Rorug03G0208400

DNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0005736
Physical Location & Seq
Reverse (-)
18552739 .. 18552930
192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0208400.1

Sequence Viewer

Length: 192 bp
ATGGTGGTGTGGTCGTATCCGCCGACGCGGAAGCAGCTTGTTGTGACGGCGTGCTGTTTCGTCGCCGGGATGGGACTGTTCGGCGTCGGAGCTCACCTGTCGCTGGCCAACGTGGGGCCACAGCAAGAACGGGTCAAGGCGCGCAGGGAGTTTGTCAAGGACCGCCTGAGAAAGCTTCTGGATGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBINO Helicase_C SNF2_N

Protein Analysis

63

Amino Acids

7.07

Weight (kDa)

9.59

Isoelectric Point (pI)

36.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 28, 142
AciI CCGC 3 cut(s) 20, 28, 163
AcoI YGGCCR 1 cut(s) 105
AcyI GRCGYC 1 cut(s) 84
AfiI CCNNNNNNNGG 2 cut(s) 103, 114
AluBI AGCT 3 cut(s) 37, 92, 175
AluI AGCT 3 cut(s) 37, 92, 175
Alw21I GWGCWC 1 cut(s) 94
AoxI GGCC 2 cut(s) 105, 116
ApeKI GCWGC 1 cut(s) 34
AspLEI GCGC 2 cut(s) 142, 144
AspS9I GGNCC 2 cut(s) 116, 160
AsuC2I CCSGG 1 cut(s) 67
AsuHPI GGTGA 1 cut(s) 86
AvaII GGWCC 1 cut(s) 160
BalI TGGCCA 1 cut(s) 107
BanII GRGCYC 1 cut(s) 94
Bbv12I GWGCWC 1 cut(s) 94
BbvI GCAGC 1 cut(s) 46
BccI CCATC 1 cut(s) 64
BceAI ACGGC 1 cut(s) 63
BciVI GTATCC 1 cut(s) 27
BcnI CCSGG 1 cut(s) 67
BfuI GTATCC 1 cut(s) 27
BisI GCNGC 1 cut(s) 35
BlsI GCNGC 1 cut(s) 36
Bme1390I CCNGG 1 cut(s) 67
Bme18I GGWCC 1 cut(s) 160
BmgT120I GGNCC 2 cut(s) 116, 160
BmiI GGNNCC 1 cut(s) 117
BmrFI CCNGG 1 cut(s) 67
BpuMI CCSGG 1 cut(s) 67
BsaHI GRCGYC 1 cut(s) 84
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 114
BseGI GGATG 2 cut(s) 75, 187
BseLI CCNNNNNNNGG 2 cut(s) 103, 114
BseMII CTCAG 1 cut(s) 158
BsePI GCGCGC 1 cut(s) 140
BseXI GCAGC 1 cut(s) 46
Bsh1236I CGCG 2 cut(s) 28, 142
BshFI GGCC 2 cut(s) 107, 118
BsiHKAI GWGCWC 1 cut(s) 94
BsiSI CCGG 1 cut(s) 66
BslFI GGGAC 1 cut(s) 87
BslI CCNNNNNNNGG 2 cut(s) 103, 114
BsmFI GGGAC 1 cut(s) 87
BsnI GGCC 2 cut(s) 107, 118
Bsp1286I GDGCHC 1 cut(s) 94
BspACI CCGC 3 cut(s) 20, 28, 163
BspANI GGCC 2 cut(s) 107, 118
BspCNI CTCAG 1 cut(s) 159
BspFNI CGCG 2 cut(s) 28, 142
BspLI GGNNCC 1 cut(s) 117
BssHII GCGCGC 1 cut(s) 140
BssNI GRCGYC 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 78
BstACI GRCGYC 1 cut(s) 84
BstC8I GCNNGC 3 cut(s) 52, 105, 142
BstDEI CTNAG 1 cut(s) 167
BstF5I GGATG 2 cut(s) 75, 187
BstFNI CGCG 2 cut(s) 28, 142
BstHHI GCGC 2 cut(s) 142, 144
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstSCI CCNGG 1 cut(s) 65
BstUI CGCG 2 cut(s) 28, 142
BstV1I GCAGC 1 cut(s) 46
