RLG00000024263

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0011045
Physical Location & Seq
Forward (+)
33671924 .. 33676831
4908 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024263

Sequence Viewer

Length: 1851 bp
ATGGCACACCCTCACTATGTCCACATTCACGATGTAGATCTACAGGAAGAGGATGAAGAAGCCTCAGAAGAACCATCCGTCATCGGCGACGTTGAAGACTCAGAACAAGAAGACGAAGAAGAAGAACCAGAGTCCCAAACGGATCCCAATTATGCTCTCCATCTTTCCAGAATGGGACCCACTCATGAGGCCGAAGAAGCCGACTCGGATTTTGATCGGCATCTGGTCAGAACCGCTTGCTTTCTGAGCGGCGACGGCAAGCGGAGAAGAATCGGAAGCCAGGAAACGGCGGCGTTTGACACCGGAGAGAGCTCTCAGAGCAGTCAGTGGAATCCGAATGAAATTGATGGCCTGTTTTGCCCAATTTGCTTGGAGGCTTGGACTAATGACGGTGATCACTACATCTGCTGTCTTCCTTGTGGACACATTTTCGGTATGTCCTGCATCGAAAAATGGCTAGGCCAGAGTAAAAGACAGGGAAAGTGTCCTCAATGCAATGCCAAATGCAAGTTGAATGATGTCAGGAAACTTTTCACGTCACGAGTTATTTCTGTTGACGAAGAATCACAAAAGAGGATTCGTTCACTTGAGGCTAAATGTGCTTCTTTTGAGAAGGAGCGAGCAGAATGGCATATGAGGGAAGCAGAATTGTTAAAGGGACAGTGTGTACTAGAATGCAAAATTCAACAACTTATGGAGAGCAAAGCATCAGGATTAATCAATCCTACTGGGGCCTTTGAAAGGAGATTTGTATCTGGGCTAACATTTGGCTCTAATACCTGTGGACAAGCATCTCCTTGCAGCTTCAAATTAGAGAAGGAATTGCCTGTAGCTGGTGCTCATTTGTTTGACGTTGATGCATCTAACCAAATTTTGTTAATTTCGCGAAGGCAAGCTGGGATAGGTGGAAAAGATGTGCTTACCAAAATGAGCCTGATACCTCCATATGACAGAGATGACATTCTTCTTCCTAGCTCTTTAAATTCTATCAGGGACCTACGTCTTTCTCCTTCTAACACTAACCTTGCACTCTTTGCTTGCCTAGGGAAGAAATTGGCAGTTCTCAGTATGGAGAACAACAACGTCATTGTTTCCTATGACCTACCGGCTGCTGCTTGGACATGCTCATGGGATCTCAACGATTCAAATTATATATATGCTGGATTACAGAATGGCTATCTTCTGGTGTTTGACATGCGCCAAACCTCAGGGCCTGTTGAATCCCTGAAGGGGCTGACAAGCAACCCAATTCATACTGTGCATTCCCTTTCATATAATTCAGCTCTTCCCACTGGTGTTAGAACAGTGATATCCGCATCGTCAATTGGCTTATGTCTCTGGAATTTTGGTGGTGCTGCAAAGGGGCCAATTTTGGTCCCTGAAACAGAGAACCAAGGAGTTTGTATATCTCTTGCATATTGCCCTAGAACAGATGACATTGTTGCTTCCTATCGCCCCAAAGTCGAGTTTTCTGATGAGGCAGTTCTTACACAACTAACTCCTTCACGTGCCATCGGACAAGGAACAGTCGGTTCCCATGTTCTTTTAAAGAGAGCAGGCAGCAGCAGTCATTTTCTAAAGTTGGGATCTTCATCCGGCAACGTGTGTGATATCGGACTGCCAAAATCTGCAATTATCAACATAGAAAATTGTGGCAGTTTGTTTGCATCTGAAGATAAACTATCTTCTGAACTAGTTTTAGAAGAGCTGTCGTCTTTTACTACTGTTCAGCGCCTTAACTTACAGCGAAGTCCTGTTCAGGATGTGAAGTACACATCTTTCTTAAGGAAAGGTCTCCTCAGTTGTTTGAATGGTAACACGCTGCAACTCTTCAGTACCAAGCTTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0000724 GO:0000725 GO:0002039 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0010564 GO:0010948 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022402 GO:0031297 GO:0031570 GO:0031571 GO:0031974 GO:0031981 GO:0032446 