Rorug03G0109400

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0011045
Physical Location & Seq
Reverse (-)
8786574 .. 8787198
625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0109400.1

Sequence Viewer

Length: 246 bp
ATGATAAGCACATCATGGGGTGCCCCCGCTGCTTTCACCAAAGGTTTCAACCTTCAGCATGTCTCTGATGGTCTCTATGGGAGGCATCTTCATGTCTACAGTTGGCCTGAGGGTGAATTGAAACGAACTTTGGATCTTGGCAATGCAGGACTCTTACCCTTGGAGGCGATAGAGGCTGATAATGTTATGGGCTCAAGTAGGGTTGATGAATTTGCTGAACCTGTTTTACAATATGGACACAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0000724 GO:0000725 GO:0002039 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0010564 GO:0010948 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022402 GO:0031297 GO:0031570 GO:0031571 GO:0031974 GO:0031981 GO:0032446 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045005 GO:0045786 GO:0045930 GO:0046483 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080134 GO:0080135 GO:0090304 GO:0090734 GO:0097371 GO:0140096 GO:1901360 GO:1901564 GO:1901576 GO:1901976 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902806 GO:1902807 GO:1903047 GO:2000001 GO:2000045 GO:2000134 GO:2001020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

81

Amino Acids

8.93

Weight (kDa)

5.38

Isoelectric Point (pI)

