Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003853

Physical Location & Seq

Genomic Coordinates Reverse (-)

19603626 .. 19604891

Gene Structure 1266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G212600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGCTGCAGAACCCTGCTCATCAACCTCCTCCTCCTCCTCCTCAAGCCTCAGAATCACAGTTGAAAGAAACCCTTCTGAATCTCGCCTCTCCCAACTGGACATCAAGTGCTGGCCCAAATGGGGCTGCTCCCCAGGGAGGTACCAGCTGAAGTTTGATGCAGAGGAGACATGTTATTTGTTGAAGGGAAGAGTGAAGGCGTATCCAAAAGGGTCATCAGAATCTGTGGAGTTTGGGGCTGGAGACCTTGTCACCATCCCAAAGGGACTGAGTTGCACTTGGGATGTATCTGTGGCCGTTGATAAACACTACAAATTCGAATCATCATCATCTTCTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_3

Protein Analysis

114

Amino Acids

12.31

Weight (kDa)

7.59

Isoelectric Point (pI)

59.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04300
fragaria_vesca	FvH4_2g20230 FvH4_2g20230
malus_domestica	MD04G1232900.v1.1 MD05G1185700.v1.1 MD10G1173900.v1.1 MD12G1250500.v1.1
prunus_persica	Prupe.6G352600_v2.0.a1 Prupe.8G212600_v2.0.a1
pyrus_communis	pycom04g20630 pycom05g17040 pycom10g15000 pycom12g23050
rosa_chinensis	RchiOBHm_Chr3g0449191 RchiOBHm_Chr6g0285991
rosa_laevigata	RLG00000012591 RLG00000025846
rosa_multiflora	Rmu_co8302967.1_g000001 Rmu_sc0004874.1_g000008 Rmu_sc0006661.1_g000008
rosa_roxburghii	Rroxscaffold_6G00427240 Rroxscaffold_7G00182540
rosa_rugosa	Rorug02G0618700 Rorug06G0178100
rosa_samantha	Rh3AG017000 Rh3BG017100 Rh3CG016100 Rh3DG017400 Rh6AG290100 Rh6BG292100 Rh6CG293100 Rh6DG285200
rosa_wichuraiana	Rw3G001290 Rw6G025000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	141
AccB1I	GGYRCC	1 cut(s)	141
AcoI	YGGCCR	1 cut(s)	294
AcsI	RAATTY	1 cut(s)	314
AcuI	CTGAAG	1 cut(s)	170
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	2 cut(s)	122, 138
AflIII	ACRYGT	1 cut(s)	170
AgsI	TTSAA	2 cut(s)	65, 184
AjnI	CCWGG	1 cut(s)	133
AluBI	AGCT	1 cut(s)	148
AluI	AGCT	1 cut(s)	148
Alw26I	GTCTC	2 cut(s)	161, 237
AlwNI	CAGNNNCTG	1 cut(s)	224
AoxI	GGCC	2 cut(s)	113, 294
ApeKI	GCWGC	2 cut(s)	5, 126
ApoI	RAATTY	1 cut(s)	314
ArsI	GACNNNNNNTTYG	2 cut(s)	160, 192
Asp700I	GAANNNNTTC	1 cut(s)	73
Asp718I	GGTACC	1 cut(s)	141
AspS9I	GGNCC	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	244
AsuII	TTCGAA	1 cut(s)	318
BanI	GGYRCC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	113
