Rmu_sc0003381.1_g000011

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003381.1
OG0011045
Physical Location & Seq
Reverse (-)
36838 .. 41757
4920 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003381.1_g000011.1.cds

Sequence Viewer

Length: 1869 bp
atggcagaccctcactatgtgcatcttgacgatgtagatctacaggaagaggatgaagaagcctcagaagaaccatccgtcatcggcgacgttgaagactcagaacaagaagacgaagacgaagaagagccagacgcccaaacggatcccaattatgctctctatctttccagaatgggacccactcatgaggccgaagaagccgactcggattttgaacggcatctggtcagaaccgcttgctttctgagccgcggcggcggcggctgcgacggcaagcggaggagaatcggaaggcaggaaacggcggcgtttgacaccggagagagctcccagagcagtcagtggaatccgagtgaaattgatggcctgttttgcccaatttgcttggaggcttggactaatgacggtgatcactacatctgctgtcttccttgtggacacattttcggtatgtcctgcatcgaaaaatggctaggccagagtaaaagacagggaaagtgtcctcaatgcaatgccaaatgcaagttgaatgatgtgaggaagcttttcacgtcacgagttatttctgttgacgaagaatcacaaaagaggattcgttcacttgaggctaaatgtgcttcttttgagaaggagcgagcagaatggcataagagggaggcagaattgctaaagggacagcatgtactagaactcaaaattcgactacttatagagagcaaagcatcaggatcaatcaatgctactgggacctttgaaagaagattcgtatctgggctaacatttggctctaatacctgtggacaagcatctccttgcagcttcaaattagagaaggagttacctgtagctggtgctcatttgtttgacgttgatgcgtctaaccaaattttgttaatttcgcgaaggcatgctgggataggtggaaaagatgtgcttaccaaaatgagcctgatacctccatatgacagagatgatattgttcttcctagctctttaaattctatcagggacctacgtctttctccttctaacactaaccttgcactctttgcttgcctagggaagaaattggcagttctcagtacggagaacaacaacatcattgtttcctatgacgtaccggctgctgcttggacatgctcatgggatctcaacgattcaaattatatgtatgctggattgcagaatggctatcttctggtgtttgacatgcgccaaacctcagggcctgttgaatccctgaaggggctgacaagaaacccaattcataccgtgcattccctttcatataattcagctcttcccactggtgttagaacagtgatgtccgcatcgtcaattggcttatgtctctggaattttggtggtgctgcaaaggggccaattttggtccctgaaacagagaaccaaggagtttgtatatctcttgcatattgccctagaacagatgacattgttgcttcctatcgccccaaagtcgagttttctgatgaggcagttcttacacaaccaactccttcacgtgccattggacaaggaacagtcggttcccatgttcttttaaagagagcaggcagcagcagtcattttctaaagttgggatcttcatccggcaacgtgtgtgatatcggactgccaaaatctgcaattatcaacatagaaaattgtggcagtttgtttgcatctgaagataaactatcttctgaactagttttagaagagctgtcgtcttttactactgttcagcgccttaacttacagcgaagtcctgttcaggatgtgaagtacacatctttcttaaggaaaggtctcctcagttgtttgaatggtaacacgctgcaactcttcagtaccaagctttcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0000724 GO:0000725 GO:0002039 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0010564 