E3 ubiquitin-protein ligase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G03450 AT5G03750 |
| fragaria_vesca | FvH4_6g16560 FvH4_6g16560 |
| malus_domestica | MD12G1109200.v1.1 |
| prunus_persica | Prupe.7G127800_v2.0.a1 |
| pyrus_communis | pycom12g10940 |
| rosa_chinensis | RchiOBHm_Chr3g0470481 |
| rosa_laevigata | RLG00000024263 |
| rosa_multiflora | Rmu_sc0002115.1_g000004 Rmu_sc0003381.1_g000011 |
| rosa_roxburghii | Rroxscaffold_4G00302270 Rroxscaffold_6G00410770 |
| rosa_rugosa | Rorug03G0109400 Rorug03G0109500 |
| rosa_samantha | Rh3AG159800 Rh3BG184300 Rh3CG174800 Rh3DG190600 |
| rosa_wichuraiana | Rw3G015120 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1532 |
| Acc36I | ACCTGC | 1 cut(s) | 910 |
| AccB1I | GGYRCC | 1 cut(s) | 218 |
| AccII | CGCG | 3 cut(s) | 533, 1571, 1863 |
| AciI | CCGC | 3 cut(s) | 277, 1407, 1592 |
| AclI | AACGTT | 1 cut(s) | 1437 |
| AclWI | GGATC | 3 cut(s) | 1233, 1696, 1847 |
| AcsI | RAATTY | 2 cut(s) | 226, 496 |
| AcuI | CTGAAG | 2 cut(s) | 1470, 1918 |
| AfaI | GTAC | 4 cut(s) | 179, 1353, 1874, 1939 |
| AfeI | AGCGCT | 1 cut(s) | 1011 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1607 |
| AflII | CTTAAG | 1 cut(s) | 1838 |
| AflIII | ACRYGT | 1 cut(s) | 1214 |
| AgsI | TTSAA | 6 cut(s) | 85, 538, 803, 1240, 1416, 1888 |
| AjnI | CCWGG | 2 cut(s) | 1220, 1940 |
| AleI | CACNNNNGTG | 1 cut(s) | 1707 |
| AluBI | AGCT | 7 cut(s) | 287, 647, 668, 715, 871, 1376, 1905 |
| AluI | AGCT | 7 cut(s) | 287, 647, 668, 715, 871, 1376, 1905 |
| Alw21I | GWGCWC | 1 cut(s) | 934 |
| Alw26I | GTCTC | 1 cut(s) | 747 |
| AlwI | GGATC | 3 cut(s) | 1233, 1696, 1847 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1307, 1671 |
| Aor51HI | AGCGCT | 1 cut(s) | 1011 |
| AoxI | GGCC | 3 cut(s) | 795, 1304, 1457 |
| ApeKI | GCWGC | 6 cut(s) | 71, 487, 697, 1202, 1205, 1665 |
| ApoI | RAATTY | 2 cut(s) | 226, 496 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 718, 750 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 571 |
| AspA2I | CCTAGG | 1 cut(s) | 1135 |
| AspLEI | GCGC | 3 cut(s) | 533, 1012, 1293 |
| AspS9I | GGNCC | 6 cut(s) | 61, 405, 795, 1087, 1304, 1457 |
| AsuC2I | CCSGG | 1 cut(s) | 78 |
| AsuHPI | GGTGA | 4 cut(s) | 5, 413, 428, 1928 |
| AvaII | GGWCC | 3 cut(s) | 61, 405, 1087 |
| AvrII | CCTAGG | 1 cut(s) | 1135 |
| BaeGI | GKGCMC | 2 cut(s) | 450, 512 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1022, 1055 |
