RLG00000025846
ERF Family

superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0003853
Physical Location & Seq
Forward (+)
48667420 .. 48667881
462 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025846

Sequence Viewer

Length: 345 bp
ATGGCAACAACCTCAAACTCTGCAGTTTCAACATTTCCTAACCTGAGCATCACAGTGGAAAGCAATCCCTCGGATTCACGCTTATCTGAATTGGATATTAACTCATGGCCAAAATGGGGATGTGCACCAGGGAAGTACACACTTAAGTTTGAGGCAGCAGAGACATGTTATCTGGTAAGAGGCAGAGTGAAGGTGTATCCTAAAGGATGCTCATCATCATCTTCGTCCGAGTTTGTAGAGTTTGGAGCAGGAGACCTTGTAACCATTCCCAAAGGACTCAGTTGCATATGGGATGTATCAGTTGCCATTGATAAACACTACAAGTTTGAGTCCTCTTCATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_3

Protein Analysis

115

Amino Acids

12.34

Weight (kDa)

5.76

Isoelectric Point (pI)

38.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_3 PF05899 29 - 107 1.9e-24 EutQ-like cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 107
AfaI GTAC 1 cut(s) 137
AfiI CCNNNNNNNGG 1 cut(s) 116
AflII CTTAAG 1 cut(s) 143
AflIII ACRYGT 1 cut(s) 164
AgsI TTSAA 1 cut(s) 30
AjnI CCWGG 1 cut(s) 127
Alw21I GWGCWC 1 cut(s) 127
Alw26I GTCTC 2 cut(s) 155, 246
Alw44I GTGCAC 1 cut(s) 123
AoxI GGCC 1 cut(s) 107
ApaLI GTGCAC 1 cut(s) 123
ApeKI GCWGC 1 cut(s) 155
BaeGI GKGCMC 1 cut(s) 127
BalI TGGCCA 1 cut(s) 109
Bbv12I GWGCWC 1 cut(s) 127
BbvI GCAGC 1 cut(s) 167
BciT130I CCWGG 1 cut(s) 129
BciVI GTATCC 1 cut(s) 207
BcoDI GTCTC 2 cut(s) 155, 246
BfaI CTAG 1 cut(s) 343
BfmI CTRYAG 1 cut(s) 21
BfrI CTTAAG 1 cut(s) 143
BfuI GTATCC 1 cut(s) 207
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
Bme1390I CCNGG 1 cut(s) 129
BmrFI CCNGG 1 cut(s) 129
BmsI GCATC 2 cut(s) 57, 197
Bpu10I CCTNAGC 1 cut(s) 44
BsaBI GATNNNNATC 1 cut(s) 211
BsaI GGTCTC 1 cut(s) 246
BsaJI CCNNGG 2 cut(s) 69, 128
BsaXI ACNNNNNCTCC 2 cut(s) 243, 273
Bsc4I CCNNNNNNNGG 1 cut(s) 116
Bse8I GATNNNNATC 1 cut(s) 211
BseBI CCWGG 1 cut(s) 129
BseDI CCNNGG 2 cut(s) 69, 128
BseGI GGATG 4 cut(s) 125, 212, 298, 338
BseJI GATNNNNATC 1 cut(s) 211
BseLI CCNNNNNNNGG 1 cut(s) 116
BseMII CTCAG 2 cut(s) 35, 292
BseSI GKGCMC 1 cut(s) 127
BseXI GCAGC 1 cut(s) 167
BshFI GGCC 1 cut(s) 109
BsiHKAI GWGCWC 1 cut(s) 127
BslI CCNNNNNNNGG 1 cut(s) 116
BsmAI GTCTC 2 cut(s) 155, 246
BsnI GGCC 1 cut(s) 109
Bso31I GGTCTC 1 cut(s) 246
Bsp1286I GDGCHC 1 cut(s) 127
BspANI GGCC 1 cut(s) 109
BspCNI CTCAG 2 cut(s) 36, 291
BspMAI CTGCAG 1 cut(s) 25
BspTI CTTAAG 1 cut(s) 143
BspTNI GGTCTC 1 cut(s) 246
BssECI CCNNGG 2 cut(s) 69, 128
Bst2UI CCWGG 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 55
Bst6I CTCTTC 1 cut(s) 340
BstAFI CTTAAG 1 cut(s) 143
BstDEI CTNAG 2 cut(s) 44, 278
BstF5I GGATG 4 cut(s) 125, 212, 298, 338
BstMAI GTCTC 2 cut(s) 155, 246
BstNI CCWGG 1 cut(s) 129
BstNSI RCATGY 1 cut(s) 168
BstSCI CCNGG 1 cut(s) 127
BstSFI CTRYAG 1 cut(s) 21
BstSLI GKGCMC 1 cut(s) 127
