DNA helicase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G57300 AT3G57300 AT3G57300 AT3G57300 |
| fragaria_vesca | FvH4_6g24570 FvH4_6g24570 FvH4_6g24570 FvH4_6g24570 FvH4_6g24570 FvH4_6g24570 FvH4_6g24570 |
| malus_domestica | MD03G1136600.v1.1 MD11G1158800.v1.1 |
| prunus_persica | Prupe.7G053300_v2.0.a1 Prupe.7G053300_v2.0.a1 |
| pyrus_communis | pycom03g09240 pycom11g12930 |
| rosa_chinensis | RchiOBHm_Chr3g0483871 |
| rosa_laevigata | RLG00000023256 |
| rosa_multiflora | Rmu_sc0005901.1_g000002 |
| rosa_roxburghii | Rroxscaffold_6G00398080 |
| rosa_rugosa | Rorug03G0208400 Rorug03G0208500 |
| rosa_samantha | Rh3AG257100 Rh3BG293500 Rh3CG291800 Rh3DG286900 |
| rosa_wichuraiana | Rw3G023240 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 524 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 521, 1789 |
| AccBSI | CCGCTC | 1 cut(s) | 3164 |
| AccI | GTMKAC | 5 cut(s) | 927, 2859, 3975, 4201, 4209 |
| AccII | CGCG | 1 cut(s) | 1329 |
| AciI | CCGC | 5 cut(s) | 2059, 2069, 2366, 3164, 4380 |
| AclI | AACGTT | 1 cut(s) | 2969 |
| AcoI | YGGCCR | 3 cut(s) | 408, 2109, 4066 |
| AcsI | RAATTY | 9 cut(s) | 190, 853, 1607, 2601, 2608, 2710, 2811, 2829, 4152 |
| AcuI | CTGAAG | 7 cut(s) | 761, 927, 1335, 1461, 1994, 3521, 3605 |
| AdeI | CACNNNGTG | 1 cut(s) | 521 |
| AfaI | GTAC | 9 cut(s) | 673, 1222, 2020, 2025, 2248, 2380, 2693, 3838, 4270 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 521, 871, 1789, 2000, 2732, 3007, 4075 |
| AflIII | ACRYGT | 1 cut(s) | 2131 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2855 |
| AhlI | ACTAGT | 1 cut(s) | 1601 |
| AjiI | CACGTC | 2 cut(s) | 2132, 2749 |
| AjnI | CCWGG | 5 cut(s) | 398, 484, 3235, 3464, 3915 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 659, 691 |
| Alw21I | GWGCWC | 7 cut(s) | 1496, 2394, 2496, 2754, 2825, 3343, 3943 |
| Alw44I | GTGCAC | 2 cut(s) | 2492, 2750 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1789, 3236, 3875 |
| Ama87I | CYCGRG | 1 cut(s) | 3710 |
| AoxI | GGCC | 9 cut(s) | 408, 725, 1777, 1860, 1907, 2109, 4066, 4355, 4448 |
| ApaLI | GTGCAC | 2 cut(s) | 2492, 2750 |
| ApoI | RAATTY | 9 cut(s) | 190, 853, 1607, 2601, 2608, 2710, 2811, 2829, 4152 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 811, 843, 4012, 4044 |
| AseI | ATTAAT | 1 cut(s) | 2958 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 300, 774, 2907, 3028 |
| AspLEI | GCGC | 1 cut(s) | 1329 |
| AspS9I | GGNCC | 5 cut(s) | 4, 725, 1907, 3233, 3461 |
| AsuC2I | CCSGG | 1 cut(s) | 737 |
| AvaI | CYCGRG | 1 cut(s) | 3710 |
| AvaII | GGWCC | 3 cut(s) | 4, 3233, 3461 |
| AxyI | CCTNAGG | 4 cut(s) | 1530, 1650, 4095, 4263 |
| BaeGI | GKGCMC | 2 cut(s) | 2496, 2754 |
| BalI | TGGCCA | 2 cut(s) | 410, 4068 |