| BanI | GGYRCC | 1 cut(s) | 218 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1344, 1376 |
| BauI | CACGAG | 1 cut(s) | 231 |
| BbsI | GAAGAC | 4 cut(s) | 111, 120, 150, 156 |
| Bbv12I | GWGCWC | 1 cut(s) | 934 |
| BbvCI | CCTCAGC | 1 cut(s) | 258 |
| BbvI | GCAGC | 6 cut(s) | 83, 499, 709, 1189, 1192, 1677 |
| BccI | CCATC | 6 cut(s) | 35, 86, 308, 365, 920, 1822 |
| BceAI | ACGGC | 1 cut(s) | 782 |
| BciT130I | CCWGG | 2 cut(s) | 1222, 1942 |
| BclI | TGATCA | 1 cut(s) | 418 |
| BcnI | CCSGG | 1 cut(s) | 78 |
| BcoDI | GTCTC | 1 cut(s) | 747 |
| BfaI | CTAG | 4 cut(s) | 1065, 1136, 1392, 1518 |
| BfmI | CTRYAG | 4 cut(s) | 191, 482, 695, 1299 |
| BfoI | RGCGCY | 1 cut(s) | 1013 |
| BfrI | CTTAAG | 1 cut(s) | 1838 |
| BfuAI | ACCTGC | 1 cut(s) | 910 |
| BglII | AGATCT | 1 cut(s) | 1067 |
| BisI | GCNGC | 6 cut(s) | 72, 488, 698, 1203, 1206, 1666 |
| BlnI | CCTAGG | 1 cut(s) | 1135 |
| BlpI | GCTNAGC | 1 cut(s) | 1901 |
| BlsI | GCNGC | 6 cut(s) | 73, 489, 699, 1204, 1207, 1667 |
| Bme1390I | CCNGG | 3 cut(s) | 78, 1222, 1942 |
| Bme18I | GGWCC | 3 cut(s) | 61, 405, 1087 |
| BmgT120I | GGNCC | 6 cut(s) | 61, 405, 795, 1087, 1304, 1457 |
| BmiI | GGNNCC | 5 cut(s) | 220, 796, 1088, 1470, 1636 |
| BmrFI | CCNGG | 3 cut(s) | 78, 1222, 1942 |
| BmsI | GCATC | 5 cut(s) | 194, 824, 940, 962, 1778 |
| BpiI | GAAGAC | 4 cut(s) | 111, 120, 150, 156 |
| BpmI | CTGGAG | 1 cut(s) | 309 |
| Bpu10I | CCTNAGC | 1 cut(s) | 258 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1901 |
| BpuEI | CTTGAG | 3 cut(s) | 632, 653, 1853 |
| BpuMI | CCSGG | 1 cut(s) | 78 |
| Bsa29I | ATCGAT | 1 cut(s) | 369 |
| BsaBI | GATNNNNATC | 1 cut(s) | 814 |
| BsaJI | CCNNGG | 4 cut(s) | 340, 1135, 1221, 1606 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1607 |
| Bse118I | RCCGGY | 1 cut(s) | 1198 |
| Bse1I | ACTGG | 1 cut(s) | 356 |
| Bse3DI | GCAATG | 1 cut(s) | 256 |
| Bse8I | GATNNNNATC | 1 cut(s) | 814 |
| BseBI | CCWGG | 2 cut(s) | 1222, 1942 |
| BseCI | ATCGAT | 1 cut(s) | 369 |
| BseDI | CCNNGG | 4 cut(s) | 340, 1135, 1221, 1606 |
| BseGI | GGATG | 2 cut(s) | 547, 1179 |
| BseJI | GATNNNNATC | 1 cut(s) | 814 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1607 |
| BseMI | GCAATG | 1 cut(s) | 256 |
| BseMII | CTCAG | 2 cut(s) | 249, 1171 |
| BseNI | ACTGG | 1 cut(s) | 356 |
| BseSI | GKGCMC | 2 cut(s) | 450, 512 |
| BseXI | GCAGC | 6 cut(s) | 83, 499, 709, 1189, 1192, 1677 |