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045005 GO:0045786 GO:0045930 GO:0046483 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080134 GO:0080135 GO:0090304 GO:0090734 GO:0097371 GO:0140096 GO:1901360 GO:1901564 GO:1901576 GO:1901976 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902806 GO:1902807 GO:1903047 GO:2000001 GO:2000045 GO:2000134 GO:2001020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

617

Amino Acids

67.62

Weight (kDa)

5.2

Isoelectric Point (pI)

56.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 120 - 166 1.4e-09 Ring finger domain
zf-RING_UBOX PF13445 120 - 163 4.3e-06 RING-type zinc-finger
WD40_RFWD3 PF23419 328 - 611 7.4e-32 E3 ubiquitin-protein ligase RFWD3 WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011045)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03450 AT5G03750
fragaria_vesca FvH4_6g16560 FvH4_6g16560
malus_domestica MD12G1109200.v1.1
prunus_persica Prupe.7G127800_v2.0.a1
pyrus_communis pycom12g10940
rosa_chinensis RchiOBHm_Chr3g0470481
rosa_laevigata RLG00000024263
rosa_multiflora Rmu_sc0002115.1_g000004 Rmu_sc0003381.1_g000011
rosa_roxburghii Rroxscaffold_4G00302270 Rroxscaffold_6G00410770
rosa_rugosa Rorug03G0109400 Rorug03G0109500
rosa_samantha Rh3AG159800 Rh3BG184300 Rh3CG174800 Rh3DG190600
rosa_wichuraiana Rw3G015120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 249
AccII CGCG 1 cut(s) 886
AciI CCGC 5 cut(s) 234, 249, 262, 290, 1314
AclWI GGATC 4 cut(s) 137, 150, 1140, 1594
AcsI RAATTY 4 cut(s) 681, 870, 982, 1342
AcuI CTGAAG 3 cut(s) 1247, 1692, 1816
AcvI CACGTG 1 cut(s) 1508
AfaI GTAC 3 cut(s) 669, 1772, 1837
AfiI CCNNNNNNNGG 4 cut(s) 286, 741, 833, 1230
AflII CTTAAG 1 cut(s) 1783
AflIII ACRYGT 1 cut(s) 1602
AgsI TTSAA 8 cut(s) 95, 514, 686, 740, 808, 1146, 1220, 1810
AhlI ACTAGT 1 cut(s) 1693
AjiI CACGTC 1 cut(s) 537
AjnI CCWGG 1 cut(s) 279
AluBI AGCT 8 cut(s) 312, 804, 833, 896, 975, 1283, 1708, 1843
AluI AGCT 8 cut(s) 312, 804, 833, 896, 975, 1283, 1708, 1843
Alw21I GWGCWC 2 cut(s) 314, 841
Alw26I GTCTC 2 cut(s) 1340, 1799
AlwI GGATC 4 cut(s) 137, 150, 1140, 1594
AlwNI CAGNNNCTG 1 cut(s) 1214
AoxI GGCC 6 cut(s) 189, 349, 460, 732, 1211, 1364
ApeKI GCWGC 7 cut(s) 801, 1109, 1112, 1355, 1560, 1563, 1822
ApoI RAATTY 4 cut(s) 681, 870, 982, 1342
ArsI GACNNNNNNTTYG 2 cut(s) 194, 226
AseI ATTAAT 1 cut(s) 716
Asp700I GAANNNNTTC 1 cut(s) 530