| BamHI | GGATCC | 3 cut(s) | 686, 1751, 3758 |
| BanI | GGYRCC | 1 cut(s) | 524 |
| BanII | GRGCYC | 6 cut(s) | 756, 1496, 2284, 2825, 3343, 3943 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 4098, 4130 |
| BauI | CACGAG | 2 cut(s) | 3330, 4277 |
| BbsI | GAAGAC | 3 cut(s) | 1530, 2000, 2207 |
| Bbv12I | GWGCWC | 7 cut(s) | 1496, 2394, 2496, 2754, 2825, 3343, 3943 |
| BbvCI | CCTCAGC | 1 cut(s) | 1887 |
| BciT130I | CCWGG | 5 cut(s) | 400, 486, 3237, 3466, 3917 |
| BcnI | CCSGG | 1 cut(s) | 737 |
| BcuI | ACTAGT | 1 cut(s) | 1601 |
| BfmI | CTRYAG | 5 cut(s) | 2860, 3003, 3228, 3727, 3923 |
| BglII | AGATCT | 2 cut(s) | 1444, 1687 |
| BlpI | GCTNAGC | 2 cut(s) | 2210, 2839 |
| Bme1390I | CCNGG | 6 cut(s) | 400, 486, 737, 3237, 3466, 3917 |
| Bme18I | GGWCC | 3 cut(s) | 4, 3233, 3461 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2855 |
| BmeT110I | CYCGRG | 1 cut(s) | 3710 |
| BmgBI | CACGTC | 2 cut(s) | 2132, 2749 |
| BmgT120I | GGNCC | 5 cut(s) | 4, 725, 1907, 3233, 3461 |
| BmrFI | CCNGG | 6 cut(s) | 400, 486, 737, 3237, 3466, 3917 |
| BmrI | ACTGGG | 4 cut(s) | 757, 2008, 3341, 3441 |
| BmuI | ACTGGG | 4 cut(s) | 757, 2008, 3341, 3441 |
| BpiI | GAAGAC | 3 cut(s) | 1530, 2000, 2207 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2924, 2956 |
| BpmI | CTGGAG | 5 cut(s) | 1692, 1766, 2801, 4272, 4497 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1887, 2655 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 2210, 2839 |
| BpuEI | CTTGAG | 4 cut(s) | 77, 1554, 3670, 4505 |
| BpuMI | CCSGG | 1 cut(s) | 737 |
| Bsa29I | ATCGAT | 2 cut(s) | 280, 2914 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3906 |
| BsaI | GGTCTC | 1 cut(s) | 1150 |
| BsaJI | CCNNGG | 9 cut(s) | 21, 145, 485, 690, 1863, 3410, 3464, 3915, 4167 |
| BsaWI | WCCGGW | 4 cut(s) | 252, 1116, 1735, 2899 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 4495, 4525 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 521, 871, 1789, 2000, 2732, 3007, 4075 |
| Bse21I | CCTNAGG | 4 cut(s) | 1530, 1650, 4095, 4263 |
| Bse3DI | GCAATG | 2 cut(s) | 3358, 3936 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3906 |
| BseBI | CCWGG | 5 cut(s) | 400, 486, 3237, 3466, 3917 |
| BseCI | ATCGAT | 2 cut(s) | 280, 2914 |
| BseDI | CCNNGG | 9 cut(s) | 21, 145, 485, 690, 1863, 3410, 3464, 3915, 4167 |
| BseJI | GATNNNNATC | 1 cut(s) | 3906 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 521, 871, 1789, 2000, 2732, 3007, 4075 |
| BseMI | GCAATG | 2 cut(s) | 3358, 3936 |
| BseRI | GAGGAG | 5 cut(s) | 438, 1313, 1486, 1904, 2683 |
| BseSI | GKGCMC | 2 cut(s) | 2496, 2754 |
| BseYI | CCCAGC | 2 cut(s) | 756, 3589 |
| BsgI | GTGCAG | 2 cut(s) | 330, 4242 |
| Bsh1236I | CGCG | 1 cut(s) | 1329 |