| BseYI | CCCAGC | 1 cut(s) | 989 |
| BsgI | GTGCAG | 1 cut(s) | 348 |
| Bsh1236I | CGCG | 3 cut(s) | 533, 1571, 1863 |
| BshFI | GGCC | 3 cut(s) | 797, 1306, 1459 |
| BshNI | GGYRCC | 1 cut(s) | 218 |
| BshVI | ATCGAT | 1 cut(s) | 369 |
| BsiHKAI | GWGCWC | 1 cut(s) | 934 |
| BsiSI | CCGG | 3 cut(s) | 77, 222, 1199 |
| BslFI | GGGAC | 3 cut(s) | 1015, 1100, 1533 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1607 |
| BsmAI | GTCTC | 1 cut(s) | 747 |
| BsmFI | GGGAC | 3 cut(s) | 1015, 1100, 1533 |
| BsmI | GAATGC | 1 cut(s) | 196 |
| BsnI | GGCC | 3 cut(s) | 797, 1306, 1459 |
| Bsp1286I | GDGCHC | 3 cut(s) | 450, 512, 934 |
| Bsp1407I | TGTACA | 2 cut(s) | 177, 1351 |
| Bsp143I | GATC | 7 cut(s) | 418, 1067, 1192, 1225, 1688, 1852, 1864 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1901 |
| Bsp68I | TCGCGA | 1 cut(s) | 1863 |
| BspACI | CCGC | 3 cut(s) | 277, 1407, 1592 |
| BspANI | GGCC | 3 cut(s) | 797, 1306, 1459 |
| BspCNI | CTCAG | 2 cut(s) | 250, 1170 |
| BspDI | ATCGAT | 1 cut(s) | 369 |
| BspFNI | CGCG | 3 cut(s) | 533, 1571, 1863 |
| BspHI | TCATGA | 1 cut(s) | 1949 |
| BspLI | GGNNCC | 5 cut(s) | 220, 796, 1088, 1470, 1636 |
| BspMAI | CTGCAG | 2 cut(s) | 699, 1303 |
| BspMI | ACCTGC | 1 cut(s) | 910 |
| BspPI | GGATC | 3 cut(s) | 1233, 1696, 1847 |
| BspQI | GCTCTTC | 1 cut(s) | 277 |
| BspT107I | GGYRCC | 1 cut(s) | 218 |
| BspTI | CTTAAG | 1 cut(s) | 1838 |
| BsrDI | GCAATG | 1 cut(s) | 256 |
| BsrFI | RCCGGY | 1 cut(s) | 1198 |
| BsrGI | TGTACA | 2 cut(s) | 177, 1351 |
| BsrI | ACTGG | 1 cut(s) | 356 |
| BssAI | RCCGGY | 1 cut(s) | 1198 |
| BssECI | CCNNGG | 4 cut(s) | 340, 1135, 1221, 1606 |
| BssMI | GATC | 7 cut(s) | 418, 1067, 1192, 1225, 1688, 1852, 1864 |
| BssSI | CACGAG | 1 cut(s) | 231 |
| BssT1I | CCWWGG | 2 cut(s) | 340, 1135 |
| Bst2BI | CACGAG | 1 cut(s) | 231 |
| Bst2UI | CCWGG | 2 cut(s) | 1222, 1942 |
| Bst6I | CTCTTC | 3 cut(s) | 277, 1800, 1937 |
| BstAFI | CTTAAG | 1 cut(s) | 1838 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1127 |
| BstAUI | TGTACA | 2 cut(s) | 177, 1351 |
| BstC8I | GCNNGC | 4 cut(s) | 247, 987, 1132, 1696 |
| BstDEI | CTNAG | 5 cut(s) | 258, 832, 1157, 1744, 1901 |
| BstDSI | CCRYGG | 1 cut(s) | 1606 |
| BstF5I | GGATG | 2 cut(s) | 547, 1179 |
| BstFNI | CGCG | 3 cut(s) | 533, 1571, 1863 |
| BstH2I | RGCGCY | 1 cut(s) | 1013 |
| BstHHI | GCGC | 3 cut(s) | 533, 1012, 1293 |