AspA2I CCTAGG 1 cut(s) 1042
AspLEI GCGC 2 cut(s) 1200, 1734
AspS9I GGNCC 6 cut(s) 176, 732, 994, 1211, 1364, 1375
AsuHPI GGTGA 1 cut(s) 404
AvaII GGWCC 3 cut(s) 176, 994, 1375
AvrII CCTAGG 1 cut(s) 1042
AxyI CCTNAGG 1 cut(s) 1207
BamHI GGATCC 1 cut(s) 142
BanII GRGCYC 1 cut(s) 314
BauI CACGAG 1 cut(s) 540
BbrPI CACGTG 1 cut(s) 1508
BbsI GAAGAC 3 cut(s) 102, 117, 404
Bbv12I GWGCWC 2 cut(s) 314, 841
BbvI GCAGC 7 cut(s) 813, 1096, 1099, 1342, 1572, 1575, 1809
BccI CCATC 4 cut(s) 82, 168, 341, 1520
BceAI ACGGC 2 cut(s) 271, 303
BciT130I CCWGG 1 cut(s) 281
BclI TGATCA 1 cut(s) 394
BcoDI GTCTC 2 cut(s) 1340, 1799
BcuI ACTAGT 1 cut(s) 1693
BfaI CTAG 6 cut(s) 458, 671, 972, 1043, 1425, 1694
BfmI CTRYAG 2 cut(s) 41, 828
BfoI RGCGCY 1 cut(s) 1735
BfrI CTTAAG 1 cut(s) 1783
BglII AGATCT 1 cut(s) 37
BisI GCNGC 9 cut(s) 250, 291, 802, 1110, 1113, 1356, 1561, 1564, 1823
BlnI CCTAGG 1 cut(s) 1042
BlsI GCNGC 9 cut(s) 251, 292, 803, 1111, 1114, 1357, 1562, 1565, 1824
Bme1390I CCNGG 1 cut(s) 281
Bme18I GGWCC 3 cut(s) 176, 994, 1375
BmgBI CACGTC 1 cut(s) 537
BmgT120I GGNCC 6 cut(s) 176, 732, 994, 1211, 1364, 1375
BmiI GGNNCC 8 cut(s) 144, 177, 178, 733, 995, 1365, 1377, 1534
BmrFI CCNGG 1 cut(s) 281
BmrI ACTGGG 1 cut(s) 738
BmsI GCATC 8 cut(s) 229, 453, 716, 800, 847, 869, 1325, 1676
BmuI ACTGGG 1 cut(s) 738
BoxI GACNNNNGTC 1 cut(s) 999
BpiI GAAGAC 3 cut(s) 102, 117, 404
BpuEI CTTGAG 1 cut(s) 608
BsaAI YACGTR 1 cut(s) 1508
BsaBI GATNNNNATC 5 cut(s) 36, 213, 219, 751, 1591
BsaI GGTCTC 1 cut(s) 1799
BsaJI CCNNGG 2 cut(s) 1042, 1393
BsaWI WCCGGW 1 cut(s) 302
Bsc4I CCNNNNNNNGG 4 cut(s) 286, 741, 833, 1230
Bse118I RCCGGY 1 cut(s) 1105
Bse1I ACTGG 2 cut(s) 733, 1297
Bse21I CCTNAGG 1 cut(s) 1207
Bse3DI GCAATG 1 cut(s) 502
Bse8I GATNNNNATC 5 cut(s) 36, 213, 219, 751, 1591
BseBI CCWGG 1 cut(s) 281
BseDI CCNNGG 2 cut(s) 1042, 1393
BseGI GGATG 4 cut(s) 58, 74, 1592, 1768
BseJI GATNNNNATC 5 cut(s) 36, 213, 219, 751, 1591
BseLI CCNNNNNNNGG 4 cut(s) 286, 741, 833, 1230
BseMI GCAATG 1 cut(s) 502
BseMII CTCAG 7 cut(s) 78, 114, 236, 329, 1078, 1221, 1813
BseNI ACTGG 2 cut(s) 733, 1297
BseRI GAGGAG 1 cut(s) 1787
BseXI GCAGC 7 cut(s) 813, 1096, 1099, 1342, 1572, 1575, 1809
BseYI CCCAGC 1 cut(s) 896
Bsh1236I CGCG 1 cut(s) 886
BshFI GGCC 6 cut(s) 191, 351, 462, 734, 1213, 1366
BsiHKAI GWGCWC 2 cut(s) 314, 841
BsiSI CCGG 3 cut(s) 303, 1106, 1596
BslFI GGGAC 5 cut(s) 118, 189, 672, 1007, 1361