| BshFI | GGCC | 9 cut(s) | 410, 727, 1779, 1862, 1909, 2111, 4068, 4357, 4450 |
| BshNI | GGYRCC | 1 cut(s) | 524 |
| BshVI | ATCGAT | 2 cut(s) | 280, 2914 |
| BsiHKAI | GWGCWC | 7 cut(s) | 1496, 2394, 2496, 2754, 2825, 3343, 3943 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3710 |
| BsiSI | CCGG | 5 cut(s) | 253, 736, 1117, 1736, 2900 |
| BsiWI | CGTACG | 1 cut(s) | 2018 |
| BslFI | GGGAC | 3 cut(s) | 1854, 2983, 3290 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 521, 871, 1789, 2000, 2732, 3007, 4075 |
| BsmFI | GGGAC | 3 cut(s) | 1854, 2983, 3290 |
| BsmI | GAATGC | 2 cut(s) | 2410, 3180 |
| BsnI | GGCC | 9 cut(s) | 410, 727, 1779, 1862, 1909, 2111, 4068, 4357, 4450 |
| Bso31I | GGTCTC | 1 cut(s) | 1150 |
| BsoBI | CYCGRG | 1 cut(s) | 3710 |
| Bsp1286I | GDGCHC | 9 cut(s) | 756, 1496, 2284, 2394, 2496, 2754, 2825, 3343, 3943 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 2210, 2839 |
| Bsp19I | CCATGG | 1 cut(s) | 1863 |
| BspACI | CCGC | 5 cut(s) | 2059, 2069, 2366, 3164, 4380 |
| BspANI | GGCC | 9 cut(s) | 410, 727, 1779, 1862, 1909, 2111, 4068, 4357, 4450 |
| BspDI | ATCGAT | 2 cut(s) | 280, 2914 |
| BspFNI | CGCG | 1 cut(s) | 1329 |
| BspMAI | CTGCAG | 1 cut(s) | 3007 |
| BspQI | GCTCTTC | 1 cut(s) | 3540 |
| BspT107I | GGYRCC | 1 cut(s) | 524 |
| BspTNI | GGTCTC | 1 cut(s) | 1150 |
| BsrBI | CCGCTC | 1 cut(s) | 3164 |
| BsrDI | GCAATG | 2 cut(s) | 3358, 3936 |
| BssECI | CCNNGG | 9 cut(s) | 21, 145, 485, 690, 1863, 3410, 3464, 3915, 4167 |
| BssNAI | GTATAC | 1 cut(s) | 4202 |
| BssSI | CACGAG | 2 cut(s) | 3330, 4277 |
| BssT1I | CCWWGG | 6 cut(s) | 21, 145, 690, 1863, 3410, 4167 |
| Bst1107I | GTATAC | 1 cut(s) | 4202 |
| Bst2BI | CACGAG | 2 cut(s) | 3330, 4277 |
| Bst2UI | CCWGG | 5 cut(s) | 400, 486, 3237, 3466, 3917 |
| Bst6I | CTCTTC | 9 cut(s) | 53, 1069, 1253, 1995, 2721, 3413, 3540, 3999, 4460 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 509, 3011, 4499 |
| BstC8I | GCNNGC | 1 cut(s) | 4491 |
| BstDSI | CCRYGG | 1 cut(s) | 1863 |
| BstFNI | CGCG | 1 cut(s) | 1329 |
| BstHHI | GCGC | 1 cut(s) | 1329 |
| BstNI | CCWGG | 5 cut(s) | 400, 486, 3237, 3466, 3917 |
| BstNSI | RCATGY | 2 cut(s) | 1084, 1246 |
| BstSCI | CCNGG | 6 cut(s) | 398, 484, 735, 3235, 3464, 3915 |
| BstSFI | CTRYAG | 5 cut(s) | 2860, 3003, 3228, 3727, 3923 |
| BstSLI | GKGCMC | 2 cut(s) | 2496, 2754 |
| BstUI | CGCG | 1 cut(s) | 1329 |
| BstV2I | GAAGAC | 3 cut(s) | 1530, 2000, 2207 |
| BstX2I | RGATCY | 7 cut(s) | 686, 1444, 1687, 1751, 3758, 3919, 4382 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 406, 3772 |
| BstYI | RGATCY | 7 cut(s) | 686, 1444, 1687, 1751, 3758, 3919, 4382 |
| BstZ17I | GTATAC | 1 cut(s) | 4202 |
| Bsu15I | ATCGAT | 2 cut(s) | 280, 2914 |