BccI	CCATC	1 cut(s)	263
BceAI	ACGGC	1 cut(s)	281
BciT130I	CCWGG	1 cut(s)	135
BciVI	GTATCC	1 cut(s)	213
BcoDI	GTCTC	2 cut(s)	161, 237
BfmI	CTRYAG	1 cut(s)	6
BfuI	GTATCC	1 cut(s)	213
BisI	GCNGC	2 cut(s)	6, 127
BlsI	GCNGC	2 cut(s)	7, 128
Bme1390I	CCNGG	1 cut(s)	135
BmgT120I	GGNCC	1 cut(s)	114
BmiI	GGNNCC	1 cut(s)	143
BmrFI	CCNGG	1 cut(s)	135
BmsI	GCATC	1 cut(s)	148
BpmI	CTGGAG	1 cut(s)	261
Bpu14I	TTCGAA	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	28
BsaI	GGTCTC	1 cut(s)	237
BsaJI	CCNNGG	2 cut(s)	133, 134
BsaXI	ACNNNNNCTCC	2 cut(s)	234, 264
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 138
Bse1I	ACTGG	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	135
BseDI	CCNNGG	2 cut(s)	133, 134
BseGI	GGATG	2 cut(s)	255, 289
BseLI	CCNNNNNNNGG	2 cut(s)	122, 138
BseMII	CTCAG	2 cut(s)	64, 260
BseNI	ACTGG	1 cut(s)	102
BseRI	GAGGAG	6 cut(s)	19, 22, 25, 28, 31, 179
BseXI	GCAGC	1 cut(s)	113
BshFI	GGCC	2 cut(s)	115, 296
BshNI	GGYRCC	1 cut(s)	141
BslFI	GGGAC	1 cut(s)	279
BslI	CCNNNNNNNGG	2 cut(s)	122, 138
BsmAI	GTCTC	2 cut(s)	161, 237
BsmFI	GGGAC	1 cut(s)	279
BsnI	GGCC	2 cut(s)	115, 296
Bso31I	GGTCTC	1 cut(s)	237
Bsp119I	TTCGAA	1 cut(s)	318
BspANI	GGCC	2 cut(s)	115, 296
BspCNI	CTCAG	2 cut(s)	63, 261
BspLI	GGNNCC	1 cut(s)	143
BspMAI	CTGCAG	1 cut(s)	10
BspT104I	TTCGAA	1 cut(s)	318
BspT107I	GGYRCC	1 cut(s)	141
BspTNI	GGTCTC	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	102
BssECI	CCNNGG	2 cut(s)	133, 134
Bst2UI	CCWGG	1 cut(s)	135
Bst4CI	ACNGT	1 cut(s)	61
Bst6I	CTCTTC	1 cut(s)	184
BstBI	TTCGAA	1 cut(s)	318
BstC8I	GCNNGC	1 cut(s)	113
BstDEI	CTNAG	3 cut(s)	50, 269, 339
BstF5I	GGATG	2 cut(s)	255, 289
BstMAI	GTCTC	2 cut(s)	161, 237
BstNI	CCWGG	1 cut(s)	135
BstNSI	RCATGY	1 cut(s)	174
BstSCI	CCNGG	1 cut(s)	133
BstSFI	CTRYAG	1 cut(s)	6
BstV1I	GCAGC	1 cut(s)	113
BsuI	GTATCC	1 cut(s)	213
BsuRI	GGCC	2 cut(s)	115, 296
BtsCI	GGATG	2 cut(s)	255, 289
Cac8I	GCNNGC	1 cut(s)	113
CaiI	CAGNNNCTG	1 cut(s)	224
Cfr13I	GGNCC	1 cut(s)	114
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	1 cut(s)	171
CviJI	RGCY	7 cut(s)	5, 48, 115, 126, 148, 239, 296
CviKI_1	RGCY	7 cut(s)	5, 48, 115, 126, 148, 239, 296
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	3 cut(s)	50, 269, 339
EaeI	YGGCCR	1 cut(s)	294
Eam1104I	CTCTTC	1 cut(s)	184
EarI	CTCTTC	1 cut(s)	184