GO:0010948 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022402 GO:0031297 GO:0031570 GO:0031571 GO:0031974 GO:0031981 GO:0032446 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045005 GO:0045786 GO:0045930 GO:0046483 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080134 GO:0080135 GO:0090304 GO:0090734 GO:0097371 GO:0140096 GO:1901360 GO:1901564 GO:1901576 GO:1901976 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902806 GO:1902807 GO:1903047 GO:2000001 GO:2000045 GO:2000134 GO:2001020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

622

Amino Acids

68.24

Weight (kDa)

5.26

Isoelectric Point (pI)

59.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011045)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03450 AT5G03750
fragaria_vesca FvH4_6g16560 FvH4_6g16560
malus_domestica MD12G1109200.v1.1
prunus_persica Prupe.7G127800_v2.0.a1
pyrus_communis pycom12g10940
rosa_chinensis RchiOBHm_Chr3g0470481
rosa_laevigata RLG00000024263
rosa_multiflora Rmu_sc0002115.1_g000004 Rmu_sc0003381.1_g000011
rosa_roxburghii Rroxscaffold_4G00302270 Rroxscaffold_6G00410770
rosa_rugosa Rorug03G0109400 Rorug03G0109500
rosa_samantha Rh3AG159800 Rh3BG184300 Rh3CG174800 Rh3DG190600
rosa_wichuraiana Rw3G015120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 255, 904
AciI CCGC 9 cut(s) 237, 253, 255, 258, 261, 264, 280, 308, 1332
AclWI GGATC 5 cut(s) 140, 153, 739, 1158, 1612
AcsI RAATTY 4 cut(s) 699, 888, 1000, 1360
AcuI CTGAAG 3 cut(s) 1265, 1710, 1834
AcvI CACGTG 1 cut(s) 1526
AcyI GRCGYC 1 cut(s) 135
AdeI CACNNNGTG 1 cut(s) 19
AfaI GTAC 5 cut(s) 687, 1087, 1122, 1790, 1855
AfiI CCNNNNNNNGG 2 cut(s) 851, 1248
AflII CTTAAG 1 cut(s) 1801
AflIII ACRYGT 1 cut(s) 1620
AgsI TTSAA 8 cut(s) 95, 218, 532, 758, 826, 1164, 1238, 1828
AhlI ACTAGT 1 cut(s) 1711
AjiI CACGTC 1 cut(s) 555
AluBI AGCT 8 cut(s) 330, 547, 822, 851, 993, 1301, 1726, 1861
AluI AGCT 8 cut(s) 330, 547, 822, 851, 993, 1301, 1726, 1861
Alw21I GWGCWC 2 cut(s) 332, 859
Alw26I GTCTC 2 cut(s) 1358, 1817
AlwI GGATC 5 cut(s) 140, 153, 739, 1158, 1612
AlwNI CAGNNNCTG 1 cut(s) 1232
AoxI GGCC 5 cut(s) 192, 367, 478, 1229, 1382
ApeKI GCWGC 8 cut(s) 267, 819, 1127, 1130, 1373, 1578, 1581, 1840
ApoI RAATTY 4 cut(s) 699, 888, 1000, 1360
