pycom03g09240

DNA helicase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
7705505 .. 7711036
5532 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g09240.5

Sequence Viewer

Length: 1431 bp
ATGGGCCTTGGAAAGACCATTCAGGCCATGGCATTTTTGGCTCATTTATCTGAGGAGAAAAATATTTGGGGGCCTTTTCTGGTTGTTGCTCCTGCCTCTGTCTTGAACAACTGGGCAGATGAAATTAGTCGTTTCTGCCCTGACTTAAAAACTCTTCCATACTGGGGAGGAGTTAACGAGCGTCAGGTACTTAGGAAAAAGATCACTGCTAAAAAACTTTACTGCAGGGATGCTGGATTTCATATTCTCATTACCAGCTACCAGCTGCTAGTGGCTGATGGAAAGTATTTTAAACGTGTGAAATGGCAGTATATGGTATTAGATGAAGCCCAAGCAATAAAAAGTTCTAACAGCATAAGATGGAAGACACTTCTAGGCTTTAATTGTCGAAATCGCTTGCTGCTTACCGGTACACCTATACAAAATAATATGGCAGAGTTGTGGGCTCTACTACATTTCATTATGCCAACCTTATTTGACAGCCATGAACAATTCAATGAGTGGTTTTCAAAAGGAATTGAAAACCATGCTGAACATGGGGGTACTCTGAACGAGCACCAGCTTAACAGATTGCACTCCATATTAAAGCCATTCATGCTACGCCGAGTTAAAGCAGATGTGGTTTCTGAGCTGACCAGGAAAACTGAGGTTACTGTGCACTGCAAGTTGAGCCCTCGGCAACAAGCTTTTTATCAAGCGATCAAGAACAAAATATCTCTTGCTGAGTTGTTTGACAGCAATCGCGGTCATCTTAGTGAGAAGAAAATTTTGAATTTGATGAATATTGTCATTCAGCTGAGAAAGGTCTGCAACCATCCCGAATTATTTGAGAGGAACGAAGGAATTACATATCTATACTTTAGTGAGATACCAAATTCTCTTCTAGCTCCTCCATTTGGGGAGTTGGAGGATGTGCACTACTCAGGAGGTCAAAATCCTATAACATACTCGATCCCTAAACTTTTCTATCAAGAAATTCTTCGGAGCTCTGAAACTGTTTGCTCAGCAGTTCGACATGGTGTCTACAAAGAATCATTTGAGAAATATTTTAACATATTTTCACCGGGAAATGTTTATCAATCAACACTCTTGCAAGAGAATGGCTCATCTGTTGGAAGTGGAACCTTTGGCTTTACTCGTATGATGGATCTGTCCCCTGCTGAGGTGGCATTTCTAGGAACTGGTTCTTTTATGGAGCGACTGATGTTTTCCATTGTGAGATGGGACCGACAGTTTTTGGATGGAATTGTGGACTCACTAATGGAAACCATGAATGATGTTTCTGAATGCAGTCATCTTGAGAATGGACAAGTGAGAGCTGTTACACGAATGTTGCTGATGCCTTCTAGATCTGTAACTAACTTTCTTCAAAAGAAATTGGCTACAGGACCTGGTGATCGATCCATTCGAGGCTTTGGTTGTCTCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

477

Amino Acids

54.35

Weight (kDa)

8.94

Isoelectric Point (pI)