Eco31I	GGTCTC	1 cut(s)	237
Eco57I	CTGAAG	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	133
FaeI	CATG	1 cut(s)	174
FaiI	YATR	1 cut(s)	172
FalI	AAGNNNNNCTT	2 cut(s)	58, 90
FaqI	GGGAC	1 cut(s)	279
FatI	CATG	1 cut(s)	170
Fnu4HI	GCNGC	2 cut(s)	6, 127
FokI	GGATG	2 cut(s)	242, 296
Fsp4HI	GCNGC	2 cut(s)	6, 127
GluI	GCNGC	2 cut(s)	6, 127
GsuI	CTGGAG	1 cut(s)	261
HaeIII	GGCC	2 cut(s)	115, 296
Hin1II	CATG	1 cut(s)	174
HinfI	GANTC	4 cut(s)	54, 80, 221, 320
HphI	GGTGA	1 cut(s)	244
Hpy188I	TCNGA	3 cut(s)	53, 79, 220
HpyAV	CCTTC	3 cut(s)	84, 178, 190
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4V	TGCA	3 cut(s)	8, 161, 276
HpyF3I	CTNAG	3 cut(s)	50, 269, 339
Hsp92II	CATG	1 cut(s)	174
KpnI	GGTACC	1 cut(s)	145
LmnI	GCTCC	1 cut(s)	134
LpnPI	CCDG	7 cut(s)	28, 83, 97, 120, 147, 158, 225
Lsp1109I	GCAGC	1 cut(s)	113
LweI	GCATC	1 cut(s)	148
MaeIII	GTNAC	1 cut(s)	250
MboII	GAAGA	3 cut(s)	201, 324, 327
MluCI	AATT	1 cut(s)	314
MroXI	GAANNNNTTC	1 cut(s)	73
MspA1I	CMGCKG	1 cut(s)	148
MspR9I	CCNGG	1 cut(s)	135
MvaI	CCWGG	1 cut(s)	135
NlaIII	CATG	1 cut(s)	174
NlaIV	GGNNCC	1 cut(s)	143
NmuCI	GTSAC	1 cut(s)	250
NspI	RCATGY	1 cut(s)	174
NspV	TTCGAA	1 cut(s)	318
PasI	CCCWGGG	1 cut(s)	134
PciI	ACATGT	1 cut(s)	170
PdmI	GAANNNNTTC	1 cut(s)	73
PfeI	GAWTC	4 cut(s)	54, 80, 221, 320
PflFI	GACNNNGTC	1 cut(s)	248
PkrI	GCNGC	2 cut(s)	7, 128
PscI	ACATGT	1 cut(s)	170
Psp6I	CCWGG	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	133
PspN4I	GGNNCC	1 cut(s)	143
PspPI	GGNCC	1 cut(s)	114
PstI	CTGCAG	1 cut(s)	10
PstNI	CAGNNNCTG	1 cut(s)	224
PsyI	GACNNNGTC	1 cut(s)	248
PvuII	CAGCTG	1 cut(s)	148
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SatI	GCNGC	2 cut(s)	6, 127
Sau96I	GGNCC	1 cut(s)	114
ScrFI	CCNGG	1 cut(s)	135
SetI	ASST	4 cut(s)	29, 143, 150, 249
SfaNI	GCATC	1 cut(s)	148
SfcI	CTRYAG	1 cut(s)	6
SfuI	TTCGAA	1 cut(s)	318
SmlI	CTYRAG	1 cut(s)	43
SmoI	CTYRAG	1 cut(s)	43
Sse9I	AATT	1 cut(s)	314
StyD4I	CCNGG	1 cut(s)	133
TaaI	ACNGT	1 cut(s)	61
TaqI	TCGA	1 cut(s)	318
TasI	AATT	1 cut(s)	314
TfiI	GAWTC	4 cut(s)	54, 80, 221, 320
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	2 cut(s)	5, 126
Tsp45I	GTSAC	1 cut(s)	250
Tth111I	GACNNNGTC	1 cut(s)	248
XapI	RAATTY	1 cut(s)	314
XceI	RCATGY	1 cut(s)	174
XmnI	GAANNNNTTC	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.