ArsI GACNNNNNNTTYG 2 cut(s) 197, 229
Asp700I GAANNNNTTC 1 cut(s) 548
AspA2I CCTAGG 1 cut(s) 1060
AspLEI GCGC 2 cut(s) 1218, 1752
AspS9I GGNCC 6 cut(s) 179, 750, 1012, 1229, 1382, 1393
AsuHPI GGTGA 1 cut(s) 422
AvaII GGWCC 4 cut(s) 179, 750, 1012, 1393
AvrII CCTAGG 1 cut(s) 1060
AxyI CCTNAGG 1 cut(s) 1225
BamHI GGATCC 1 cut(s) 145
BanII GRGCYC 1 cut(s) 332
BauI CACGAG 1 cut(s) 558
BbrPI CACGTG 1 cut(s) 1526
BbsI GAAGAC 4 cut(s) 102, 117, 123, 422
Bbv12I GWGCWC 2 cut(s) 332, 859
BbvI GCAGC 8 cut(s) 254, 831, 1114, 1117, 1360, 1590, 1593, 1827
BccI CCATC 2 cut(s) 82, 359
BceAI ACGGC 3 cut(s) 236, 289, 321
BclI TGATCA 1 cut(s) 412
BcoDI GTCTC 2 cut(s) 1358, 1817
BcuI ACTAGT 1 cut(s) 1711
BfaI CTAG 6 cut(s) 476, 689, 990, 1061, 1443, 1712
BfmI CTRYAG 2 cut(s) 41, 846
BfoI RGCGCY 1 cut(s) 1753
BfrI CTTAAG 1 cut(s) 1801
BglI GCCNNNNNGGC 1 cut(s) 258
BglII AGATCT 1 cut(s) 37
BlnI CCTAGG 1 cut(s) 1060
Bme18I GGWCC 4 cut(s) 179, 750, 1012, 1393
BmgBI CACGTC 1 cut(s) 555
BmgT120I GGNCC 6 cut(s) 179, 750, 1012, 1229, 1382, 1393
BmiI GGNNCC 8 cut(s) 147, 180, 181, 751, 1013, 1383, 1395, 1552
BmrI ACTGGG 1 cut(s) 756
BmsI GCATC 8 cut(s) 31, 232, 471, 734, 818, 865, 1343, 1694
BmuI ACTGGG 1 cut(s) 756
BoxI GACNNNNGTC 1 cut(s) 1017
BpiI GAAGAC 4 cut(s) 102, 117, 123, 422
BpuEI CTTGAG 1 cut(s) 626
BsaAI YACGTR 1 cut(s) 1526
BsaBI GATNNNNATC 3 cut(s) 36, 769, 1609
BsaHI GRCGYC 1 cut(s) 135
BsaI GGTCTC 1 cut(s) 1817
BsaJI CCNNGG 3 cut(s) 253, 1060, 1411
BsaWI WCCGGW 1 cut(s) 320
Bsc4I CCNNNNNNNGG 2 cut(s) 851, 1248
Bse118I RCCGGY 1 cut(s) 1123
Bse1I ACTGG 2 cut(s) 751, 1315
Bse21I CCTNAGG 1 cut(s) 1225
Bse3DI GCAATG 1 cut(s) 520
Bse8I GATNNNNATC 3 cut(s) 36, 769, 1609
BseDI CCNNGG 3 cut(s) 253, 1060, 1411
BseGI GGATG 4 cut(s) 58, 74, 1610, 1786
BseJI GATNNNNATC 3 cut(s) 36, 769, 1609
BseLI CCNNNNNNNGG 2 cut(s) 851, 1248
BseMI GCAATG 1 cut(s) 520
BseMII CTCAG 6 cut(s) 78, 114, 239, 1096, 1239, 1831
BseNI ACTGG 2 cut(s) 751, 1315
BseRI GAGGAG 2 cut(s) 298, 1805
BseXI GCAGC 8 cut(s) 254, 831, 1114, 1117, 1360, 1590, 1593, 1827
BseYI CCCAGC 1 cut(s) 914
Bsh1236I CGCG 2 cut(s) 255, 904
BshFI GGCC 5 cut(s) 194, 369, 480, 1231, 1384
BsiHKAI GWGCWC 2 cut(s) 332, 859
BsiSI CCGG 3 cut(s) 321, 1124, 1614
BslFI GGGAC 5 cut(s) 192, 690, 763, 1025, 1379
