut(s)	267, 339
HpyCH4V	TGCA	3 cut(s)	35, 293, 330
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 327
HpyF3I	CTNAG	5 cut(s)	53, 81, 96, 210, 323
HpySE526I	ACGT	2 cut(s)	267, 339
Hsp92I	GRCGYC	1 cut(s)	339
Hsp92II	CATG	3 cut(s)	117, 177, 384
HspAI	GCGC	1 cut(s)	88
LpnPI	CCDG	4 cut(s)	150, 167, 248, 279
Lsp1109I	GCAGC	6 cut(s)	20, 23, 26, 176, 230, 233
MaeII	ACGT	2 cut(s)	267, 339
MaeIII	GTNAC	1 cut(s)	304
MboII	GAAGA	2 cut(s)	231, 369
MluCI	AATT	2 cut(s)	28, 368
MlyI	GAGTC	2 cut(s)	92, 368
MnlI	CCTC	5 cut(s)	88, 235, 238, 241, 244
MseI	TTAA	1 cut(s)	108
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	1 cut(s)	138
MvnI	CGCG	1 cut(s)	88
MwoI	GCNNNNNNNGC	2 cut(s)	14, 327
NciI	CCSGG	1 cut(s)	138
NlaIII	CATG	3 cut(s)	117, 177, 384
NlaIV	GGNNCC	1 cut(s)	299
NmuCI	GTSAC	1 cut(s)	304
NspI	RCATGY	1 cut(s)	177
PagI	TCATGA	1 cut(s)	380
PceI	AGGCCT	1 cut(s)	321
PciI	ACATGT	1 cut(s)	173
PfeI	GAWTC	2 cut(s)	38, 57
PflFI	GACNNNGTC	1 cut(s)	302
PkrI	GCNGC	6 cut(s)	10, 13, 16, 166, 220, 223
PleI	GAGTC	2 cut(s)	91, 368
PpsI	GAGTC	2 cut(s)	91, 368
PpuMI	RGGWCCY	1 cut(s)	298
PscI	ACATGT	1 cut(s)	173
Psp5II	RGGWCCY	1 cut(s)	298
PspN4I	GGNNCC	1 cut(s)	299
PspPI	GGNCC	2 cut(s)	117, 298
PspPPI	RGGWCCY	1 cut(s)	298
PstI	CTGCAG	1 cut(s)	37
PsyI	GACNNNGTC	1 cut(s)	302
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	6 cut(s)	9, 12, 15, 165, 219, 222
Sau96I	GGNCC	2 cut(s)	117, 298
SchI	GAGTC	2 cut(s)	92, 368
ScrFI	CCNGG	1 cut(s)	138
SetI	ASST	4 cut(s)	204, 270, 303, 342
SfcI	CTRYAG	1 cut(s)	33
SinI	GGWCC	1 cut(s)	298
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	2 cut(s)	28, 368
SseBI	AGGCCT	1 cut(s)	321
StuI	AGGCCT	1 cut(s)	321
StyD4I	CCNGG	1 cut(s)	136
TaiI	ACGT	2 cut(s)	270, 342
TaqI	TCGA	1 cut(s)	372
TasI	AATT	2 cut(s)	28, 368
TatI	WGTACW	1 cut(s)	144
TfiI	GAWTC	2 cut(s)	38, 57
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	6 cut(s)	8, 11, 14, 164, 218, 221
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	3 cut(s)	30, 231, 369
TspGWI	ACGGA	1 cut(s)	334
Tth111I	GACNNNGTC	1 cut(s)	302
VpaK11BI	GGWCC	1 cut(s)	298
XapI	RAATTY	2 cut(s)	28, 368
XceI	RCATGY	1 cut(s)	177
ZraI	GACGTC	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.