Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8302967.1

Orthogroup ID

OG0003853

Physical Location & Seq

Genomic Coordinates Reverse (-)

65 .. 534

Gene Structure 470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8302967.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atggcaacaacatcaaactctgcagtttcaacatttcctaatctaaacatcacagtggaaagcaatccctcggattcacgcttatctgaattggatataaactcatggccaaaatggggatgtgcaccagggaagtacacacttaagtttgaggcagcagagacatgttatctggtaagaggcagagtgaaggtgtatcctaaaggatgctcatcatcatcttcgtccgagtttgtagagtttggagaaggagaccttgtaaccattcccaaaggactcaggtgcatatgggatgtatcagttgccattgataaacactacaagtttgagtcttcttcatcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_3

Protein Analysis

114

Amino Acids

12.5

Weight (kDa)

5.78

Isoelectric Point (pI)

41.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04300
fragaria_vesca	FvH4_2g20230 FvH4_2g20230
malus_domestica	MD04G1232900.v1.1 MD05G1185700.v1.1 MD10G1173900.v1.1 MD12G1250500.v1.1
prunus_persica	Prupe.6G352600_v2.0.a1 Prupe.8G212600_v2.0.a1
pyrus_communis	pycom04g20630 pycom05g17040 pycom10g15000 pycom12g23050
rosa_chinensis	RchiOBHm_Chr3g0449191 RchiOBHm_Chr6g0285991
rosa_laevigata	RLG00000012591 RLG00000025846
rosa_multiflora	Rmu_co8302967.1_g000001 Rmu_sc0004874.1_g000008 Rmu_sc0006661.1_g000008
rosa_roxburghii	Rroxscaffold_6G00427240 Rroxscaffold_7G00182540
rosa_rugosa	Rorug02G0618700 Rorug06G0178100
rosa_samantha	Rh3AG017000 Rh3BG017100 Rh3CG016100 Rh3DG017400 Rh6AG290100 Rh6BG292100 Rh6CG293100 Rh6DG285200
rosa_wichuraiana	Rw3G001290 Rw6G025000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	107
AfaI	GTAC	1 cut(s)	137
AfiI	CCNNNNNNNGG	1 cut(s)	116
AflII	CTTAAG	1 cut(s)	143
AflIII	ACRYGT	1 cut(s)	164
AgsI	TTSAA	1 cut(s)	30
AjnI	CCWGG	1 cut(s)	127
Alw21I	GWGCWC	1 cut(s)	127
Alw26I	GTCTC	2 cut(s)	155, 246
Alw44I	GTGCAC	1 cut(s)	123
AoxI	GGCC	1 cut(s)	107
ApaLI	GTGCAC	1 cut(s)	123
ApeKI	GCWGC	1 cut(s)	155
BaeGI	GKGCMC	1 cut(s)	127
BalI	TGGCCA	1 cut(s)	109
BbsI	GAAGAC	1 cut(s)	324
Bbv12I	GWGCWC	1 cut(s)	127
BbvI	GCAGC	1 cut(s)	167
BciT130I	CCWGG	1 cut(s)	129
BciVI	GTATCC	1 cut(s)	207
BcoDI	GTCTC	2 cut(s)	155, 246
BfaI	CTAG	1 cut(s)	343
BfmI	CTRYAG	1 cut(s)	21
BfrI	CTTAAG	1 cut(s)	143
BfuI	GTATCC	1 cut(s)	207
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
Bme1390I	CCNGG	1 cut(s)	129
BmrFI	CCNGG	1 cut(s)	129
BmsI	GCATC	1 cut(s)	197
BpiI	GAAGAC	1 cut(s)	324
BsaBI	GATNNNNATC	1 cut(s)	211
BsaI	GGTCTC	1 cut(s)	246
BsaJI	CCNNGG	2 cut(s)	69, 128
BsaXI	ACNNNNNCTCC	2 cut(s)	243, 273
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse8I	GATNNNNATC	1 cut(s)	211
BseBI	CCWGG	1 cut(s)	129
BseDI	CCNNGG	2 cut(s)	69, 128
BseGI	GGATG	4 cut(s)	125, 212, 298, 338
BseJI	GATNNNNATC	1 cut(s)	211
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseMII	CTCAG	1 cut(s)	292
BseSI	GKGCMC	1 cut(s)	127
BseXI	GCAGC	1 cut(s)	167
BshFI	GGCC	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	127
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmAI	GTCTC	2 cut(s)	155, 246
BsnI	GGCC	1 cut(s)	109
Bso31I	GGTCTC	1 cut(s)	246
Bsp1286I	GDGCHC	1 cut(s)	127
BspANI	GGCC	1 cut(s)	109
BspCNI	CTCAG	1 cut(s)	291
BspMAI	CTGCAG	1 cut(s)	25