35.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP56 PF05694 1 - 56 8.8e-17 56kDa selenium binding protein (SBP56)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011045)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03450 AT5G03750
fragaria_vesca FvH4_6g16560 FvH4_6g16560
malus_domestica MD12G1109200.v1.1
prunus_persica Prupe.7G127800_v2.0.a1
pyrus_communis pycom12g10940
rosa_chinensis RchiOBHm_Chr3g0470481
rosa_laevigata RLG00000024263
rosa_multiflora Rmu_sc0002115.1_g000004 Rmu_sc0003381.1_g000011
rosa_roxburghii Rroxscaffold_4G00302270 Rroxscaffold_6G00410770
rosa_rugosa Rorug03G0109400 Rorug03G0109500
rosa_samantha Rh3AG159800 Rh3BG184300 Rh3CG174800 Rh3DG190600
rosa_wichuraiana Rw3G015120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 20
AccI GTMKAC 1 cut(s) 96
AciI CCGC 1 cut(s) 27
AclWI GGATC 1 cut(s) 141
AcsI RAATTY 1 cut(s) 209
AcuI CTGAAG 1 cut(s) 38
AgsI TTSAA 2 cut(s) 49, 121
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
Alw26I GTCTC 2 cut(s) 67, 77
AlwI GGATC 1 cut(s) 141
AoxI GGCC 1 cut(s) 104
ApeKI GCWGC 1 cut(s) 29
ApoI RAATTY 1 cut(s) 209
AsuHPI GGTGA 2 cut(s) 28, 125
AxyI CCTNAGG 1 cut(s) 108
BaeGI GKGCMC 1 cut(s) 25
BanI GGYRCC 1 cut(s) 20
BanII GRGCYC 1 cut(s) 194
BbvI GCAGC 1 cut(s) 16
BccI CCATC 1 cut(s) 62
BcoDI GTCTC 2 cut(s) 67, 77
BfmI CTRYAG 1 cut(s) 97
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
BmiI GGNNCC 1 cut(s) 22
BmsI GCATC 1 cut(s) 94
BpuEI CTTGAG 1 cut(s) 178
BsaI GGTCTC 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 159
Bse21I CCTNAGG 1 cut(s) 108
Bse3DI GCAATG 1 cut(s) 148
BseDI CCNNGG 1 cut(s) 159
BseMI GCAATG 1 cut(s) 148
BseMII CTCAG 1 cut(s) 99
BseSI GKGCMC 1 cut(s) 25
BseXI GCAGC 1 cut(s) 16
BshFI GGCC 1 cut(s) 106
BshNI GGYRCC 1 cut(s) 20
BsmAI GTCTC 2 cut(s) 67, 77
BsnI GGCC 1 cut(s) 106
Bso31I GGTCTC 1 cut(s) 77
Bsp1286I GDGCHC 2 cut(s) 25, 194
Bsp143I GATC 1 cut(s) 133
BspACI CCGC 1 cut(s) 27
BspANI GGCC 1 cut(s) 106
BspCNI CTCAG 1 cut(s) 100
BspLI GGNNCC 1 cut(s) 22
BspPI GGATC 1 cut(s) 141
BspT107I GGYRCC 1 cut(s) 20
BspTNI GGTCTC 1 cut(s) 77
BsrDI GCAATG 1 cut(s) 148
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 1 cut(s) 133
BssT1I CCWWGG 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 101
BstDEI CTNAG 1 cut(s) 108
BstKTI GATC 1 cut(s) 136
BstMAI GTCTC 2 cut(s) 67, 77
BstMBI GATC 1 cut(s) 133
BstMWI GCNNNNNNNGC 2 cut(s) 29, 173
BstNSI RCATGY 1 cut(s) 62
BstSFI CTRYAG 1 cut(s) 97
BstSLI GKGCMC 1 cut(s) 25
BstV1I GCAGC 1 cut(s) 16
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
Bsu36I CCTNAGG 1 cut(s) 108
BsuRI GGCC 1 cut(s) 106
CviAII CATG 3 cut(s) 15, 59, 92
CviJI RGCY 3 cut(s) 106, 176, 192
CviKI_1 RGCY 3 cut(s) 106, 176, 192
DdeI CTNAG 1 cut(s) 108
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
Eco130I CCWWGG 1 cut(s) 159
Eco24I GRGCYC 1 cut(s) 194
Eco31I GGTCTC 1 cut(s) 77
Eco57I CTGAAG 1 cut(s) 38
Eco81I CCTNAGG 1 cut(s) 108
EcoT14I CCWWGG 1 cut(s) 159
EcoT38I GRGCYC 1 cut(s) 194
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 3 cut(s) 18, 62, 95
FaiI YATR 6 cut(s) 16, 60, 78, 93, 188, 234
FatI CATG 3 cut(s) 14, 58, 91
FauI CCCGC 1 cut(s) 34
FblI GTMKAC 1 cut(s) 96
Fnu4HI GCNGC 1 cut(s) 30
FriOI GRGCYC 1 cut(s) 194
Fsp4HI GCNGC 1 cut(s) 30
GluI GCNGC 1 cut(s) 30
HaeIII GGCC 1 cut(s) 106
Hin1II CATG 3 cut(s) 18, 62, 95
HinfI GANTC 1 cut(s) 150
HphI GGTGA 2 cut(s) 28, 125
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 1 cut(s) 67
Hpy8I GTNNAC 1 cut(s) 97
HpyAV CCTTC 1 cut(s) 62
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4V TGCA 1 cut(s) 146
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 173
HpyF3I CTNAG 1 cut(s) 108
Hsp92II CATG 3 cut(s) 18, 62, 95
Kzo9I GATC 1 cut(s) 133
LpnPI CCDG 4 cut(s) 120, 132, 226, 234
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 1 cut(s) 94
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 1 cut(s) 80
MflI RGATCY 1 cut(s) 133
MhlI GDGCHC 2 cut(s) 25, 194
MluCI AATT 2 cut(s) 116, 209
MlyI GAGTC 1 cut(s) 144
MnlI CCTC 4 cut(s) 75, 103, 157, 166
MslI CAYNNNNRTG 1 cut(s) 90
MspA1I CMGCKG 1 cut(s) 29
MwoI GCNNNNNNNGC 2 cut(s) 29, 173
NdeII GATC 1 cut(s) 133
NlaIII CATG 3 cut(s) 18, 62, 95
NlaIV GGNNCC 1 cut(s) 22
NspI RCATGY 1 cut(s) 62
PkrI GCNGC 1 cut(s) 31
PleI GAGTC 1 cut(s) 144
PpsI GAGTC 1 cut(s) 144
PspN4I GGNNCC 1 cut(s) 22
PsrI GAACNNNNNNTAC 2 cut(s) 210, 242
PsuI RGATCY 1 cut(s) 133
RseI CAYNNNNRTG 1 cut(s) 90
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 1 cut(s) 133
SchI GAGTC 1 cut(s) 144
SduI GDGCHC 2 cut(s) 25, 194
SetI ASST 4 cut(s) 46, 54, 223, 245
SfaNI GCATC 1 cut(s) 94
SfcI CTRYAG 1 cut(s) 97
SmiMI CAYNNNNRTG 1 cut(s) 90
SmlI CTYRAG 1 cut(s) 193
SmoI CTYRAG 1 cut(s) 193
Sse9I AATT 2 cut(s) 116, 209
SsiI CCGC 1 cut(s) 27
StyI CCWWGG 1 cut(s) 159
TaaI ACNGT 1 cut(s) 101
TasI AATT 2 cut(s) 116, 209
TseI GCWGC 1 cut(s) 29
TspDTI ATGAA 2 cut(s) 80, 222
XapI RAATTY 1 cut(s) 209
XceI RCATGY 1 cut(s) 62
XmiI GTMKAC 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.