| Bsu36I | CCTNAGG | 4 cut(s) | 1530, 1650, 4095, 4263 |
| BsuRI | GGCC | 9 cut(s) | 410, 727, 1779, 1862, 1909, 2111, 4068, 4357, 4450 |
| BsuTUI | ATCGAT | 2 cut(s) | 280, 2914 |
| BtgI | CCRYGG | 1 cut(s) | 1863 |
| BtrI | CACGTC | 2 cut(s) | 2132, 2749 |
| BtsI | GCAGTG | 3 cut(s) | 2040, 2204, 2494 |
| Cac8I | GCNNGC | 1 cut(s) | 4491 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1789, 3236, 3875 |
| CfoI | GCGC | 1 cut(s) | 1329 |
| Cfr13I | GGNCC | 5 cut(s) | 4, 725, 1907, 3233, 3461 |
| ClaI | ATCGAT | 2 cut(s) | 280, 2914 |
| CseI | GACGC | 3 cut(s) | 1142, 2426, 4220 |
| CsiI | ACCWGGT | 1 cut(s) | 3235 |
| Csp6I | GTAC | 9 cut(s) | 672, 1221, 2019, 2024, 2247, 2379, 2692, 3837, 4269 |
| CviQI | GTAC | 9 cut(s) | 672, 1221, 2019, 2024, 2247, 2379, 2692, 3837, 4269 |
| DraI | TTTAAA | 5 cut(s) | 393, 1561, 1584, 1747, 1815 |
| DraIII | CACNNNGTG | 1 cut(s) | 521 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2855 |
| EaeI | YGGCCR | 3 cut(s) | 408, 2109, 4066 |
| Eam1104I | CTCTTC | 9 cut(s) | 53, 1069, 1253, 1995, 2721, 3413, 3540, 3999, 4460 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2855 |
| EarI | CTCTTC | 9 cut(s) | 53, 1069, 1253, 1995, 2721, 3413, 3540, 3999, 4460 |
| EciI | GGCGGA | 1 cut(s) | 4395 |
| Ecl136II | GAGCTC | 4 cut(s) | 1494, 2823, 3341, 3941 |
| Eco130I | CCWWGG | 6 cut(s) | 21, 145, 690, 1863, 3410, 4167 |
| Eco147I | AGGCCT | 1 cut(s) | 1779 |
| Eco24I | GRGCYC | 6 cut(s) | 756, 1496, 2284, 2825, 3343, 3943 |
| Eco31I | GGTCTC | 1 cut(s) | 1150 |
| Eco47I | GGWCC | 3 cut(s) | 4, 3233, 3461 |
| Eco53kI | GAGCTC | 4 cut(s) | 1494, 2823, 3341, 3941 |
| Eco57I | CTGAAG | 7 cut(s) | 761, 927, 1335, 1461, 1994, 3521, 3605 |
| Eco81I | CCTNAGG | 4 cut(s) | 1530, 1650, 4095, 4263 |
| Eco88I | CYCGRG | 1 cut(s) | 3710 |
| EcoICRI | GAGCTC | 4 cut(s) | 1494, 2823, 3341, 3941 |
| EcoO109I | RGGNCCY | 3 cut(s) | 725, 1907, 3233 |
| EcoRI | GAATTC | 1 cut(s) | 190 |
| EcoRII | CCWGG | 5 cut(s) | 398, 484, 3235, 3464, 3915 |
| EcoT14I | CCWWGG | 6 cut(s) | 21, 145, 690, 1863, 3410, 4167 |
| EcoT38I | GRGCYC | 6 cut(s) | 756, 1496, 2284, 2825, 3343, 3943 |
| ErhI | CCWWGG | 6 cut(s) | 21, 145, 690, 1863, 3410, 4167 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1740, 1772 |
| FaqI | GGGAC | 3 cut(s) | 1854, 2983, 3290 |
| FauI | CCCGC | 1 cut(s) | 2062 |
| FauNDI | CATATG | 1 cut(s) | 961 |
| FblI | GTMKAC | 5 cut(s) | 927, 2859, 3975, 4201, 4209 |
| FriOI | GRGCYC | 6 cut(s) | 756, 1496, 2284, 2825, 3343, 3943 |
| GlaI | GCGC | 1 cut(s) | 1328 |
| GsaI | CCCAGC | 2 cut(s) | 760, 3593 |
| GsuI | CTGGAG | 5 cut(s) | 1692, 1766, 2801, 4272, 4497 |
| HaeIII | GGCC | 9 cut(s) | 410, 727, 1779, 1862, 1909, 2111, 4068, 4357, 4450 |