42.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1023
AccII CGCG 1 cut(s) 744
AciI CCGC 1 cut(s) 744
AclWI GGATC 3 cut(s) 946, 1155, 1395
AcsI RAATTY 4 cut(s) 765, 772, 874, 975
AfaI GTAC 3 cut(s) 189, 412, 544
AfiI CCNNNNNNNGG 3 cut(s) 164, 896, 1162
AflIII ACRYGT 1 cut(s) 295
AgeI ACCGGT 1 cut(s) 407
AgsI TTSAA 6 cut(s) 106, 496, 510, 521, 772, 1370
AhdI GACNNNNNGTC 1 cut(s) 1019
AjnI CCWGG 2 cut(s) 635, 1390
AluBI AGCT 9 cut(s) 258, 265, 562, 631, 686, 796, 887, 987, 1319
AluI AGCT 9 cut(s) 258, 265, 562, 631, 686, 796, 887, 987, 1319
Alw21I GWGCWC 4 cut(s) 558, 660, 918, 989
Alw26I GTCTC 1 cut(s) 1427
Alw44I GTGCAC 2 cut(s) 656, 914
AlwI GGATC 3 cut(s) 946, 1155, 1395
AlwNI CAGNNNCTG 1 cut(s) 1391
AoxI GGCC 3 cut(s) 4, 24, 71
ApaLI GTGCAC 2 cut(s) 656, 914
ApeKI GCWGC 2 cut(s) 265, 400
ApoI RAATTY 4 cut(s) 765, 772, 874, 975
AsiGI ACCGGT 1 cut(s) 407
Asp700I GAANNNNTTC 2 cut(s) 978, 1183
AspS9I GGNCC 4 cut(s) 4, 71, 1225, 1388
AsuC2I CCSGG 1 cut(s) 1065
AsuHPI GGTGA 2 cut(s) 1053, 1406
AvaII GGWCC 2 cut(s) 1225, 1388
BaeGI GKGCMC 2 cut(s) 660, 918
BanII GRGCYC 3 cut(s) 448, 674, 989
BbsI GAAGAC 1 cut(s) 371
Bbv12I GWGCWC 4 cut(s) 558, 660, 918, 989
BbvCI CCTCAGC 1 cut(s) 1161
BbvI GCAGC 2 cut(s) 252, 387
BccI CCATC 6 cut(s) 272, 354, 822, 1138, 1215, 1235
BciT130I CCWGG 2 cut(s) 637, 1392
BcnI CCSGG 1 cut(s) 1065
BcoDI GTCTC 1 cut(s) 1427
BfaI CTAG 5 cut(s) 269, 374, 884, 1175, 1347
BfmI CTRYAG 2 cut(s) 223, 1383
BglII AGATCT 1 cut(s) 1349
BisI GCNGC 2 cut(s) 266, 401
BlpI GCTNAGC 1 cut(s) 1003
BlsI GCNGC 2 cut(s) 267, 402
Bme1390I CCNGG 3 cut(s) 637, 1065, 1392
Bme18I GGWCC 2 cut(s) 1225, 1388
BmeRI GACNNNNNGTC 1 cut(s) 1019
BmgT120I GGNCC 4 cut(s) 4, 71, 1225, 1388
BmiI GGNNCC 3 cut(s) 72, 1123, 1226
BmrFI CCNGG 3 cut(s) 637, 1065, 1392
BmrI ACTGGG 2 cut(s) 121, 172
BmsI GCATC 2 cut(s) 220, 1329
BmuI ACTGGG 2 cut(s) 121, 172
BpiI GAAGAC 1 cut(s) 371
BplI GAGNNNNNCTC 2 cut(s) 1088, 1120
Bpu10I CCTNAGC 1 cut(s) 1161
Bpu1102I GCTNAGC 1 cut(s) 1003
BpuEI CTTGAG 1 cut(s) 1319
BpuMI CCSGG 1 cut(s) 1065
Bsa29I ATCGAT 1 cut(s) 1399
BsaJI CCNNGG 3 cut(s) 7, 27, 674
BsaWI WCCGGW 1 cut(s) 407
Bsc4I CCNNNNNNNGG 3 cut(s) 164, 896, 1162
Bse118I RCCGGY 1 cut(s) 407
Bse1I ACTGG 3 cut(s) 116, 167, 1186
BseBI CCWGG 2 cut(s) 637, 1392
BseCI ATCGAT 1 cut(s) 1399
BseDI CCNNGG 3 cut(s) 7, 27, 674
BseGI GGATG 4 cut(s) 235, 814, 916, 1246
BseLI CCNNNNNNNGG 3 cut(s) 164, 896, 1162
BseMII CTCAG 8 cut(s) 42, 618, 636, 714, 788, 936, 1017, 1152
BseNI ACTGG 3 cut(s) 116, 167, 1186
BseRI GAGGAG 3 cut(s) 68, 183, 879