BslI CCNNNNNNNGG 2 cut(s) 851, 1248
BsmAI GTCTC 2 cut(s) 1358, 1817
BsmFI GGGAC 5 cut(s) 192, 690, 763, 1025, 1379
BsmI GAATGC 1 cut(s) 1279
BsnI GGCC 5 cut(s) 194, 369, 480, 1231, 1384
Bso31I GGTCTC 1 cut(s) 1817
Bsp1286I GDGCHC 2 cut(s) 332, 859
Bsp143I GATC 6 cut(s) 37, 145, 412, 731, 1150, 1604
Bsp68I TCGCGA 1 cut(s) 904
BspACI CCGC 9 cut(s) 237, 253, 255, 258, 261, 264, 280, 308, 1332
BspANI GGCC 5 cut(s) 194, 369, 480, 1231, 1384
BspCNI CTCAG 6 cut(s) 77, 113, 240, 1095, 1238, 1830
BspFNI CGCG 2 cut(s) 255, 904
BspHI TCATGA 2 cut(s) 187, 1865
BspLI GGNNCC 8 cut(s) 147, 180, 181, 751, 1013, 1383, 1395, 1552
BspPI GGATC 5 cut(s) 140, 153, 739, 1158, 1612
BspQI GCTCTTC 3 cut(s) 120, 1308, 1716
BspTI CTTAAG 1 cut(s) 1801
BspTNI GGTCTC 1 cut(s) 1817
BsrDI GCAATG 1 cut(s) 520
BsrFI RCCGGY 1 cut(s) 1123
BsrI ACTGG 2 cut(s) 751, 1315
BssAI RCCGGY 1 cut(s) 1123
BssECI CCNNGG 3 cut(s) 253, 1060, 1411
BssMI GATC 6 cut(s) 37, 145, 412, 731, 1150, 1604
BssNI GRCGYC 1 cut(s) 135
BssSI CACGAG 1 cut(s) 558
BssT1I CCWWGG 2 cut(s) 1060, 1411
Bst2BI CACGAG 1 cut(s) 558
Bst4CI ACNGT 5 cut(s) 410, 1276, 1324, 1546, 1744
Bst6I CTCTTC 5 cut(s) 42, 120, 1308, 1716, 1853
BstACI GRCGYC 1 cut(s) 135
BstAFI CTTAAG 1 cut(s) 1801
BstAPI GCANNNNNTGC 1 cut(s) 1052
BstBAI YACGTR 1 cut(s) 1526
BstC8I GCNNGC 6 cut(s) 241, 278, 639, 912, 1057, 1576
BstDEI CTNAG 6 cut(s) 64, 100, 248, 1082, 1225, 1817
BstDSI CCRYGG 1 cut(s) 253
BstF5I GGATG 4 cut(s) 58, 74, 1610, 1786
BstFNI CGCG 2 cut(s) 255, 904
BstH2I RGCGCY 1 cut(s) 1753
BstHHI GCGC 2 cut(s) 1218, 1752
BstKTI GATC 6 cut(s) 40, 148, 415, 734, 1153, 1607
BstMAI GTCTC 2 cut(s) 1358, 1817
BstMBI GATC 6 cut(s) 37, 145, 412, 731, 1150, 1604
BstNSI RCATGY 4 cut(s) 686, 914, 1143, 1216
BstPAI GACNNNNGTC 1 cut(s) 1017
BstSFI CTRYAG 2 cut(s) 41, 846
BstUI CGCG 2 cut(s) 255, 904
BstV1I GCAGC 8 cut(s) 254, 831, 1114, 1117, 1360, 1590, 1593, 1827
BstV2I GAAGAC 4 cut(s) 102, 117, 123, 422
BstX2I RGATCY 4 cut(s) 37, 145, 1150, 1604
BstYI RGATCY 4 cut(s) 37, 145, 1150, 1604
Bsu36I CCTNAGG 1 cut(s) 1225
BsuRI GGCC 5 cut(s) 194, 369, 480, 1231, 1384
BtgI CCRYGG 1 cut(s) 253
BtrI CACGTC 1 cut(s) 555
BtsCI GGATG 4 cut(s) 58, 74, 1610, 1786
BtsIMutI CAGTG 3 cut(s) 350, 1308, 1329
BtuMI TCGCGA 1 cut(s) 904
Cac8I GCNNGC 6 cut(s) 241, 278, 639, 912, 1057, 1576