BstV1I GCAGC 1 cut(s) 167
BsuI GTATCC 1 cut(s) 207
BsuRI GGCC 1 cut(s) 109
BtsCI GGATG 4 cut(s) 125, 212, 298, 338
BtsIMutI CAGTG 1 cut(s) 60
Csp6I GTAC 1 cut(s) 136
CviAII CATG 2 cut(s) 105, 165
CviJI RGCY 1 cut(s) 109
CviKI_1 RGCY 1 cut(s) 109
CviQI GTAC 1 cut(s) 136
DdeI CTNAG 2 cut(s) 44, 278
EaeI YGGCCR 1 cut(s) 107
Eam1104I CTCTTC 1 cut(s) 340
EarI CTCTTC 1 cut(s) 340
Eco31I GGTCTC 1 cut(s) 246
EcoRII CCWGG 1 cut(s) 127
FaeI CATG 2 cut(s) 108, 168
FaiI YATR 4 cut(s) 106, 166, 287, 289
FatI CATG 2 cut(s) 104, 164
FauNDI CATATG 1 cut(s) 287
Fnu4HI GCNGC 1 cut(s) 156
FokI GGATG 4 cut(s) 132, 219, 305, 325
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 1 cut(s) 343
GluI GCNGC 1 cut(s) 156
HaeIII GGCC 1 cut(s) 109
Hin1II CATG 2 cut(s) 108, 168
HinfI GANTC 3 cut(s) 74, 276, 329
Hpy166II GTNNAC 2 cut(s) 125, 138
Hpy188I TCNGA 3 cut(s) 73, 88, 229
Hpy8I GTNNAC 2 cut(s) 125, 138
HpyAV CCTTC 1 cut(s) 184
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4V TGCA 3 cut(s) 23, 125, 285
HpyF3I CTNAG 2 cut(s) 44, 278
Hsp92II CATG 2 cut(s) 108, 168
LmnI GCTCC 1 cut(s) 245
LpnPI CCDG 5 cut(s) 56, 114, 141, 158, 234
Lsp1109I GCAGC 1 cut(s) 167
LweI GCATC 2 cut(s) 57, 197
MaeI CTAG 1 cut(s) 343
MaeIII GTNAC 1 cut(s) 259
MboII GAAGA 2 cut(s) 213, 327
MhlI GDGCHC 1 cut(s) 127
MlsI TGGCCA 1 cut(s) 109
MluCI AATT 1 cut(s) 89
MluNI TGGCCA 1 cut(s) 109
MlyI GAGTC 2 cut(s) 270, 338
MnlI CCTC 5 cut(s) 22, 79, 145, 173, 343
Mox20I TGGCCA 1 cut(s) 109
MscI TGGCCA 1 cut(s) 109
MseI TTAA 2 cut(s) 99, 144
MslI CAYNNNNRTG 1 cut(s) 53
Msp20I TGGCCA 1 cut(s) 109
MspCI CTTAAG 1 cut(s) 143
MspR9I CCNGG 1 cut(s) 129
MvaI CCWGG 1 cut(s) 129
NdeI CATATG 1 cut(s) 287
NlaIII CATG 2 cut(s) 108, 168
NspI RCATGY 1 cut(s) 168
PciI ACATGT 1 cut(s) 164
PfeI GAWTC 1 cut(s) 74
PkrI GCNGC 1 cut(s) 157
PleI GAGTC 2 cut(s) 270, 337
PpsI GAGTC 2 cut(s) 270, 337
PscI ACATGT 1 cut(s) 164
Psp6I CCWGG 1 cut(s) 127
PspGI CCWGG 1 cut(s) 127
PstI CTGCAG 1 cut(s) 25
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
RseI CAYNNNNRTG 1 cut(s) 53
SaqAI TTAA 2 cut(s) 99, 144
SatI GCNGC 1 cut(s) 156
SchI GAGTC 2 cut(s) 270, 338
ScrFI CCNGG 1 cut(s) 129
SduI GDGCHC 1 cut(s) 127
SetI ASST 4 cut(s) 14, 45, 195, 258
SfaNI GCATC 2 cut(s) 57, 197
SfcI CTRYAG 1 cut(s) 21
SmiMI CAYNNNNRTG 1 cut(s) 53
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 1 cut(s) 89
SspMI CTAG 1 cut(s) 343
StyD4I CCNGG 1 cut(s) 127
TaaI ACNGT 1 cut(s) 55
TasI AATT 1 cut(s) 89
TatI WGTACW 1 cut(s) 135
TfiI GAWTC 1 cut(s) 74
Tru1I TTAA 2 cut(s) 99, 144
Tru9I TTAA 2 cut(s) 99, 144
TscAI CASTG 1 cut(s) 60
TseI GCWGC 1 cut(s) 155
TspDTI ATGAA 1 cut(s) 327
TspRI CASTG 1 cut(s) 60
Vha464I CTTAAG 1 cut(s) 143
VneI GTGCAC 1 cut(s) 123
XceI RCATGY 1 cut(s) 168
XspI CTAG 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.