BslI CCNNNNNNNGG 4 cut(s) 286, 741, 833, 1230
BsmAI GTCTC 2 cut(s) 1340, 1799
BsmFI GGGAC 5 cut(s) 118, 189, 672, 1007, 1361
BsmI GAATGC 2 cut(s) 680, 1261
BsnI GGCC 6 cut(s) 191, 351, 462, 734, 1213, 1366
Bso31I GGTCTC 1 cut(s) 1799
Bsp1286I GDGCHC 2 cut(s) 314, 841
Bsp143I GATC 6 cut(s) 37, 142, 214, 394, 1132, 1586
Bsp68I TCGCGA 1 cut(s) 886
BspACI CCGC 5 cut(s) 234, 249, 262, 290, 1314
BspANI GGCC 6 cut(s) 191, 351, 462, 734, 1213, 1366
BspCNI CTCAG 7 cut(s) 77, 113, 237, 328, 1077, 1220, 1812
BspFNI CGCG 1 cut(s) 886
BspHI TCATGA 2 cut(s) 184, 1847
BspLI GGNNCC 8 cut(s) 144, 177, 178, 733, 995, 1365, 1377, 1534
BspPI GGATC 4 cut(s) 137, 150, 1140, 1594
BspQI GCTCTTC 2 cut(s) 1290, 1698
BspTI CTTAAG 1 cut(s) 1783
BspTNI GGTCTC 1 cut(s) 1799
BsrBI CCGCTC 1 cut(s) 249
BsrDI GCAATG 1 cut(s) 502
BsrFI RCCGGY 1 cut(s) 1105
BsrI ACTGG 2 cut(s) 733, 1297
BssAI RCCGGY 1 cut(s) 1105
BssECI CCNNGG 2 cut(s) 1042, 1393
BssMI GATC 6 cut(s) 37, 142, 214, 394, 1132, 1586
BssSI CACGAG 1 cut(s) 540
BssT1I CCWWGG 2 cut(s) 1042, 1393
Bst2BI CACGAG 1 cut(s) 540
Bst2UI CCWGG 1 cut(s) 281
Bst4CI ACNGT 6 cut(s) 392, 663, 1258, 1306, 1528, 1726
Bst6I CTCTTC 4 cut(s) 42, 1290, 1698, 1835
BstAFI CTTAAG 1 cut(s) 1783
BstAPI GCANNNNNTGC 1 cut(s) 1034
BstBAI YACGTR 1 cut(s) 1508
BstC8I GCNNGC 6 cut(s) 238, 260, 621, 894, 1039, 1558
BstDEI CTNAG 7 cut(s) 64, 100, 245, 315, 1064, 1207, 1799
BstENI CCTNNNNNAGG 1 cut(s) 739
BstF5I GGATG 4 cut(s) 58, 74, 1592, 1768
BstFNI CGCG 1 cut(s) 886
BstH2I RGCGCY 1 cut(s) 1735
BstHHI GCGC 2 cut(s) 1200, 1734
BstKTI GATC 6 cut(s) 40, 145, 217, 397, 1135, 1589
BstMAI GTCTC 2 cut(s) 1340, 1799
BstMBI GATC 6 cut(s) 37, 142, 214, 394, 1132, 1586
BstMWI GCNNNNNNNGC 8 cut(s) 197, 246, 255, 318, 357, 366, 599, 1034
BstNI CCWGG 1 cut(s) 281
BstNSI RCATGY 2 cut(s) 1125, 1198
BstPAI GACNNNNGTC 1 cut(s) 999
BstSCI CCNGG 1 cut(s) 279
BstSFI CTRYAG 2 cut(s) 41, 828
BstUI CGCG 1 cut(s) 886
BstV1I GCAGC 7 cut(s) 813, 1096, 1099, 1342, 1572, 1575, 1809
BstV2I GAAGAC 3 cut(s) 102, 117, 404
BstX2I RGATCY 4 cut(s) 37, 142, 1132, 1586
BstYI RGATCY 4 cut(s) 37, 142, 1132, 1586
Bsu36I CCTNAGG 1 cut(s) 1207
BsuRI GGCC 6 cut(s) 191, 351, 462, 734, 1213, 1366
BtrI CACGTC 1 cut(s) 537
BtsCI GGATG 4 cut(s) 58, 74, 1592, 1768
BtsIMutI CAGTG 4 cut(s) 332, 668, 1290, 1311
BtuMI TCGCGA 1 cut(s) 886
Cac8I GCNNGC 6 cut(s) 238, 260, 621, 894, 1039, 1558