CaiI CAGNNNCTG 1 cut(s) 1232
CciI TCATGA 2 cut(s) 187, 1865
CfoI GCGC 2 cut(s) 1218, 1752
Cfr10I RCCGGY 1 cut(s) 1123
Cfr13I GGNCC 6 cut(s) 179, 750, 1012, 1229, 1382, 1393
Cfr42I CCGCGG 1 cut(s) 256
CseI GACGC 2 cut(s) 143, 867
Csp6I GTAC 5 cut(s) 686, 1086, 1121, 1789, 1854
CviAII CATG 8 cut(s) 188, 683, 911, 1140, 1146, 1213, 1556, 1866
CviQI GTAC 5 cut(s) 686, 1086, 1121, 1789, 1854
DdeI CTNAG 6 cut(s) 64, 100, 248, 1082, 1225, 1817
DpnI GATC 6 cut(s) 39, 147, 414, 733, 1152, 1606
DpnII GATC 6 cut(s) 37, 145, 412, 731, 1150, 1604
DraI TTTAAA 2 cut(s) 999, 1566
DraIII CACNNNGTG 1 cut(s) 19
Eam1104I CTCTTC 5 cut(s) 42, 120, 1308, 1716, 1853
EarI CTCTTC 5 cut(s) 42, 120, 1308, 1716, 1853
Ecl136II GAGCTC 1 cut(s) 330
Eco130I CCWWGG 2 cut(s) 1060, 1411
Eco24I GRGCYC 1 cut(s) 332
Eco31I GGTCTC 1 cut(s) 1817
Eco32I GATATC 1 cut(s) 1630
Eco47I GGWCC 4 cut(s) 179, 750, 1012, 1393
Eco53kI GAGCTC 1 cut(s) 330
Eco57I CTGAAG 3 cut(s) 1265, 1710, 1834
Eco72I CACGTG 1 cut(s) 1526
Eco81I CCTNAGG 1 cut(s) 1225
EcoICRI GAGCTC 1 cut(s) 330
EcoO109I RGGNCCY 4 cut(s) 179, 750, 1012, 1229
EcoRV GATATC 1 cut(s) 1630
EcoT14I CCWWGG 2 cut(s) 1060, 1411
EcoT38I GRGCYC 1 cut(s) 332
ErhI CCWWGG 2 cut(s) 1060, 1411
FaeI CATG 8 cut(s) 191, 686, 914, 1143, 1149, 1216, 1559, 1869
FalI AAGNNNNNCTT 2 cut(s) 921, 953
FaqI GGGAC 5 cut(s) 192, 690, 763, 1025, 1379
FatI CATG 8 cut(s) 187, 682, 910, 1139, 1145, 1212, 1555, 1865
FauNDI CATATG 1 cut(s) 964
FbaI TGATCA 1 cut(s) 412
FokI GGATG 4 cut(s) 61, 65, 1597, 1793
FriOI GRGCYC 1 cut(s) 332
FspBI CTAG 6 cut(s) 476, 689, 990, 1061, 1443, 1712
GlaI GCGC 2 cut(s) 1217, 1751
GsaI CCCAGC 1 cut(s) 918
HaeII RGCGCY 1 cut(s) 1753
HaeIII GGCC 5 cut(s) 194, 369, 480, 1231, 1384
HapII CCGG 3 cut(s) 321, 1124, 1614
HgaI GACGC 2 cut(s) 143, 867
HhaI GCGC 2 cut(s) 1218, 1752
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 8 cut(s) 191, 686, 914, 1143, 1149, 1216, 1559, 1869
Hin6I GCGC 2 cut(s) 1216, 1750
HinP1I GCGC 2 cut(s) 1216, 1750
HincII GTYRAC 1 cut(s) 574
HindII GTYRAC 1 cut(s) 574
HindIII AAGCTT 2 cut(s) 545, 1859
HinfI GANTC 9 cut(s) 98, 206, 288, 349, 581, 595, 765, 1160, 1238
HpaII CCGG 3 cut(s) 321, 1124, 1614
HphI GGTGA 1 cut(s) 422
Hpy166II GTNNAC 5 cut(s) 440, 574, 602, 803, 1791