| HapII | CCGG | 5 cut(s) | 253, 736, 1117, 1736, 2900 |
| HgaI | GACGC | 3 cut(s) | 1142, 2426, 4220 |
| HhaI | GCGC | 1 cut(s) | 1329 |
| Hin6I | GCGC | 1 cut(s) | 1327 |
| HinP1I | GCGC | 1 cut(s) | 1327 |
| HincII | GTYRAC | 1 cut(s) | 3543 |
| HindII | GTYRAC | 1 cut(s) | 3543 |
| HindIII | AAGCTT | 3 cut(s) | 1317, 2520, 3580 |
| HpaI | GTTAAC | 1 cut(s) | 3543 |
| HpaII | CCGG | 5 cut(s) | 253, 736, 1117, 1736, 2900 |
| Hpy99I | CGWCG | 2 cut(s) | 2133, 2442 |
| HpyCH4IV | ACGT | 4 cut(s) | 539, 2131, 2748, 2969 |
| HpySE526I | ACGT | 4 cut(s) | 539, 2131, 2748, 2969 |
| HspAI | GCGC | 1 cut(s) | 1327 |
| KspAI | GTTAAC | 1 cut(s) | 3543 |
| LguI | GCTCTTC | 1 cut(s) | 3540 |
| MabI | ACCWGGT | 1 cut(s) | 3235 |
| MaeII | ACGT | 4 cut(s) | 539, 2131, 2748, 2969 |
| MaeIII | GTNAC | 9 cut(s) | 224, 610, 710, 1403, 1714, 2485, 3166, 3199, 3967 |
| MbiI | CCGCTC | 1 cut(s) | 3164 |
| MfeI | CAATTG | 1 cut(s) | 1945 |
| MflI | RGATCY | 7 cut(s) | 686, 1444, 1687, 1751, 3758, 3919, 4382 |
| MhlI | GDGCHC | 9 cut(s) | 756, 1496, 2284, 2394, 2496, 2754, 2825, 3343, 3943 |
| MlsI | TGGCCA | 2 cut(s) | 410, 4068 |
| MluNI | TGGCCA | 2 cut(s) | 410, 4068 |
| MlyI | GAGTC | 4 cut(s) | 68, 3092, 3487, 4277 |
| MmeI | TCCRAC | 5 cut(s) | 1435, 3935, 4113, 4335, 4380 |
| Mox20I | TGGCCA | 2 cut(s) | 410, 4068 |
| MroXI | GAANNNNTTC | 4 cut(s) | 300, 774, 2907, 3028 |
| MscI | TGGCCA | 2 cut(s) | 410, 4068 |
| MslI | CAYNNNNRTG | 4 cut(s) | 454, 498, 2589, 3770 |
| Msp20I | TGGCCA | 2 cut(s) | 410, 4068 |
| MspA1I | CMGCKG | 5 cut(s) | 878, 1313, 2101, 2632, 3872 |
| MspI | CCGG | 5 cut(s) | 253, 736, 1117, 1736, 2900 |
| MspR9I | CCNGG | 6 cut(s) | 400, 486, 737, 3237, 3466, 3917 |
| MunI | CAATTG | 1 cut(s) | 1945 |
| Mva1269I | GAATGC | 2 cut(s) | 2410, 3180 |
| MvaI | CCWGG | 5 cut(s) | 400, 486, 3237, 3466, 3917 |
| MvnI | CGCG | 1 cut(s) | 1329 |
| NciI | CCSGG | 1 cut(s) | 737 |
| NcoI | CCATGG | 1 cut(s) | 1863 |
| NdeI | CATATG | 1 cut(s) | 961 |
| NmuCI | GTSAC | 5 cut(s) | 224, 610, 710, 1403, 3166 |
| NspI | RCATGY | 2 cut(s) | 1084, 1246 |
| PaeR7I | CTCGAG | 1 cut(s) | 3710 |
| PceI | AGGCCT | 1 cut(s) | 1779 |
| PciSI | GCTCTTC | 1 cut(s) | 3540 |
| PctI | GAATGC | 2 cut(s) | 2410, 3180 |
| PdmI | GAANNNNTTC | 4 cut(s) | 300, 774, 2907, 3028 |
| Pfl23II | CGTACG | 1 cut(s) | 2018 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 521, 1789 |
| PfoI | TCCNGGA | 1 cut(s) | 398 |
| PleI | GAGTC | 4 cut(s) | 67, 3092, 3486, 4277 |
| PpsI | GAGTC | 4 cut(s) | 67, 3092, 3486, 4277 |
| PpuMI | RGGWCCY | 1 cut(s) | 3233 |
| PshBI | ATTAAT | 1 cut(s) | 2958 |
| Psp124BI | GAGCTC | 4 cut(s) | 1496, 2825, 3343, 3943 |
| Psp1406I | AACGTT | 1 cut(s) | 2969 |
| Psp5II | RGGWCCY | 1 cut(s) | 3233 |