BseSI GKGCMC 2 cut(s) 660, 918
BseXI GCAGC 2 cut(s) 252, 387
Bsh1236I CGCG 1 cut(s) 744
BshFI GGCC 3 cut(s) 6, 26, 73
BshTI ACCGGT 1 cut(s) 407
BshVI ATCGAT 1 cut(s) 1399
BsiHKAI GWGCWC 4 cut(s) 558, 660, 918, 989
BsiSI CCGG 2 cut(s) 408, 1064
BslFI GGGAC 2 cut(s) 1138, 1238
BslI CCNNNNNNNGG 3 cut(s) 164, 896, 1162
BsmAI GTCTC 1 cut(s) 1427
BsmFI GGGAC 2 cut(s) 1138, 1238
BsmI GAATGC 1 cut(s) 1292
BsnI GGCC 3 cut(s) 6, 26, 73
Bsp1286I GDGCHC 6 cut(s) 448, 558, 660, 674, 918, 989
Bsp143I GATC 7 cut(s) 201, 699, 951, 1147, 1349, 1396, 1400
Bsp1720I GCTNAGC 1 cut(s) 1003
Bsp19I CCATGG 1 cut(s) 27
BspACI CCGC 1 cut(s) 744
BspANI GGCC 3 cut(s) 6, 26, 73
BspCNI CTCAG 8 cut(s) 43, 619, 637, 715, 789, 935, 1016, 1153
BspDI ATCGAT 1 cut(s) 1399
BspFNI CGCG 1 cut(s) 744
BspLI GGNNCC 3 cut(s) 72, 1123, 1226
BspMAI CTGCAG 1 cut(s) 227
BspPI GGATC 3 cut(s) 946, 1155, 1395
BsrFI RCCGGY 1 cut(s) 407
BsrI ACTGG 3 cut(s) 116, 167, 1186
BssAI RCCGGY 1 cut(s) 407
BssECI CCNNGG 3 cut(s) 7, 27, 674
BssMI GATC 7 cut(s) 201, 699, 951, 1147, 1349, 1396, 1400
BssT1I CCWWGG 2 cut(s) 7, 27
Bst2UI CCWGG 2 cut(s) 637, 1392
Bst4CI ACNGT 3 cut(s) 655, 997, 1233
Bst6I CTCTTC 2 cut(s) 159, 885
BstC8I GCNNGC 1 cut(s) 398
BstDSI CCRYGG 1 cut(s) 27
BstF5I GGATG 4 cut(s) 235, 814, 916, 1246
BstFNI CGCG 1 cut(s) 744
BstKTI GATC 7 cut(s) 204, 702, 954, 1150, 1352, 1399, 1403
BstMAI GTCTC 1 cut(s) 1427
BstMBI GATC 7 cut(s) 201, 699, 951, 1147, 1349, 1396, 1400
BstMWI GCNNNNNNNGC 4 cut(s) 38, 595, 669, 1166
BstNI CCWGG 2 cut(s) 637, 1392
BstSCI CCNGG 3 cut(s) 635, 1063, 1390
BstSFI CTRYAG 2 cut(s) 223, 1383
BstSLI GKGCMC 2 cut(s) 660, 918
BstUI CGCG 1 cut(s) 744
BstV1I GCAGC 2 cut(s) 252, 387
BstV2I GAAGAC 1 cut(s) 371
BstX2I RGATCY 2 cut(s) 1147, 1349
BstYI RGATCY 2 cut(s) 1147, 1349
Bsu15I ATCGAT 1 cut(s) 1399
BsuRI GGCC 3 cut(s) 6, 26, 73
BsuTUI ATCGAT 1 cut(s) 1399
BtgI CCRYGG 1 cut(s) 27
BtsCI GGATG 4 cut(s) 235, 814, 916, 1246
BtsI GCAGTG 2 cut(s) 204, 658
BtsIMutI CAGTG 2 cut(s) 204, 658
Cac8I GCNNGC 1 cut(s) 398
CaiI CAGNNNCTG 1 cut(s) 1391
Cfr10I RCCGGY 1 cut(s) 407
Cfr13I GGNCC 4 cut(s) 4, 71, 1225, 1388
ClaI ATCGAT 1 cut(s) 1399
CseI GACGC 1 cut(s) 170
CsiI ACCWGGT 1 cut(s) 1390
Csp6I GTAC 3 cut(s) 188, 411, 543
CspAI ACCGGT 1 cut(s) 407
CviAII CATG 7 cut(s) 28, 485, 527, 536, 595, 1016, 1270
CviQI GTAC 3 cut(s) 188, 411, 543
DpnI GATC 7 cut(s) 203, 701, 953, 1149, 1351, 1398, 1402
DpnII GATC 7 cut(s) 201, 699, 951, 1147, 1349, 1396, 1400
DraI TTTAAA 1 cut(s) 292
DriI GACNNNNNGTC 1 cut(s) 1019
Eam1104I CTCTTC 2 cut(s) 159, 885
