E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G03450 AT5G03750 |
| fragaria_vesca | FvH4_6g16560 FvH4_6g16560 |
| malus_domestica | MD12G1109200.v1.1 |
| prunus_persica | Prupe.7G127800_v2.0.a1 |
| pyrus_communis | pycom12g10940 |
| rosa_chinensis | RchiOBHm_Chr3g0470481 |
| rosa_laevigata | RLG00000024263 |
| rosa_multiflora | Rmu_sc0002115.1_g000004 Rmu_sc0003381.1_g000011 |
| rosa_roxburghii | Rroxscaffold_4G00302270 Rroxscaffold_6G00410770 |
| rosa_rugosa | Rorug03G0109400 Rorug03G0109500 |
| rosa_samantha | Rh3AG159800 Rh3BG184300 Rh3CG174800 Rh3DG190600 |
| rosa_wichuraiana | Rw3G015120 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 317 |
| AciI | CCGC | 1 cut(s) | 315 |
| AcsI | RAATTY | 3 cut(s) | 304, 326, 815 |
| AcuI | CTGAAG | 1 cut(s) | 179 |
| AfaI | GTAC | 2 cut(s) | 356, 552 |
| AgsI | TTSAA | 8 cut(s) | 244, 250, 504, 532, 548, 654, 688, 804 |
| AjnI | CCWGG | 1 cut(s) | 841 |
| AluBI | AGCT | 3 cut(s) | 93, 538, 544 |
| AluI | AGCT | 3 cut(s) | 93, 538, 544 |
| Alw21I | GWGCWC | 1 cut(s) | 35 |
| Alw26I | GTCTC | 2 cut(s) | 199, 581 |
| AoxI | GGCC | 5 cut(s) | 15, 237, 281, 440, 701 |
| ApeKI | GCWGC | 3 cut(s) | 341, 535, 722 |
| ApoI | RAATTY | 3 cut(s) | 304, 326, 815 |
| AspS9I | GGNCC | 2 cut(s) | 282, 701 |
| AsuHPI | GGTGA | 1 cut(s) | 16 |
| BaeGI | GKGCMC | 1 cut(s) | 849 |
| Bbv12I | GWGCWC | 1 cut(s) | 35 |
| BbvI | GCAGC | 3 cut(s) | 328, 547, 734 |
| BccI | CCATC | 1 cut(s) | 440 |
| BciT130I | CCWGG | 1 cut(s) | 843 |
| BcoDI | GTCTC | 2 cut(s) | 199, 581 |
| BisI | GCNGC | 3 cut(s) | 342, 536, 723 |
| BlsI | GCNGC | 3 cut(s) | 343, 537, 724 |
| Bme1390I | CCNGG | 1 cut(s) | 843 |
| BmgT120I | GGNCC | 2 cut(s) | 282, 701 |
| BmiI | GGNNCC | 1 cut(s) | 284 |
| BmrFI | CCNGG | 1 cut(s) | 843 |
| BmsI | GCATC | 1 cut(s) | 734 |
| BpmI | CTGGAG | 1 cut(s) | 524 |
| BsaJI | CCNNGG | 1 cut(s) | 842 |
| Bse3DI | GCAATG | 1 cut(s) | 394 |
| BseBI | CCWGG | 1 cut(s) | 843 |
| BseDI | CCNNGG | 1 cut(s) | 842 |
| BseGI | GGATG | 4 cut(s) | 280, 517, 725, 836 |
| BseMI | GCAATG | 1 cut(s) | 394 |
| BseRI | GAGGAG | 1 cut(s) | 639 |
| BseSI | GKGCMC | 1 cut(s) | 849 |
| BseXI | GCAGC | 3 cut(s) | 328, 547, 734 |
| BsgI | GTGCAG | 3 cut(s) | 32, 249, 437 |
| Bsh1236I | CGCG | 1 cut(s) | 317 |
| BshFI | GGCC | 5 cut(s) | 17, 239, 283, 442, 703 |
| BsiHKAI | GWGCWC | 1 cut(s) | 35 |
| BsmAI | GTCTC | 2 cut(s) | 199, 581 |
| BsmBI | CGTCTC | 1 cut(s) | 581 |
| BsnI | GGCC | 5 cut(s) | 17, 239, 283, 442, 703 |
| Bsp1286I | GDGCHC | 2 cut(s) | 35, 849 |
| BspACI | CCGC | 1 cut(s) | 315 |