| BstKTI | GATC | 7 cut(s) | 421, 1070, 1195, 1228, 1691, 1855, 1867 |
| BstMAI | GTCTC | 1 cut(s) | 747 |
| BstMBI | GATC | 7 cut(s) | 418, 1067, 1192, 1225, 1688, 1852, 1864 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 390, 487, 516, 794, 1127 |
| BstNI | CCWGG | 2 cut(s) | 1222, 1942 |
| BstNSI | RCATGY | 2 cut(s) | 1218, 1698 |
| BstSCI | CCNGG | 3 cut(s) | 76, 1220, 1940 |
| BstSFI | CTRYAG | 4 cut(s) | 191, 482, 695, 1299 |
| BstSLI | GKGCMC | 2 cut(s) | 450, 512 |
| BstUI | CGCG | 3 cut(s) | 533, 1571, 1863 |
| BstV1I | GCAGC | 6 cut(s) | 83, 499, 709, 1189, 1192, 1677 |
| BstV2I | GAAGAC | 4 cut(s) | 111, 120, 150, 156 |
| BstX2I | RGATCY | 4 cut(s) | 1067, 1225, 1688, 1852 |
| BstYI | RGATCY | 4 cut(s) | 1067, 1225, 1688, 1852 |
| Bsu15I | ATCGAT | 1 cut(s) | 369 |
| BsuRI | GGCC | 3 cut(s) | 797, 1306, 1459 |
| BsuTUI | ATCGAT | 1 cut(s) | 369 |
| BtgI | CCRYGG | 1 cut(s) | 1606 |
| BtgZI | GCGATG | 2 cut(s) | 327, 1739 |
| BtsCI | GGATG | 2 cut(s) | 547, 1179 |
| BtsI | GCAGTG | 2 cut(s) | 331, 1528 |
| BtsIMutI | CAGTG | 8 cut(s) | 246, 331, 349, 1117, 1121, 1404, 1528, 1635 |
| BtuMI | TCGCGA | 1 cut(s) | 1863 |
| BveI | ACCTGC | 1 cut(s) | 910 |
| Cac8I | GCNNGC | 4 cut(s) | 247, 987, 1132, 1696 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1307, 1671 |
| CciI | TCATGA | 1 cut(s) | 1949 |
| CfoI | GCGC | 3 cut(s) | 533, 1012, 1293 |
| Cfr10I | RCCGGY | 1 cut(s) | 1198 |
| Cfr13I | GGNCC | 6 cut(s) | 61, 405, 795, 1087, 1304, 1457 |
| ClaI | ATCGAT | 1 cut(s) | 369 |
| CseI | GACGC | 1 cut(s) | 1577 |
| Csp6I | GTAC | 4 cut(s) | 178, 1352, 1873, 1938 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 413, 448 |
| CviAII | CATG | 4 cut(s) | 791, 1215, 1695, 1950 |
| CviQI | GTAC | 4 cut(s) | 178, 1352, 1873, 1938 |
| DdeI | CTNAG | 5 cut(s) | 258, 832, 1157, 1744, 1901 |
| DpnI | GATC | 7 cut(s) | 420, 1069, 1194, 1227, 1690, 1854, 1866 |
| DpnII | GATC | 7 cut(s) | 418, 1067, 1192, 1225, 1688, 1852, 1864 |
| DraI | TTTAAA | 1 cut(s) | 1678 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1532 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1532 |
| Eam1104I | CTCTTC | 3 cut(s) | 277, 1800, 1937 |
| EarI | CTCTTC | 3 cut(s) | 277, 1800, 1937 |
| Eco130I | CCWWGG | 2 cut(s) | 340, 1135 |
| Eco32I | GATATC | 1 cut(s) | 1714 |
| Eco47I | GGWCC | 3 cut(s) | 61, 405, 1087 |
| Eco47III | AGCGCT | 1 cut(s) | 1011 |