| Psp6I | CCWGG | 5 cut(s) | 398, 484, 3235, 3464, 3915 |
| PspFI | CCCAGC | 2 cut(s) | 756, 3589 |
| PspGI | CCWGG | 5 cut(s) | 398, 484, 3235, 3464, 3915 |
| PspLI | CGTACG | 1 cut(s) | 2018 |
| PspPI | GGNCC | 5 cut(s) | 4, 725, 1907, 3233, 3461 |
| PspPPI | RGGWCCY | 1 cut(s) | 3233 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 966, 998, 3192, 3224 |
| PstI | CTGCAG | 1 cut(s) | 3007 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1789, 3236, 3875 |
| PsuI | RGATCY | 7 cut(s) | 686, 1444, 1687, 1751, 3758, 3919, 4382 |
| PvuII | CAGCTG | 5 cut(s) | 878, 1313, 2101, 2632, 3872 |
| RsaI | GTAC | 9 cut(s) | 673, 1222, 2020, 2025, 2248, 2380, 2693, 3838, 4270 |
| RsaNI | GTAC | 9 cut(s) | 672, 1221, 2019, 2024, 2247, 2379, 2692, 3837, 4269 |
| RseI | CAYNNNNRTG | 4 cut(s) | 454, 498, 2589, 3770 |
| SacI | GAGCTC | 4 cut(s) | 1496, 2825, 3343, 3943 |
| SapI | GCTCTTC | 1 cut(s) | 3540 |
| Sau96I | GGNCC | 5 cut(s) | 4, 725, 1907, 3233, 3461 |
| SchI | GAGTC | 4 cut(s) | 68, 3092, 3487, 4277 |
| ScrFI | CCNGG | 6 cut(s) | 400, 486, 737, 3237, 3466, 3917 |
| SduI | GDGCHC | 9 cut(s) | 756, 1496, 2284, 2394, 2496, 2754, 2825, 3343, 3943 |
| SexAI | ACCWGGT | 1 cut(s) | 3235 |
| SfcI | CTRYAG | 5 cut(s) | 2860, 3003, 3228, 3727, 3923 |
| Sfr274I | CTCGAG | 1 cut(s) | 3710 |
| SinI | GGWCC | 3 cut(s) | 4, 3233, 3461 |
| SlaI | CTCGAG | 1 cut(s) | 3710 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 454, 498, 2589, 3770 |
| SmlI | CTYRAG | 5 cut(s) | 56, 1569, 3649, 3710, 4484 |
| SmoI | CTYRAG | 5 cut(s) | 56, 1569, 3649, 3710, 4484 |
| SpeI | ACTAGT | 1 cut(s) | 1601 |
| SseBI | AGGCCT | 1 cut(s) | 1779 |
| SsiI | CCGC | 5 cut(s) | 2059, 2069, 2366, 3164, 4380 |
| SspI | AATATT | 3 cut(s) | 2620, 2922, 3706 |
| SstI | GAGCTC | 4 cut(s) | 1496, 2825, 3343, 3943 |
| StuI | AGGCCT | 1 cut(s) | 1779 |
| StyD4I | CCNGG | 6 cut(s) | 398, 484, 735, 3235, 3464, 3915 |
| StyI | CCWWGG | 6 cut(s) | 21, 145, 690, 1863, 3410, 4167 |
| TaiI | ACGT | 4 cut(s) | 542, 2134, 2751, 2972 |
| TatI | WGTACW | 2 cut(s) | 2691, 3836 |
| TseFI | GTSAC | 5 cut(s) | 224, 610, 710, 1403, 3166 |
| Tsp45I | GTSAC | 5 cut(s) | 224, 610, 710, 1403, 3166 |
| TspGWI | ACGGA | 2 cut(s) | 3457, 3823 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 521, 1789 |
| VneI | GTGCAC | 2 cut(s) | 2492, 2750 |
| VpaK11BI | GGWCC | 3 cut(s) | 4, 3233, 3461 |
| VspI | ATTAAT | 1 cut(s) | 2958 |
| XapI | RAATTY | 9 cut(s) | 190, 853, 1607, 2601, 2608, 2710, 2811, 2829, 4152 |
| XceI | RCATGY | 2 cut(s) | 1084, 1246 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1870, 2369 |
| XhoI | CTCGAG | 1 cut(s) | 3710 |
| XmiI | GTMKAC | 5 cut(s) | 927, 2859, 3975, 4201, 4209 |
| XmnI | GAANNNNTTC | 4 cut(s) | 300, 774, 2907, 3028 |