CaiI CAGNNNCTG 1 cut(s) 1214
CciI TCATGA 2 cut(s) 184, 1847
CfoI GCGC 2 cut(s) 1200, 1734
Cfr10I RCCGGY 1 cut(s) 1105
Cfr13I GGNCC 6 cut(s) 176, 732, 994, 1211, 1364, 1375
Csp6I GTAC 3 cut(s) 668, 1771, 1836
CviAII CATG 6 cut(s) 185, 1122, 1128, 1195, 1538, 1848
CviQI GTAC 3 cut(s) 668, 1771, 1836
DdeI CTNAG 7 cut(s) 64, 100, 245, 315, 1064, 1207, 1799
DpnI GATC 6 cut(s) 39, 144, 216, 396, 1134, 1588
DpnII GATC 6 cut(s) 37, 142, 214, 394, 1132, 1586
DraI TTTAAA 2 cut(s) 981, 1548
Eam1104I CTCTTC 4 cut(s) 42, 1290, 1698, 1835
EarI CTCTTC 4 cut(s) 42, 1290, 1698, 1835
Ecl136II GAGCTC 1 cut(s) 312
Eco130I CCWWGG 2 cut(s) 1042, 1393
Eco24I GRGCYC 1 cut(s) 314
Eco31I GGTCTC 1 cut(s) 1799
Eco32I GATATC 2 cut(s) 1311, 1612
Eco47I GGWCC 3 cut(s) 176, 994, 1375
Eco53kI GAGCTC 1 cut(s) 312
Eco57I CTGAAG 3 cut(s) 1247, 1692, 1816
Eco72I CACGTG 1 cut(s) 1508
Eco81I CCTNAGG 1 cut(s) 1207
EcoICRI GAGCTC 1 cut(s) 312
EcoNI CCTNNNNNAGG 1 cut(s) 739
EcoO109I RGGNCCY 4 cut(s) 176, 732, 994, 1211
EcoRII CCWGG 1 cut(s) 279
EcoRV GATATC 2 cut(s) 1311, 1612
EcoT14I CCWWGG 2 cut(s) 1042, 1393
EcoT22I ATGCAT 1 cut(s) 862
EcoT38I GRGCYC 1 cut(s) 314
ErhI CCWWGG 2 cut(s) 1042, 1393
FaeI CATG 6 cut(s) 188, 1125, 1131, 1198, 1541, 1851
FalI AAGNNNNNCTT 2 cut(s) 903, 935
FaqI GGGAC 5 cut(s) 118, 189, 672, 1007, 1361
FatI CATG 6 cut(s) 184, 1121, 1127, 1194, 1537, 1847
FauNDI CATATG 2 cut(s) 633, 946
FbaI TGATCA 1 cut(s) 394
Fnu4HI GCNGC 9 cut(s) 250, 291, 802, 1110, 1113, 1356, 1561, 1564, 1823
FokI GGATG 4 cut(s) 61, 65, 1579, 1775
FriOI GRGCYC 1 cut(s) 314
Fsp4HI GCNGC 9 cut(s) 250, 291, 802, 1110, 1113, 1356, 1561, 1564, 1823
FspBI CTAG 6 cut(s) 458, 671, 972, 1043, 1425, 1694
GlaI GCGC 2 cut(s) 1199, 1733
GluI GCNGC 9 cut(s) 250, 291, 802, 1110, 1113, 1356, 1561, 1564, 1823
GsaI CCCAGC 1 cut(s) 900
HaeII RGCGCY 1 cut(s) 1735
HaeIII GGCC 6 cut(s) 191, 351, 462, 734, 1213, 1366
HapII CCGG 3 cut(s) 303, 1106, 1596
HhaI GCGC 2 cut(s) 1200, 1734
Hin1II CATG 6 cut(s) 188, 1125, 1131, 1198, 1541, 1851
Hin6I GCGC 2 cut(s) 1198, 1732
HinP1I GCGC 2 cut(s) 1198, 1732
HincII GTYRAC 1 cut(s) 556
HindII GTYRAC 1 cut(s) 556
HindIII AAGCTT 1 cut(s) 1841
HinfI GANTC 9 cut(s) 98, 131, 203, 270, 331, 563, 577, 1142, 1220
HpaII CCGG 3 cut(s) 303, 1106, 1596
HphI GGTGA 1 cut(s) 404
Hpy166II GTNNAC 7 cut(s) 22, 422, 556, 584, 668, 785, 1773