Hpy188III TCNNGA 9 cut(s) 26, 171, 188, 558, 729, 903, 1357, 1778, 1866
Hpy8I GTNNAC 5 cut(s) 440, 574, 602, 803, 1791
Hpy99I CGWCG 2 cut(s) 92, 275
HpyAV CCTTC 7 cut(s) 288, 625, 829, 900, 1038, 1240, 1530
HpyCH4III ACNGT 5 cut(s) 410, 1276, 1324, 1546, 1744
HpyCH4IV ACGT 7 cut(s) 90, 554, 870, 1018, 1119, 1525, 1620
HpyF3I CTNAG 6 cut(s) 64, 100, 248, 1082, 1225, 1817
HpySE526I ACGT 7 cut(s) 90, 554, 870, 1018, 1119, 1525, 1620
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 8 cut(s) 191, 686, 914, 1143, 1149, 1216, 1559, 1869
HspAI GCGC 2 cut(s) 1216, 1750
KflI GGGWCCC 1 cut(s) 179
Ksp22I TGATCA 1 cut(s) 412
KspI CCGCGG 1 cut(s) 256
Kzo9I GATC 6 cut(s) 37, 145, 412, 731, 1150, 1604
LguI GCTCTTC 3 cut(s) 120, 1308, 1716
LmnI GCTCC 2 cut(s) 335, 634
Lsp1109I GCAGC 8 cut(s) 254, 831, 1114, 1117, 1360, 1590, 1593, 1827
LweI GCATC 8 cut(s) 31, 232, 471, 734, 818, 865, 1343, 1694
MaeI CTAG 6 cut(s) 476, 689, 990, 1061, 1443, 1712
MaeII ACGT 7 cut(s) 90, 554, 870, 1018, 1119, 1525, 1620
MaeIII GTNAC 3 cut(s) 555, 840, 1832
MalI GATC 6 cut(s) 39, 147, 414, 733, 1152, 1606
MboI GATC 6 cut(s) 37, 145, 412, 731, 1150, 1604
MfeI CAATTG 1 cut(s) 1341
MflI RGATCY 4 cut(s) 37, 145, 1150, 1604
MhlI GDGCHC 2 cut(s) 332, 859
MlyI GAGTC 2 cut(s) 92, 200
MroXI GAANNNNTTC 1 cut(s) 548
MseI TTAA 5 cut(s) 896, 998, 1565, 1755, 1802
MslI CAYNNNNRTG 1 cut(s) 1144
MspA1I CMGCKG 1 cut(s) 255
MspCI CTTAAG 1 cut(s) 1801
MspI CCGG 3 cut(s) 321, 1124, 1614
MunI CAATTG 1 cut(s) 1341
Mva1269I GAATGC 1 cut(s) 1279
MvnI CGCG 2 cut(s) 255, 904
NdeI CATATG 1 cut(s) 964
NdeII GATC 6 cut(s) 37, 145, 412, 731, 1150, 1604
NlaIII CATG 8 cut(s) 191, 686, 914, 1143, 1149, 1216, 1559, 1869
NlaIV GGNNCC 8 cut(s) 147, 180, 181, 751, 1013, 1383, 1395, 1552
NmuCI GTSAC 1 cut(s) 555
NruI TCGCGA 1 cut(s) 904
NspI RCATGY 4 cut(s) 686, 914, 1143, 1216
PaeI GCATGC 1 cut(s) 914
PagI TCATGA 2 cut(s) 187, 1865
PciSI GCTCTTC 3 cut(s) 120, 1308, 1716
PctI GAATGC 1 cut(s) 1279
PdmI GAANNNNTTC 1 cut(s) 548
PfeI GAWTC 7 cut(s) 288, 349, 581, 595, 765, 1160, 1238
PleI GAGTC 2 cut(s) 92, 200
PmaCI CACGTG 1 cut(s) 1526
PmlI CACGTG 1 cut(s) 1526
PpsI GAGTC 2 cut(s) 92, 200
Ppu21I YACGTR 1 cut(s) 1526
PpuMI RGGWCCY 3 cut(s) 179, 750, 1012
PshAI GACNNNNGTC 1 cut(s) 1017
