Rorug02G0618700
ERF Family

superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003853
Physical Location & Seq
Reverse (-)
73614095 .. 73614426
332 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0618700.1

Sequence Viewer

Length: 306 bp
ATGTCCCACAAATCTGCAATTCAACTAAGTATACCAGATATCATCAACAAACATGGTCGCCCCGTGACTCTTTCTGAGCTCACATCTGCACTACCAATCCACCCAACCAAATCCCACAGCGTCTACCGCCTCATGCGAATATTGGTACACTCTGGCTTCTTTGCTAAGGAAAAGCTGAGCAAGACTGATGAGGAAGCTCCTTCTGAAGGATCACCCCTTGAGCCTAACACCCTTCTTAACCGCCATACTCGACCCTGTTTTGACCAAACCATGGCATCACTTAAGCACTTGGTTCCAAAACGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_3

Protein Analysis

101

Amino Acids

11.35

Weight (kDa)

9.73

Isoelectric Point (pI)

45.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 4 - 61 7.3e-12 O-methyltransferase dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 271
AccI GTMKAC 2 cut(s) 31, 123
AciI CCGC 2 cut(s) 127, 241
AclWI GGATC 1 cut(s) 217
AcuI CTGAAG 1 cut(s) 225
AfaI GTAC 1 cut(s) 147
AfiI CCNNNNNNNGG 2 cut(s) 206, 271
AflII CTTAAG 1 cut(s) 281
AgsI TTSAA 1 cut(s) 23
AluBI AGCT 3 cut(s) 79, 175, 197
AluI AGCT 3 cut(s) 79, 175, 197
Alw21I GWGCWC 1 cut(s) 81
AlwI GGATC 1 cut(s) 217
AsuHPI GGTGA 1 cut(s) 204
BanII GRGCYC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 81
BfrI CTTAAG 1 cut(s) 281
BlpI GCTNAGC 1 cut(s) 176
BmiI GGNNCC 1 cut(s) 294
BmsI GCATC 1 cut(s) 284
Bpu10I CCTNAGC 1 cut(s) 165
Bpu1102I GCTNAGC 1 cut(s) 176
BpuEI CTTGAG 1 cut(s) 239
BsaJI CCNNGG 1 cut(s) 270
Bsc4I CCNNNNNNNGG 2 cut(s) 206, 271
BseDI CCNNGG 1 cut(s) 270
BseLI CCNNNNNNNGG 2 cut(s) 206, 271
BseMII CTCAG 2 cut(s) 66, 167
BsgI GTGCAG 1 cut(s) 72
BsiHKAI GWGCWC 1 cut(s) 81
BslI CCNNNNNNNGG 2 cut(s) 206, 271
Bsp1286I GDGCHC 1 cut(s) 81
Bsp143I GATC 1 cut(s) 209
Bsp1720I GCTNAGC 1 cut(s) 176
Bsp19I CCATGG 1 cut(s) 270
BspACI CCGC 2 cut(s) 127, 241
BspCNI CTCAG 2 cut(s) 67, 168
BspLI GGNNCC 1 cut(s) 294
BspPI GGATC 1 cut(s) 217
BspTI CTTAAG 1 cut(s) 281
BssECI CCNNGG 1 cut(s) 270
BssMI GATC 1 cut(s) 209
BssNAI GTATAC 1 cut(s) 32
BssT1I CCWWGG 1 cut(s) 270
Bst1107I GTATAC 1 cut(s) 32
BstAFI CTTAAG 1 cut(s) 281
BstDEI CTNAG 4 cut(s) 26, 75, 165, 176
BstDSI CCRYGG 1 cut(s) 270
BstENI CCTNNNNNAGG 1 cut(s) 204
BstKTI GATC 1 cut(s) 212
BstMBI GATC 1 cut(s) 209
BstMWI GCNNNNNNNGC 1 cut(s) 126
BstZ17I GTATAC 1 cut(s) 32
BtgI CCRYGG 1 cut(s) 270
CseI GACGC 1 cut(s) 109
Csp6I GTAC 1 cut(s) 146
CviAII CATG 3 cut(s) 53, 133, 271
CviJI RGCY 5 cut(s) 79, 156, 175, 197, 223