| Eco57I | CTGAAG | 2 cut(s) | 1470, 1918 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1087, 1304 |
| EcoRII | CCWGG | 2 cut(s) | 1220, 1940 |
| EcoRV | GATATC | 1 cut(s) | 1714 |
| EcoT14I | CCWWGG | 2 cut(s) | 340, 1135 |
| EcoT22I | ATGCAT | 1 cut(s) | 955 |
| ErhI | CCWWGG | 2 cut(s) | 340, 1135 |
| FaeI | CATG | 4 cut(s) | 794, 1218, 1698, 1953 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1884, 1916 |
| FaqI | GGGAC | 3 cut(s) | 1015, 1100, 1533 |
| FatI | CATG | 4 cut(s) | 790, 1214, 1694, 1949 |
| FbaI | TGATCA | 1 cut(s) | 418 |
| Fnu4HI | GCNGC | 6 cut(s) | 72, 488, 698, 1203, 1206, 1666 |
| FokI | GGATG | 2 cut(s) | 554, 1166 |
| Fsp4HI | GCNGC | 6 cut(s) | 72, 488, 698, 1203, 1206, 1666 |
| FspBI | CTAG | 4 cut(s) | 1065, 1136, 1392, 1518 |
| GlaI | GCGC | 3 cut(s) | 532, 1011, 1292 |
| GluI | GCNGC | 6 cut(s) | 72, 488, 698, 1203, 1206, 1666 |
| GsaI | CCCAGC | 1 cut(s) | 993 |
| GsuI | CTGGAG | 1 cut(s) | 309 |
| HaeII | RGCGCY | 1 cut(s) | 1013 |
| HaeIII | GGCC | 3 cut(s) | 797, 1306, 1459 |
| HapII | CCGG | 3 cut(s) | 77, 222, 1199 |
| HgaI | GACGC | 1 cut(s) | 1577 |
| HhaI | GCGC | 3 cut(s) | 533, 1012, 1293 |
| Hin1II | CATG | 4 cut(s) | 794, 1218, 1698, 1953 |
| Hin6I | GCGC | 3 cut(s) | 531, 1010, 1291 |
| HinP1I | GCGC | 3 cut(s) | 531, 1010, 1291 |
| HincII | GTYRAC | 1 cut(s) | 580 |
| HindII | GTYRAC | 1 cut(s) | 580 |
| HindIII | AAGCTT | 1 cut(s) | 713 |
| HinfI | GANTC | 7 cut(s) | 81, 355, 587, 601, 626, 863, 1483 |
| HpaII | CCGG | 3 cut(s) | 77, 222, 1199 |
| HphI | GGTGA | 4 cut(s) | 5, 413, 428, 1928 |
| Hpy166II | GTNNAC | 5 cut(s) | 178, 580, 709, 878, 1875 |
| Hpy188I | TCNGA | 4 cut(s) | 360, 1567, 1718, 1774 |
| Hpy188III | TCNNGA | 9 cut(s) | 38, 233, 564, 632, 774, 978, 1831, 1862, 1950 |
| Hpy8I | GTNNAC | 5 cut(s) | 178, 580, 709, 878, 1875 |
| Hpy99I | CGWCG | 3 cut(s) | 47, 416, 1571 |
| HpyCH4IV | ACGT | 1 cut(s) | 1437 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 390, 487, 516, 794, 1127 |
| HpyF3I | CTNAG | 5 cut(s) | 258, 832, 1157, 1744, 1901 |
| HpySE526I | ACGT | 1 cut(s) | 1437 |
| Hsp92II | CATG | 4 cut(s) | 794, 1218, 1698, 1953 |
| HspAI | GCGC | 3 cut(s) | 531, 1010, 1291 |
| Ksp22I | TGATCA | 1 cut(s) | 418 |
| Kzo9I | GATC | 7 cut(s) | 418, 1067, 1192, 1225, 1688, 1852, 1864 |
| LguI | GCTCTTC | 1 cut(s) | 277 |
| LmnI | GCTCC | 2 cut(s) | 644, 739 |
| Lsp1109I | GCAGC | 6 cut(s) | 83, 499, 709, 1189, 1192, 1677 |