| BspANI | GGCC | 5 cut(s) | 17, 239, 283, 442, 703 |
| BspFNI | CGCG | 1 cut(s) | 317 |
| BspLI | GGNNCC | 1 cut(s) | 284 |
| BsrDI | GCAATG | 1 cut(s) | 394 |
| BssECI | CCNNGG | 1 cut(s) | 842 |
| Bst2UI | CCWGG | 1 cut(s) | 843 |
| Bst4CI | ACNGT | 1 cut(s) | 214 |
| Bst6I | CTCTTC | 2 cut(s) | 218, 597 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 853 |
| BstC8I | GCNNGC | 3 cut(s) | 15, 35, 237 |
| BstDEI | CTNAG | 1 cut(s) | 473 |
| BstF5I | GGATG | 4 cut(s) | 280, 517, 725, 836 |
| BstFNI | CGCG | 1 cut(s) | 317 |
| BstMAI | GTCTC | 2 cut(s) | 199, 581 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 227, 236, 541, 853 |
| BstNI | CCWGG | 1 cut(s) | 843 |
| BstSCI | CCNGG | 1 cut(s) | 841 |
| BstSLI | GKGCMC | 1 cut(s) | 849 |
| BstUI | CGCG | 1 cut(s) | 317 |
| BstV1I | GCAGC | 3 cut(s) | 328, 547, 734 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 718 |
| BsuRI | GGCC | 5 cut(s) | 17, 239, 283, 442, 703 |
| BtsCI | GGATG | 4 cut(s) | 280, 517, 725, 836 |
| BtsI | GCAGTG | 1 cut(s) | 268 |
| BtsIMutI | CAGTG | 1 cut(s) | 268 |
| Cac8I | GCNNGC | 3 cut(s) | 15, 35, 237 |
| Cfr13I | GGNCC | 2 cut(s) | 282, 701 |
| Csp6I | GTAC | 2 cut(s) | 355, 551 |
| CviAII | CATG | 2 cut(s) | 51, 370 |
| CviQI | GTAC | 2 cut(s) | 355, 551 |
| DdeI | CTNAG | 1 cut(s) | 473 |
| Eam1104I | CTCTTC | 2 cut(s) | 218, 597 |
| EarI | CTCTTC | 2 cut(s) | 218, 597 |
| Eco147I | AGGCCT | 2 cut(s) | 17, 239 |
| Eco57I | CTGAAG | 1 cut(s) | 179 |
| EcoO109I | RGGNCCY | 1 cut(s) | 282 |
| EcoRII | CCWGG | 1 cut(s) | 841 |
| EcoT22I | ATGCAT | 1 cut(s) | 295 |
| Esp3I | CGTCTC | 1 cut(s) | 581 |
| FaeI | CATG | 2 cut(s) | 54, 373 |
| FatI | CATG | 2 cut(s) | 50, 369 |
| FauNDI | CATATG | 1 cut(s) | 295 |
| Fnu4HI | GCNGC | 3 cut(s) | 342, 536, 723 |
| FokI | GGATG | 4 cut(s) | 287, 524, 712, 843 |
| Fsp4HI | GCNGC | 3 cut(s) | 342, 536, 723 |
| GluI | GCNGC | 3 cut(s) | 342, 536, 723 |
| GsuI | CTGGAG | 1 cut(s) | 524 |
| HaeIII | GGCC | 5 cut(s) | 17, 239, 283, 442, 703 |
| Hin1II | CATG | 2 cut(s) | 54, 373 |
| HinfI | GANTC | 6 cut(s) | 80, 170, 299, 451, 650, 772 |
| HphI | GGTGA | 1 cut(s) | 16 |
| Hpy166II | GTNNAC | 1 cut(s) | 357 |
| Hpy188I | TCNGA | 3 cut(s) | 115, 435, 830 |
| Hpy188III | TCNNGA | 1 cut(s) | 780 |
| Hpy8I | GTNNAC | 1 cut(s) | 357 |
| HpyAV | CCTTC | 3 cut(s) | 250, 574, 588 |
| HpyCH4III | ACNGT | 1 cut(s) | 214 |
| HpyCH4V | TGCA | 8 cut(s) | 13, 202, 230, 261, 293, 344, 397, 418 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 227, 236, 541, 853 |