BspTI	CTTAAG	1 cut(s)	143
BspTNI	GGTCTC	1 cut(s)	246
BssECI	CCNNGG	2 cut(s)	69, 128
Bst2UI	CCWGG	1 cut(s)	129
Bst4CI	ACNGT	1 cut(s)	55
BstAFI	CTTAAG	1 cut(s)	143
BstDEI	CTNAG	1 cut(s)	278
BstF5I	GGATG	4 cut(s)	125, 212, 298, 338
BstMAI	GTCTC	2 cut(s)	155, 246
BstNI	CCWGG	1 cut(s)	129
BstNSI	RCATGY	1 cut(s)	168
BstSCI	CCNGG	1 cut(s)	127
BstSFI	CTRYAG	1 cut(s)	21
BstSLI	GKGCMC	1 cut(s)	127
BstV1I	GCAGC	1 cut(s)	167
BstV2I	GAAGAC	1 cut(s)	324
BsuI	GTATCC	1 cut(s)	207
BsuRI	GGCC	1 cut(s)	109
BtsCI	GGATG	4 cut(s)	125, 212, 298, 338
BtsIMutI	CAGTG	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	136
CviAII	CATG	2 cut(s)	105, 165
CviJI	RGCY	1 cut(s)	109
CviKI_1	RGCY	1 cut(s)	109
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	1 cut(s)	278
EaeI	YGGCCR	1 cut(s)	107
Eco31I	GGTCTC	1 cut(s)	246
EcoRII	CCWGG	1 cut(s)	127
FaeI	CATG	2 cut(s)	108, 168
FaiI	YATR	5 cut(s)	98, 106, 166, 287, 289
FalI	AAGNNNNNCTT	2 cut(s)	240, 272
FatI	CATG	2 cut(s)	104, 164
FauNDI	CATATG	1 cut(s)	287
Fnu4HI	GCNGC	1 cut(s)	156
FokI	GGATG	4 cut(s)	132, 219, 305, 325
Fsp4HI	GCNGC	1 cut(s)	156
FspBI	CTAG	1 cut(s)	343
GluI	GCNGC	1 cut(s)	156
HaeIII	GGCC	1 cut(s)	109
Hin1II	CATG	2 cut(s)	108, 168
HinfI	GANTC	3 cut(s)	74, 276, 329
Hpy166II	GTNNAC	2 cut(s)	125, 138
Hpy188I	TCNGA	3 cut(s)	73, 88, 229
Hpy8I	GTNNAC	2 cut(s)	125, 138
HpyAV	CCTTC	2 cut(s)	184, 242
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4V	TGCA	3 cut(s)	23, 125, 285
HpyF3I	CTNAG	1 cut(s)	278
Hsp92II	CATG	2 cut(s)	108, 168
LpnPI	CCDG	4 cut(s)	114, 141, 158, 265
Lsp1109I	GCAGC	1 cut(s)	167
LweI	GCATC	1 cut(s)	197
MaeI	CTAG	1 cut(s)	343
MaeIII	GTNAC	1 cut(s)	259
MboII	GAAGA	3 cut(s)	213, 324, 327
MhlI	GDGCHC	1 cut(s)	127
MlsI	TGGCCA	1 cut(s)	109
MluCI	AATT	1 cut(s)	89
MluNI	TGGCCA	1 cut(s)	109
MlyI	GAGTC	2 cut(s)	270, 338
MnlI	CCTC	3 cut(s)	79, 145, 173
Mox20I	TGGCCA	1 cut(s)	109
MscI	TGGCCA	1 cut(s)	109
MseI	TTAA	1 cut(s)	144
MslI	CAYNNNNRTG	1 cut(s)	53
Msp20I	TGGCCA	1 cut(s)	109
MspCI	CTTAAG	1 cut(s)	143
MspR9I	CCNGG	1 cut(s)	129
MvaI	CCWGG	1 cut(s)	129
NdeI	CATATG	1 cut(s)	287
NlaIII	CATG	2 cut(s)	108, 168
NspI	RCATGY	1 cut(s)	168
PciI	ACATGT	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	157
PleI	GAGTC	2 cut(s)	270, 337
PpsI	GAGTC	2 cut(s)	270, 337
PscI	ACATGT	1 cut(s)	164
Psp6I	CCWGG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	127
PstI	CTGCAG	1 cut(s)	25
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
RseI	CAYNNNNRTG	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	1 cut(s)	156
SchI	GAGTC	2 cut(s)	270, 338
ScrFI	CCNGG	1 cut(s)	129
SduI	GDGCHC	1 cut(s)	127
SetI	ASST	3 cut(s)	195, 258, 284
SfaNI	GCATC	1 cut(s)	197
SfcI	CTRYAG	1 cut(s)	21
SmiMI	CAYNNNNRTG	1 cut(s)	53
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	1 cut(s)	89
SspMI	CTAG	1 cut(s)	343
StyD4I	CCNGG	1 cut(s)	127
TaaI	ACNGT	1 cut(s)	55
TasI	AATT	1 cut(s)	89
TatI	WGTACW	1 cut(s)	135
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TscAI	CASTG	1 cut(s)	60
TseI	GCWGC	1 cut(s)	155
TspDTI	ATGAA	1 cut(s)	327
TspRI	CASTG	1 cut(s)	60
Vha464I	CTTAAG	1 cut(s)	143
VneI	GTGCAC	1 cut(s)	123
XceI	RCATGY	1 cut(s)	168
XspI	CTAG	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.