| LweI | GCATC | 5 cut(s) | 194, 824, 940, 962, 1778 |
| MaeI | CTAG | 4 cut(s) | 1065, 1136, 1392, 1518 |
| MaeII | ACGT | 1 cut(s) | 1437 |
| MaeIII | GTNAC | 4 cut(s) | 606, 1112, 1523, 1916 |
| MalI | GATC | 7 cut(s) | 420, 1069, 1194, 1227, 1690, 1854, 1866 |
| MboI | GATC | 7 cut(s) | 418, 1067, 1192, 1225, 1688, 1852, 1864 |
| MfeI | CAATTG | 1 cut(s) | 1416 |
| MflI | RGATCY | 4 cut(s) | 1067, 1225, 1688, 1852 |
| MhlI | GDGCHC | 3 cut(s) | 450, 512, 934 |
| MlyI | GAGTC | 2 cut(s) | 349, 857 |
| MmeI | TCCRAC | 1 cut(s) | 1590 |
| Mph1103I | ATGCAT | 1 cut(s) | 955 |
| MroXI | GAANNNNTTC | 1 cut(s) | 571 |
| MseI | TTAA | 6 cut(s) | 155, 971, 1677, 1784, 1839, 1910 |
| MslI | CAYNNNNRTG | 4 cut(s) | 201, 216, 453, 1707 |
| MspCI | CTTAAG | 1 cut(s) | 1838 |
| MspI | CCGG | 3 cut(s) | 77, 222, 1199 |
| MspR9I | CCNGG | 3 cut(s) | 78, 1222, 1942 |
| MunI | CAATTG | 1 cut(s) | 1416 |
| Mva1269I | GAATGC | 1 cut(s) | 196 |
| MvaI | CCWGG | 2 cut(s) | 1222, 1942 |
| MvnI | CGCG | 3 cut(s) | 533, 1571, 1863 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 390, 487, 516, 794, 1127 |
| NciI | CCSGG | 1 cut(s) | 78 |
| NdeII | GATC | 7 cut(s) | 418, 1067, 1192, 1225, 1688, 1852, 1864 |
| NlaIII | CATG | 4 cut(s) | 794, 1218, 1698, 1953 |
| NlaIV | GGNNCC | 5 cut(s) | 220, 796, 1088, 1470, 1636 |
| NmuCI | GTSAC | 4 cut(s) | 606, 1112, 1523, 1916 |
| NruI | TCGCGA | 1 cut(s) | 1863 |
| NsiI | ATGCAT | 1 cut(s) | 955 |
| NspI | RCATGY | 2 cut(s) | 1218, 1698 |
| OliI | CACNNNNGTG | 1 cut(s) | 1707 |
| PaeI | GCATGC | 1 cut(s) | 1698 |
| PagI | TCATGA | 1 cut(s) | 1949 |
| PciI | ACATGT | 1 cut(s) | 1214 |
| PciSI | GCTCTTC | 1 cut(s) | 277 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 114 |
| PctI | GAATGC | 1 cut(s) | 196 |
| PdmI | GAANNNNTTC | 1 cut(s) | 571 |
| PfeI | GAWTC | 5 cut(s) | 81, 587, 601, 626, 1483 |
| PkrI | GCNGC | 6 cut(s) | 73, 489, 699, 1204, 1207, 1667 |
| PleI | GAGTC | 2 cut(s) | 349, 857 |
| PpsI | GAGTC | 2 cut(s) | 349, 857 |
| PpuMI | RGGWCCY | 1 cut(s) | 1087 |
| PscI | ACATGT | 1 cut(s) | 1214 |
| Psp1406I | AACGTT | 1 cut(s) | 1437 |
| Psp5II | RGGWCCY | 1 cut(s) | 1087 |
| Psp6I | CCWGG | 2 cut(s) | 1220, 1940 |
| PspFI | CCCAGC | 1 cut(s) | 989 |
| PspGI | CCWGG | 2 cut(s) | 1220, 1940 |
| PspN4I | GGNNCC | 5 cut(s) | 220, 796, 1088, 1470, 1636 |
| PspPI | GGNCC | 6 cut(s) | 61, 405, 795, 1087, 1304, 1457 |
| PspPPI | RGGWCCY | 1 cut(s) | 1087 |