Hpy8I GTNNAC 7 cut(s) 22, 422, 556, 584, 668, 785, 1773
Hpy99I CGWCG 2 cut(s) 92, 257
HpyAV CCTTC 6 cut(s) 607, 811, 882, 1020, 1222, 1512
HpyCH4III ACNGT 6 cut(s) 392, 663, 1258, 1306, 1528, 1726
HpyCH4IV ACGT 7 cut(s) 90, 536, 852, 1000, 1083, 1507, 1602
HpyF10VI GCNNNNNNNGC 8 cut(s) 197, 246, 255, 318, 357, 366, 599, 1034
HpyF3I CTNAG 7 cut(s) 64, 100, 245, 315, 1064, 1207, 1799
HpySE526I ACGT 7 cut(s) 90, 536, 852, 1000, 1083, 1507, 1602
Hsp92II CATG 6 cut(s) 188, 1125, 1131, 1198, 1541, 1851
HspAI GCGC 2 cut(s) 1198, 1732
KflI GGGWCCC 1 cut(s) 176
Ksp22I TGATCA 1 cut(s) 394
Kzo9I GATC 6 cut(s) 37, 142, 214, 394, 1132, 1586
LguI GCTCTTC 2 cut(s) 1290, 1698
LmnI GCTCC 1 cut(s) 616
Lsp1109I GCAGC 7 cut(s) 813, 1096, 1099, 1342, 1572, 1575, 1809
LweI GCATC 8 cut(s) 229, 453, 716, 800, 847, 869, 1325, 1676
MaeI CTAG 6 cut(s) 458, 671, 972, 1043, 1425, 1694
MaeII ACGT 7 cut(s) 90, 536, 852, 1000, 1083, 1507, 1602
MaeIII GTNAC 2 cut(s) 537, 1814
MalI GATC 6 cut(s) 39, 144, 216, 396, 1134, 1588
MbiI CCGCTC 1 cut(s) 249
MboI GATC 6 cut(s) 37, 142, 214, 394, 1132, 1586
MfeI CAATTG 1 cut(s) 1323
MflI RGATCY 4 cut(s) 37, 142, 1132, 1586
MhlI GDGCHC 2 cut(s) 314, 841
MlyI GAGTC 3 cut(s) 92, 140, 197
Mph1103I ATGCAT 1 cut(s) 862
MroXI GAANNNNTTC 1 cut(s) 530
MseI TTAA 7 cut(s) 653, 716, 878, 980, 1547, 1737, 1784
MslI CAYNNNNRTG 1 cut(s) 1126
MspCI CTTAAG 1 cut(s) 1783
MspI CCGG 3 cut(s) 303, 1106, 1596
MspR9I CCNGG 1 cut(s) 281
MunI CAATTG 1 cut(s) 1323
Mva1269I GAATGC 2 cut(s) 680, 1261
MvaI CCWGG 1 cut(s) 281
MvnI CGCG 1 cut(s) 886
MwoI GCNNNNNNNGC 8 cut(s) 197, 246, 255, 318, 357, 366, 599, 1034
NdeI CATATG 2 cut(s) 633, 946
NdeII GATC 6 cut(s) 37, 142, 214, 394, 1132, 1586
NlaIII CATG 6 cut(s) 188, 1125, 1131, 1198, 1541, 1851
NlaIV GGNNCC 8 cut(s) 144, 177, 178, 733, 995, 1365, 1377, 1534
NmuCI GTSAC 1 cut(s) 537
NruI TCGCGA 1 cut(s) 886
NsiI ATGCAT 1 cut(s) 862
NspI RCATGY 2 cut(s) 1125, 1198
PagI TCATGA 2 cut(s) 184, 1847
PciSI GCTCTTC 2 cut(s) 1290, 1698
PctI GAATGC 2 cut(s) 680, 1261
PdmI GAANNNNTTC 1 cut(s) 530
PfeI GAWTC 6 cut(s) 270, 331, 563, 577, 1142, 1220
PkrI GCNGC 9 cut(s) 251, 292, 803, 1111, 1114, 1357, 1562, 1565, 1824
PleI GAGTC 3 cut(s) 92, 139, 197
PmaCI CACGTG 1 cut(s) 1508
PmlI CACGTG 1 cut(s) 1508
PpsI GAGTC 3 cut(s) 92, 139, 197
Ppu21I YACGTR 1 cut(s) 1508
PpuMI RGGWCCY 2 cut(s) 176, 994
PshAI GACNNNNGTC 1 cut(s) 999