BsuI GTATCC 1 cut(s) 27
BsuRI GGCC 2 cut(s) 107, 118
BtsCI GGATG 2 cut(s) 75, 187
Cac8I GCNNGC 3 cut(s) 52, 105, 142
CfoI GCGC 2 cut(s) 142, 144
Cfr13I GGNCC 2 cut(s) 116, 160
CseI GACGC 2 cut(s) 34, 73
CviJI RGCY 5 cut(s) 37, 92, 107, 118, 175
CviKI_1 RGCY 5 cut(s) 37, 92, 107, 118, 175
DdeI CTNAG 1 cut(s) 167
EaeI YGGCCR 1 cut(s) 105
EciI GGCGGA 1 cut(s) 9
Ecl136II GAGCTC 1 cut(s) 92
Eco24I GRGCYC 1 cut(s) 94
Eco47I GGWCC 1 cut(s) 160
Eco53kI GAGCTC 1 cut(s) 92
EcoICRI GAGCTC 1 cut(s) 92
EcoT38I GRGCYC 1 cut(s) 94
FaqI GGGAC 1 cut(s) 87
Fnu4HI GCNGC 1 cut(s) 35
FokI GGATG 1 cut(s) 82
FriOI GRGCYC 1 cut(s) 94
Fsp4HI GCNGC 1 cut(s) 35
GlaI GCGC 2 cut(s) 141, 143
GluI GCNGC 1 cut(s) 35
HaeIII GGCC 2 cut(s) 107, 118
HapII CCGG 1 cut(s) 66
HgaI GACGC 2 cut(s) 34, 73
HhaI GCGC 2 cut(s) 142, 144
Hin1I GRCGYC 1 cut(s) 84
Hin6I GCGC 2 cut(s) 140, 142
HinP1I GCGC 2 cut(s) 140, 142
HindIII AAGCTT 1 cut(s) 173
HpaII CCGG 1 cut(s) 66
HphI GGTGA 1 cut(s) 86
Hpy188I TCNGA 1 cut(s) 89
Hpy188III TCNNGA 1 cut(s) 179
Hpy99I CGWCG 3 cut(s) 28, 65, 89
HpyCH4III ACNGT 1 cut(s) 78
HpyCH4IV ACGT 1 cut(s) 111
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
HpyF3I CTNAG 1 cut(s) 167
HpySE526I ACGT 1 cut(s) 111
Hsp92I GRCGYC 1 cut(s) 84
HspAI GCGC 2 cut(s) 140, 142
LmnI GCTCC 1 cut(s) 89
LpnPI CCDG 6 cut(s) 79, 89, 110, 130, 164, 179
Lsp1109I GCAGC 1 cut(s) 46
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 1 cut(s) 43
MhlI GDGCHC 1 cut(s) 94
MlsI TGGCCA 1 cut(s) 107
MluNI TGGCCA 1 cut(s) 107
MmeI TCCRAC 1 cut(s) 67
Mox20I TGGCCA 1 cut(s) 107
MscI TGGCCA 1 cut(s) 107
Msp20I TGGCCA 1 cut(s) 107
MspI CCGG 1 cut(s) 66
MspR9I CCNGG 1 cut(s) 67
MvnI CGCG 2 cut(s) 28, 142
MwoI GCNNNNNNNGC 1 cut(s) 34
NciI CCSGG 1 cut(s) 67
NlaIV GGNNCC 1 cut(s) 117
NmuCI GTSAC 1 cut(s) 43
PauI GCGCGC 1 cut(s) 140
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PkrI GCNGC 1 cut(s) 36
Psp124BI GAGCTC 1 cut(s) 94
PspN4I GGNNCC 1 cut(s) 117
PspPI GGNCC 2 cut(s) 116, 160
PteI GCGCGC 1 cut(s) 140
SacI GAGCTC 1 cut(s) 94
SatI GCNGC 1 cut(s) 35
Sau96I GGNCC 2 cut(s) 116, 160
ScrFI CCNGG 1 cut(s) 67
SduI GDGCHC 1 cut(s) 94
SetI ASST 5 cut(s) 39, 94, 99, 114, 177
SinI GGWCC 1 cut(s) 160
SsiI CCGC 3 cut(s) 20, 28, 163
SstI GAGCTC 1 cut(s) 94
StyD4I CCNGG 1 cut(s) 65
TaaI ACNGT 1 cut(s) 78
TaiI ACGT 1 cut(s) 114
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 1 cut(s) 34
Tsp45I GTSAC 1 cut(s) 43
VpaK11BI GGWCC 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.