| HpyF3I | CTNAG | 1 cut(s) | 473 |
| Hsp92II | CATG | 2 cut(s) | 54, 373 |
| LmnI | GCTCC | 2 cut(s) | 52, 543 |
| Lsp1109I | GCAGC | 3 cut(s) | 328, 547, 734 |
| LweI | GCATC | 1 cut(s) | 734 |
| MaeIII | GTNAC | 2 cut(s) | 167, 833 |
| MboII | GAAGA | 5 cut(s) | 235, 580, 589, 614, 641 |
| MfeI | CAATTG | 2 cut(s) | 21, 197 |
| MhlI | GDGCHC | 2 cut(s) | 35, 849 |
| MluCI | AATT | 9 cut(s) | 21, 130, 197, 244, 304, 326, 421, 793, 815 |
| MlyI | GAGTC | 1 cut(s) | 164 |
| Mph1103I | ATGCAT | 1 cut(s) | 295 |
| MseI | TTAA | 2 cut(s) | 480, 813 |
| MspR9I | CCNGG | 1 cut(s) | 843 |
| MunI | CAATTG | 2 cut(s) | 21, 197 |
| MvaI | CCWGG | 1 cut(s) | 843 |
| MvnI | CGCG | 1 cut(s) | 317 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 227, 236, 541, 853 |
| NdeI | CATATG | 1 cut(s) | 295 |
| NlaIII | CATG | 2 cut(s) | 54, 373 |
| NlaIV | GGNNCC | 1 cut(s) | 284 |
| NmuCI | GTSAC | 2 cut(s) | 167, 833 |
| NsiI | ATGCAT | 1 cut(s) | 295 |
| PceI | AGGCCT | 2 cut(s) | 17, 239 |
| PfeI | GAWTC | 5 cut(s) | 80, 299, 451, 650, 772 |
| PkrI | GCNGC | 3 cut(s) | 343, 537, 724 |
| PleI | GAGTC | 1 cut(s) | 164 |
| PpsI | GAGTC | 1 cut(s) | 164 |
| Psp6I | CCWGG | 1 cut(s) | 841 |
| PspGI | CCWGG | 1 cut(s) | 841 |
| PspN4I | GGNNCC | 1 cut(s) | 284 |
| PspPI | GGNCC | 2 cut(s) | 282, 701 |
| RsaI | GTAC | 2 cut(s) | 356, 552 |
| RsaNI | GTAC | 2 cut(s) | 355, 551 |
| SaqAI | TTAA | 2 cut(s) | 480, 813 |
| SatI | GCNGC | 3 cut(s) | 342, 536, 723 |
| Sau96I | GGNCC | 2 cut(s) | 282, 701 |
| SchI | GAGTC | 1 cut(s) | 164 |
| ScrFI | CCNGG | 1 cut(s) | 843 |
| SduI | GDGCHC | 2 cut(s) | 35, 849 |
| SetI | ASST | 5 cut(s) | 95, 120, 356, 540, 546 |
| SfaNI | GCATC | 1 cut(s) | 734 |
| Sse9I | AATT | 9 cut(s) | 21, 130, 197, 244, 304, 326, 421, 793, 815 |
| SseBI | AGGCCT | 2 cut(s) | 17, 239 |
| SsiI | CCGC | 1 cut(s) | 315 |
| StuI | AGGCCT | 2 cut(s) | 17, 239 |
| StyD4I | CCNGG | 1 cut(s) | 841 |
| TaaI | ACNGT | 1 cut(s) | 214 |
| TaqI | TCGA | 1 cut(s) | 779 |
| TasI | AATT | 9 cut(s) | 21, 130, 197, 244, 304, 326, 421, 793, 815 |
| TatI | WGTACW | 1 cut(s) | 550 |
| TfiI | GAWTC | 5 cut(s) | 80, 299, 451, 650, 772 |
| Tru1I | TTAA | 2 cut(s) | 480, 813 |
| Tru9I | TTAA | 2 cut(s) | 480, 813 |
| TscAI | CASTG | 1 cut(s) | 268 |
| TseFI | GTSAC | 2 cut(s) | 167, 833 |
| TseI | GCWGC | 3 cut(s) | 341, 535, 722 |
| Tsp45I | GTSAC | 2 cut(s) | 167, 833 |
| TspDTI | ATGAA | 4 cut(s) | 312, 528, 722, 786 |
| TspRI | CASTG | 1 cut(s) | 268 |
| XapI | RAATTY | 3 cut(s) | 304, 326, 815 |
| Zsp2I | ATGCAT | 1 cut(s) | 295 |