PshBI ATTAAT 1 cut(s) 716
Psp124BI GAGCTC 1 cut(s) 314
Psp5II RGGWCCY 2 cut(s) 176, 994
Psp6I CCWGG 1 cut(s) 279
PspCI CACGTG 1 cut(s) 1508
PspFI CCCAGC 1 cut(s) 896
PspGI CCWGG 1 cut(s) 279
PspN4I GGNNCC 8 cut(s) 144, 177, 178, 733, 995, 1365, 1377, 1534
PspPI GGNCC 6 cut(s) 176, 732, 994, 1211, 1364, 1375
PspPPI RGGWCCY 2 cut(s) 176, 994
PstNI CAGNNNCTG 1 cut(s) 1214
PsuI RGATCY 4 cut(s) 37, 142, 1132, 1586
RruI TCGCGA 1 cut(s) 886
RsaI GTAC 3 cut(s) 669, 1772, 1837
RsaNI GTAC 3 cut(s) 668, 1771, 1836
RseI CAYNNNNRTG 1 cut(s) 1126
SacI GAGCTC 1 cut(s) 314
SapI GCTCTTC 2 cut(s) 1290, 1698
SaqAI TTAA 7 cut(s) 653, 716, 878, 980, 1547, 1737, 1784
SatI GCNGC 9 cut(s) 250, 291, 802, 1110, 1113, 1356, 1561, 1564, 1823
Sau3AI GATC 6 cut(s) 37, 142, 214, 394, 1132, 1586
Sau96I GGNCC 6 cut(s) 176, 732, 994, 1211, 1364, 1375
SchI GAGTC 3 cut(s) 92, 140, 197
ScrFI CCNGG 1 cut(s) 281
SduI GDGCHC 2 cut(s) 314, 841
SfaNI GCATC 8 cut(s) 229, 453, 716, 800, 847, 869, 1325, 1676
SfcI CTRYAG 2 cut(s) 41, 828
SinI GGWCC 3 cut(s) 176, 994, 1375
SmiMI CAYNNNNRTG 1 cut(s) 1126
SmlI CTYRAG 2 cut(s) 587, 1783
SmoI CTYRAG 2 cut(s) 587, 1783
SpeI ACTAGT 1 cut(s) 1693
SsiI CCGC 5 cut(s) 234, 249, 262, 290, 1314
SspMI CTAG 6 cut(s) 458, 671, 972, 1043, 1425, 1694
SstI GAGCTC 1 cut(s) 314
StyD4I CCNGG 1 cut(s) 279
StyI CCWWGG 2 cut(s) 1042, 1393
TaaI ACNGT 6 cut(s) 392, 663, 1258, 1306, 1528, 1726
TaiI ACGT 7 cut(s) 93, 539, 855, 1003, 1086, 1510, 1605
TaqI TCGA 2 cut(s) 447, 1464
TatI WGTACW 2 cut(s) 667, 1770
TauI GCSGC 2 cut(s) 252, 293
TfiI GAWTC 6 cut(s) 270, 331, 563, 577, 1142, 1220
Tru1I TTAA 7 cut(s) 653, 716, 878, 980, 1547, 1737, 1784
Tru9I TTAA 7 cut(s) 653, 716, 878, 980, 1547, 1737, 1784
TscAI CASTG 4 cut(s) 332, 668, 1297, 1311
TseFI GTSAC 1 cut(s) 537
TseI GCWGC 7 cut(s) 801, 1109, 1112, 1355, 1560, 1563, 1822
Tsp45I GTSAC 1 cut(s) 537
TspDTI ATGAA 6 cut(s) 69, 354, 1241, 1260, 1581, 1836
TspGWI ACGGA 2 cut(s) 67, 155
TspRI CASTG 4 cut(s) 332, 668, 1297, 1311
Vha464I CTTAAG 1 cut(s) 1783
VpaK11BI GGWCC 3 cut(s) 176, 994, 1375
VspI ATTAAT 1 cut(s) 716
XagI CCTNNNNNAGG 1 cut(s) 739
XapI RAATTY 4 cut(s) 681, 870, 982, 1342
XceI RCATGY 2 cut(s) 1125, 1198
XmaJI CCTAGG 1 cut(s) 1042
XmnI GAANNNNTTC 1 cut(s) 530
XspI CTAG 6 cut(s) 458, 671, 972, 1043, 1425, 1694
Zsp2I ATGCAT 1 cut(s) 862
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.