Eam1105I GACNNNNNGTC 1 cut(s) 1019
EarI CTCTTC 2 cut(s) 159, 885
Ecl136II GAGCTC 1 cut(s) 987
Eco130I CCWWGG 2 cut(s) 7, 27
Eco24I GRGCYC 3 cut(s) 448, 674, 989
Eco47I GGWCC 2 cut(s) 1225, 1388
Eco53kI GAGCTC 1 cut(s) 987
EcoICRI GAGCTC 1 cut(s) 987
EcoO109I RGGNCCY 2 cut(s) 71, 1388
EcoRII CCWGG 2 cut(s) 635, 1390
EcoT14I CCWWGG 2 cut(s) 7, 27
EcoT38I GRGCYC 3 cut(s) 448, 674, 989
ErhI CCWWGG 2 cut(s) 7, 27
FaeI CATG 7 cut(s) 31, 488, 530, 539, 598, 1019, 1273
FalI AAGNNNNNCTT 2 cut(s) 963, 995
FaqI GGGAC 2 cut(s) 1138, 1238
FatI CATG 7 cut(s) 27, 484, 526, 535, 594, 1015, 1269
FblI GTMKAC 1 cut(s) 1023
Fnu4HI GCNGC 2 cut(s) 266, 401
FokI GGATG 4 cut(s) 242, 801, 923, 1253
FriOI GRGCYC 3 cut(s) 448, 674, 989
Fsp4HI GCNGC 2 cut(s) 266, 401
FspBI CTAG 5 cut(s) 269, 374, 884, 1175, 1347
GluI GCNGC 2 cut(s) 266, 401
HaeIII GGCC 3 cut(s) 6, 26, 73
HapII CCGG 2 cut(s) 408, 1064
HgaI GACGC 1 cut(s) 170
Hin1II CATG 7 cut(s) 31, 488, 530, 539, 598, 1019, 1273
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HindIII AAGCTT 1 cut(s) 684
HinfI GANTC 2 cut(s) 1031, 1253
HpaI GTTAAC 1 cut(s) 175
HpaII CCGG 2 cut(s) 408, 1064
HphI GGTGA 2 cut(s) 1053, 1406
Hpy166II GTNNAC 6 cut(s) 175, 413, 658, 916, 1024, 1252
Hpy188I TCNGA 6 cut(s) 52, 549, 628, 984, 991, 1285
Hpy188III TCNNGA 7 cut(s) 103, 703, 818, 924, 971, 1298, 1347
Hpy8I GTNNAC 6 cut(s) 175, 413, 658, 916, 1024, 1252
HpyAV CCTTC 2 cut(s) 833, 1353
HpyCH4III ACNGT 3 cut(s) 655, 997, 1233
HpyCH4IV ACGT 1 cut(s) 295
HpyCH4V TGCA 8 cut(s) 225, 574, 658, 663, 810, 916, 1093, 1290
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 595, 669, 1166
HpySE526I ACGT 1 cut(s) 295
Hsp92II CATG 7 cut(s) 31, 488, 530, 539, 598, 1019, 1273
KspAI GTTAAC 1 cut(s) 175
Kzo9I GATC 7 cut(s) 201, 699, 951, 1147, 1349, 1396, 1400
LmnI GCTCC 4 cut(s) 94, 892, 984, 1195
Lsp1109I GCAGC 2 cut(s) 252, 387
LweI GCATC 2 cut(s) 220, 1329
MabI ACCWGGT 1 cut(s) 1390
MaeI CTAG 5 cut(s) 269, 374, 884, 1175, 1347
MaeII ACGT 1 cut(s) 295
MaeIII GTNAC 3 cut(s) 649, 1321, 1354
MalI GATC 7 cut(s) 203, 701, 953, 1149, 1351, 1398, 1402
MboI GATC 7 cut(s) 201, 699, 951, 1147, 1349, 1396, 1400
MboII GAAGA 6 cut(s) 146, 376, 772, 872, 971, 1358
MflI RGATCY 2 cut(s) 1147, 1349
MhlI GDGCHC 6 cut(s) 448, 558, 660, 674, 918, 989
MlyI GAGTC 1 cut(s) 1247
MmeI TCCRAC 2 cut(s) 885, 1093
MroXI GAANNNNTTC 2 cut(s) 978, 1183
MseI TTAA 8 cut(s) 146, 174, 291, 381, 564, 584, 609, 1050
MslI CAYNNNNRTG 1 cut(s) 753
MspA1I CMGCKG 2 cut(s) 265, 796
MspI CCGG 2 cut(s) 408, 1064
MspR9I CCNGG 3 cut(s) 637, 1065, 1392