| PstI | CTGCAG | 2 cut(s) | 699, 1303 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1307, 1671 |
| PsuI | RGATCY | 4 cut(s) | 1067, 1225, 1688, 1852 |
| RruI | TCGCGA | 1 cut(s) | 1863 |
| RsaI | GTAC | 4 cut(s) | 179, 1353, 1874, 1939 |
| RsaNI | GTAC | 4 cut(s) | 178, 1352, 1873, 1938 |
| RseI | CAYNNNNRTG | 4 cut(s) | 201, 216, 453, 1707 |
| SapI | GCTCTTC | 1 cut(s) | 277 |
| SaqAI | TTAA | 6 cut(s) | 155, 971, 1677, 1784, 1839, 1910 |
| SatI | GCNGC | 6 cut(s) | 72, 488, 698, 1203, 1206, 1666 |
| Sau3AI | GATC | 7 cut(s) | 418, 1067, 1192, 1225, 1688, 1852, 1864 |
| Sau96I | GGNCC | 6 cut(s) | 61, 405, 795, 1087, 1304, 1457 |
| SchI | GAGTC | 2 cut(s) | 349, 857 |
| ScrFI | CCNGG | 3 cut(s) | 78, 1222, 1942 |
| SduI | GDGCHC | 3 cut(s) | 450, 512, 934 |
| SfaNI | GCATC | 5 cut(s) | 194, 824, 940, 962, 1778 |
| SfcI | CTRYAG | 4 cut(s) | 191, 482, 695, 1299 |
| SinI | GGWCC | 3 cut(s) | 61, 405, 1087 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 201, 216, 453, 1707 |
| SmlI | CTYRAG | 4 cut(s) | 611, 632, 1838, 1868 |
| SmoI | CTYRAG | 4 cut(s) | 611, 632, 1838, 1868 |
| SphI | GCATGC | 1 cut(s) | 1698 |
| SsiI | CCGC | 3 cut(s) | 277, 1407, 1592 |
| SspMI | CTAG | 4 cut(s) | 1065, 1136, 1392, 1518 |
| StyD4I | CCNGG | 3 cut(s) | 76, 1220, 1940 |
| StyI | CCWWGG | 2 cut(s) | 340, 1135 |
| TaiI | ACGT | 1 cut(s) | 1440 |
| TaqI | TCGA | 2 cut(s) | 369, 1740 |
| TaqII | GACCGA | 1 cut(s) | 594 |
| TatI | WGTACW | 3 cut(s) | 177, 1351, 1872 |
| TfiI | GAWTC | 5 cut(s) | 81, 587, 601, 626, 1483 |
| Tru1I | TTAA | 6 cut(s) | 155, 971, 1677, 1784, 1839, 1910 |
| Tru9I | TTAA | 6 cut(s) | 155, 971, 1677, 1784, 1839, 1910 |
| TscAI | CASTG | 8 cut(s) | 246, 331, 356, 1117, 1128, 1404, 1528, 1635 |
| TseFI | GTSAC | 4 cut(s) | 606, 1112, 1523, 1916 |
| TseI | GCWGC | 6 cut(s) | 71, 487, 697, 1202, 1205, 1665 |
| Tsp45I | GTSAC | 4 cut(s) | 606, 1112, 1523, 1916 |
| TspDTI | ATGAA | 6 cut(s) | 117, 126, 378, 889, 1334, 1938 |
| TspGWI | ACGGA | 3 cut(s) | 179, 1026, 1493 |
| TspRI | CASTG | 8 cut(s) | 246, 331, 356, 1117, 1128, 1404, 1528, 1635 |
| Vha464I | CTTAAG | 1 cut(s) | 1838 |
| VpaK11BI | GGWCC | 3 cut(s) | 61, 405, 1087 |
| XapI | RAATTY | 2 cut(s) | 226, 496 |
| XceI | RCATGY | 2 cut(s) | 1218, 1698 |
| XmaJI | CCTAGG | 1 cut(s) | 1135 |
| XmnI | GAANNNNTTC | 1 cut(s) | 571 |
| XspI | CTAG | 4 cut(s) | 1065, 1136, 1392, 1518 |
| Zsp2I | ATGCAT | 1 cut(s) | 955 |