Psp124BI GAGCTC 1 cut(s) 332
Psp5II RGGWCCY 3 cut(s) 179, 750, 1012
PspCI CACGTG 1 cut(s) 1526
PspFI CCCAGC 1 cut(s) 914
PspN4I GGNNCC 8 cut(s) 147, 180, 181, 751, 1013, 1383, 1395, 1552
PspPI GGNCC 6 cut(s) 179, 750, 1012, 1229, 1382, 1393
PspPPI RGGWCCY 3 cut(s) 179, 750, 1012
PstNI CAGNNNCTG 1 cut(s) 1232
PsuI RGATCY 4 cut(s) 37, 145, 1150, 1604
RruI TCGCGA 1 cut(s) 904
RsaI GTAC 5 cut(s) 687, 1087, 1122, 1790, 1855
RsaNI GTAC 5 cut(s) 686, 1086, 1121, 1789, 1854
RseI CAYNNNNRTG 1 cut(s) 1144
SacI GAGCTC 1 cut(s) 332
SacII CCGCGG 1 cut(s) 256
SapI GCTCTTC 3 cut(s) 120, 1308, 1716
SaqAI TTAA 5 cut(s) 896, 998, 1565, 1755, 1802
Sau3AI GATC 6 cut(s) 37, 145, 412, 731, 1150, 1604
Sau96I GGNCC 6 cut(s) 179, 750, 1012, 1229, 1382, 1393
SchI GAGTC 2 cut(s) 92, 200
SduI GDGCHC 2 cut(s) 332, 859
SfaNI GCATC 8 cut(s) 31, 232, 471, 734, 818, 865, 1343, 1694
SfcI CTRYAG 2 cut(s) 41, 846
Sfr303I CCGCGG 1 cut(s) 256
SgrBI CCGCGG 1 cut(s) 256
SinI GGWCC 4 cut(s) 179, 750, 1012, 1393
SmiMI CAYNNNNRTG 1 cut(s) 1144
SmlI CTYRAG 2 cut(s) 605, 1801
SmoI CTYRAG 2 cut(s) 605, 1801
SpeI ACTAGT 1 cut(s) 1711
SphI GCATGC 1 cut(s) 914
SsiI CCGC 9 cut(s) 237, 253, 255, 258, 261, 264, 280, 308, 1332
SspMI CTAG 6 cut(s) 476, 689, 990, 1061, 1443, 1712
SstI GAGCTC 1 cut(s) 332
StyI CCWWGG 2 cut(s) 1060, 1411
TaaI ACNGT 5 cut(s) 410, 1276, 1324, 1546, 1744
TaiI ACGT 7 cut(s) 93, 557, 873, 1021, 1122, 1528, 1623
TaqI TCGA 3 cut(s) 465, 703, 1482
TatI WGTACW 2 cut(s) 685, 1788
TauI GCSGC 6 cut(s) 255, 258, 261, 264, 267, 311
TfiI GAWTC 7 cut(s) 288, 349, 581, 595, 765, 1160, 1238
Tru1I TTAA 5 cut(s) 896, 998, 1565, 1755, 1802
Tru9I TTAA 5 cut(s) 896, 998, 1565, 1755, 1802
TscAI CASTG 3 cut(s) 350, 1315, 1329
TseFI GTSAC 1 cut(s) 555
TseI GCWGC 8 cut(s) 267, 819, 1127, 1130, 1373, 1578, 1581, 1840
Tsp45I GTSAC 1 cut(s) 555
TspDTI ATGAA 5 cut(s) 69, 1259, 1278, 1599, 1854
TspGWI ACGGA 3 cut(s) 67, 158, 1103
TspRI CASTG 3 cut(s) 350, 1315, 1329
Vha464I CTTAAG 1 cut(s) 1801
VpaK11BI GGWCC 4 cut(s) 179, 750, 1012, 1393
XapI RAATTY 4 cut(s) 699, 888, 1000, 1360
XceI RCATGY 4 cut(s) 686, 914, 1143, 1216
XmaJI CCTAGG 1 cut(s) 1060
XmnI GAANNNNTTC 1 cut(s) 548
XspI CTAG 6 cut(s) 476, 689, 990, 1061, 1443, 1712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.