Mva1269I GAATGC 1 cut(s) 1292
MvaI CCWGG 2 cut(s) 637, 1392
MvnI CGCG 1 cut(s) 744
MwoI GCNNNNNNNGC 4 cut(s) 38, 595, 669, 1166
NciI CCSGG 1 cut(s) 1065
NcoI CCATGG 1 cut(s) 27
NdeII GATC 7 cut(s) 201, 699, 951, 1147, 1349, 1396, 1400
NlaIII CATG 7 cut(s) 31, 488, 530, 539, 598, 1019, 1273
NlaIV GGNNCC 3 cut(s) 72, 1123, 1226
NmeAIII GCCGAG 2 cut(s) 629, 655
PcsI WCGNNNNNNNCGW 1 cut(s) 1405
PctI GAATGC 1 cut(s) 1292
PdmI GAANNNNTTC 2 cut(s) 978, 1183
PfeI GAWTC 1 cut(s) 1031
PinAI ACCGGT 1 cut(s) 407
PkrI GCNGC 2 cut(s) 267, 402
PleI GAGTC 1 cut(s) 1247
PpsI GAGTC 1 cut(s) 1247
PpuMI RGGWCCY 1 cut(s) 1388
Psp124BI GAGCTC 1 cut(s) 989
Psp5II RGGWCCY 1 cut(s) 1388
Psp6I CCWGG 2 cut(s) 635, 1390
PspGI CCWGG 2 cut(s) 635, 1390
PspN4I GGNNCC 3 cut(s) 72, 1123, 1226
PspPI GGNCC 4 cut(s) 4, 71, 1225, 1388
PspPPI RGGWCCY 1 cut(s) 1388
PstI CTGCAG 1 cut(s) 227
PstNI CAGNNNCTG 1 cut(s) 1391
PsuI RGATCY 2 cut(s) 1147, 1349
PvuII CAGCTG 2 cut(s) 265, 796
RsaI GTAC 3 cut(s) 189, 412, 544
RsaNI GTAC 3 cut(s) 188, 411, 543
RseI CAYNNNNRTG 1 cut(s) 753
SacI GAGCTC 1 cut(s) 989
SaqAI TTAA 8 cut(s) 146, 174, 291, 381, 564, 584, 609, 1050
SatI GCNGC 2 cut(s) 266, 401
Sau3AI GATC 7 cut(s) 201, 699, 951, 1147, 1349, 1396, 1400
Sau96I GGNCC 4 cut(s) 4, 71, 1225, 1388
SchI GAGTC 1 cut(s) 1247
ScrFI CCNGG 3 cut(s) 637, 1065, 1392
SduI GDGCHC 6 cut(s) 448, 558, 660, 674, 918, 989
SexAI ACCWGGT 1 cut(s) 1390
SfaNI GCATC 2 cut(s) 220, 1329
SfcI CTRYAG 2 cut(s) 223, 1383
SinI GGWCC 2 cut(s) 1225, 1388
SmiMI CAYNNNNRTG 1 cut(s) 753
SmlI CTYRAG 1 cut(s) 1298
SmoI CTYRAG 1 cut(s) 1298
SsiI CCGC 1 cut(s) 744
SspI AATATT 3 cut(s) 64, 784, 1046
SspMI CTAG 5 cut(s) 269, 374, 884, 1175, 1347
SstI GAGCTC 1 cut(s) 989
StyD4I CCNGG 3 cut(s) 635, 1063, 1390
StyI CCWWGG 2 cut(s) 7, 27
TaaI ACNGT 3 cut(s) 655, 997, 1233
TaiI ACGT 1 cut(s) 298
TaqI TCGA 5 cut(s) 388, 950, 1012, 1399, 1408
TaqII GACCGA 1 cut(s) 1242
TfiI GAWTC 1 cut(s) 1031
Tru1I TTAA 8 cut(s) 146, 174, 291, 381, 564, 584, 609, 1050
Tru9I TTAA 8 cut(s) 146, 174, 291, 381, 564, 584, 609, 1050
TscAI CASTG 2 cut(s) 211, 665
TseI GCWGC 2 cut(s) 265, 400
TspDTI ATGAA 8 cut(s) 135, 230, 339, 448, 501, 583, 794, 1286
TspRI CASTG 2 cut(s) 211, 665
VneI GTGCAC 2 cut(s) 656, 914
VpaK11BI GGWCC 2 cut(s) 1225, 1388
XapI RAATTY 4 cut(s) 765, 772, 874, 975
XbaI TCTAGA 1 cut(s) 1346
XcmI CCANNNNNNNNNTGG 3 cut(s) 25, 34, 533
XmiI GTMKAC 1 cut(s) 1023
XmnI GAANNNNTTC 2 cut(s) 978, 1183
XspI CTAG 5 cut(s) 269, 374, 884, 1175, 1347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.