CviKI_1 RGCY 5 cut(s) 79, 156, 175, 197, 223
CviQI GTAC 1 cut(s) 146
DdeI CTNAG 4 cut(s) 26, 75, 165, 176
DpnI GATC 1 cut(s) 211
DpnII GATC 1 cut(s) 209
Ecl136II GAGCTC 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 270
Eco24I GRGCYC 1 cut(s) 81
Eco32I GATATC 1 cut(s) 40
Eco53kI GAGCTC 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 225
EcoICRI GAGCTC 1 cut(s) 79
EcoNI CCTNNNNNAGG 1 cut(s) 204
EcoRV GATATC 1 cut(s) 40
EcoT14I CCWWGG 1 cut(s) 270
EcoT38I GRGCYC 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 270
FaeI CATG 3 cut(s) 56, 136, 274
FaiI YATR 5 cut(s) 32, 54, 134, 246, 272
FatI CATG 3 cut(s) 52, 132, 270
FblI GTMKAC 2 cut(s) 31, 123
FriOI GRGCYC 1 cut(s) 81
HgaI GACGC 1 cut(s) 109
Hin1II CATG 3 cut(s) 56, 136, 274
HinfI GANTC 1 cut(s) 67
HphI GGTGA 1 cut(s) 204
Hpy166II GTNNAC 3 cut(s) 32, 124, 148
Hpy188I TCNGA 2 cut(s) 76, 205
Hpy8I GTNNAC 3 cut(s) 32, 124, 148
HpyAV CCTTC 3 cut(s) 200, 210, 242
HpyCH4V TGCA 2 cut(s) 17, 89
HpyF10VI GCNNNNNNNGC 1 cut(s) 126
HpyF3I CTNAG 4 cut(s) 26, 75, 165, 176
Hsp92II CATG 3 cut(s) 56, 136, 274
Kzo9I GATC 1 cut(s) 209
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 3 cut(s) 48, 138, 268
LweI GCATC 1 cut(s) 284
MaeIII GTNAC 1 cut(s) 64
MalI GATC 1 cut(s) 211
MboI GATC 1 cut(s) 209
MhlI GDGCHC 1 cut(s) 81
MluCI AATT 1 cut(s) 18
MlyI GAGTC 1 cut(s) 61
MnlI CCTC 2 cut(s) 140, 184
MseI TTAA 2 cut(s) 237, 282
MspCI CTTAAG 1 cut(s) 281
MwoI GCNNNNNNNGC 1 cut(s) 126
NcoI CCATGG 1 cut(s) 270
NdeII GATC 1 cut(s) 209
NlaIII CATG 3 cut(s) 56, 136, 274
NlaIV GGNNCC 1 cut(s) 294
NmuCI GTSAC 1 cut(s) 64
PflMI CCANNNNNTGG 1 cut(s) 271
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
Psp124BI GAGCTC 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 294
RsaI GTAC 1 cut(s) 147
RsaNI GTAC 1 cut(s) 146
SacI GAGCTC 1 cut(s) 81
SaqAI TTAA 2 cut(s) 237, 282
Sau3AI GATC 1 cut(s) 209
SchI GAGTC 1 cut(s) 61
SduI GDGCHC 1 cut(s) 81
SetI ASST 3 cut(s) 81, 177, 199
SfaNI GCATC 1 cut(s) 284
SmlI CTYRAG 2 cut(s) 218, 281
SmoI CTYRAG 2 cut(s) 218, 281
Sse9I AATT 1 cut(s) 18
SsiI CCGC 2 cut(s) 127, 241
SspI AATATT 1 cut(s) 141
SstI GAGCTC 1 cut(s) 81
StyI CCWWGG 1 cut(s) 270
TaqI TCGA 1 cut(s) 250
TasI AATT 1 cut(s) 18
Tru1I TTAA 2 cut(s) 237, 282
Tru9I TTAA 2 cut(s) 237, 282
TseFI GTSAC 1 cut(s) 64
Tsp45I GTSAC 1 cut(s) 64
Van91I CCANNNNNTGG 1 cut(s) 271
Vha464I CTTAAG 1 cut(s) 281
XagI CCTNNNNNAGG 1 cut(s) 204
XmiI GTMKAC 2 cut(s) 31, 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.