Lignin degradation and detoxification of lignin-derived products
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g12610 FvH4_2g12610 FvH4_2g21650 |
| malus_domestica | MD00G1014800.v1.1 MD00G1190700.v1.1 MD02G1264400.v1.1 MD10G1042600.v1.1 |
| prunus_persica | Prupe.8G047100_v2.0.a1 Prupe.8G047200_v2.0.a1 Prupe.8G047300_v2.0.a1 Prupe.8G047500_v2.0.a1 Prupe.8G047500_v2.0.a1 Prupe.8G047900_v2.0.a1 Prupe.8G048100_v2.0.a1 |
| pyrus_communis | pycom05g02900 pycom10g02970 |
| rosa_chinensis | RchiOBHm_Chr6g0273201 RchiOBHm_Chr6g0288321 |
| rosa_laevigata | RLG00000012414 RLG00000013632 RLG00000013639 |
| rosa_multiflora | Rmu_sc0000239.1_g000090 |
| rosa_roxburghii | Rroxscaffold_7G00180140 Rroxscaffold_7G00195550 |
| rosa_rugosa | Rorug06G0073100 Rorug06G0195600 |
| rosa_samantha | Rh6BG192200 Rh6BG312600 Rh6CG191600 Rh6CG320400 Rh6DG183000 Rh6DG305600 |
| rosa_wichuraiana | Rw6G016390 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1660 |
| Acc36I | ACCTGC | 1 cut(s) | 1660 |
| AccB1I | GGYRCC | 1 cut(s) | 404 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 234, 790, 1505 |
| AccIII | TCCGGA | 1 cut(s) | 171 |
| AciI | CCGC | 1 cut(s) | 1362 |
| AclI | AACGTT | 1 cut(s) | 549 |
| AclWI | GGATC | 4 cut(s) | 477, 490, 536, 1463 |
| AcoI | YGGCCR | 1 cut(s) | 1593 |
| AcsI | RAATTY | 3 cut(s) | 97, 1083, 1426 |
| AcuI | CTGAAG | 2 cut(s) | 366, 1497 |
| AcvI | CACGTG | 1 cut(s) | 389 |
| AfaI | GTAC | 4 cut(s) | 491, 1497, 1602, 1672 |
| AgsI | TTSAA | 5 cut(s) | 305, 518, 676, 902, 1246 |
| AjnI | CCWGG | 5 cut(s) | 485, 580, 778, 935, 1540 |
| AluBI | AGCT | 6 cut(s) | 425, 725, 839, 1137, 1217, 1398 |
| AluI | AGCT | 6 cut(s) | 425, 725, 839, 1137, 1217, 1398 |
| Alw26I | GTCTC | 1 cut(s) | 227 |
| AlwI | GGATC | 4 cut(s) | 477, 490, 536, 1463 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1652 |
| Ama87I | CYCGRG | 1 cut(s) | 278 |
| Aor13HI | TCCGGA | 1 cut(s) | 171 |
| AoxI | GGCC | 5 cut(s) | 155, 781, 1109, 1443, 1593 |
| ApeKI | GCWGC | 4 cut(s) | 734, 912, 971, 1130 |
| ApoI | RAATTY | 3 cut(s) | 97, 1083, 1426 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 173, 205, 1444, 1476 |
| AseI | ATTAAT | 1 cut(s) | 1200 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 513, 1417 |
| AspLEI | GCGC | 1 cut(s) | 1644 |
| AspS9I | GGNCC | 5 cut(s) | 155, 275, 1109, 1347, 1444 |
| AsuC2I | CCSGG | 2 cut(s) | 153, 1192 |
| AsuHPI | GGTGA | 3 cut(s) | 217, 1312, 1331 |
| AvaI | CYCGRG | 1 cut(s) | 278 |
| AvaII | GGWCC | 2 cut(s) | 275, 1347 |
| BalI | TGGCCA | 1 cut(s) | 1595 |
| BamHI | GGATCC | 1 cut(s) | 482 |
| BanI | GGYRCC | 1 cut(s) | 404 |
| BbrPI | CACGTG | 1 cut(s) | 389 |
| BbvI | GCAGC | 4 cut(s) | 721, 924, 958, 1117 |
| BceAI | ACGGC | 2 cut(s) | 925, 984 |
| BciT130I | CCWGG | 5 cut(s) | 487, 582, 780, 937, 1542 |
| BcnI | CCSGG | 2 cut(s) | 153, 1192 |
| BcoDI | GTCTC | 1 cut(s) | 227 |
| BfaI | CTAG | 1 cut(s) | 479 |
| BfuAI | ACCTGC | 1 cut(s) | 1660 |
| BisI | GCNGC | 5 cut(s) | 735, 913, 972, 1131, 1362 |
| BlsI | GCNGC | 5 cut(s) | 736, 914, 973, 1132, 1363 |
| Bme1390I | CCNGG | 7 cut(s) | 153, 487, 582, 780, 937, 1192, 1542 |
| Bme18I | GGWCC | 2 cut(s) | 275, 1347 |
| BmeT110I | CYCGRG | 1 cut(s) | 278 |
| BmgT120I | GGNCC | 5 cut(s) | 155, 275, 1109, 1347, 1444 |
| BmiI | GGNNCC | 6 cut(s) | 156, 277, 406, 484, 1348, 1446 |
| BmrFI | CCNGG | 7 cut(s) | 153, 487, 582, 780, 937, 1192, 1542 |
| BmsI | GCATC | 4 cut(s) | 547, 721, 1368, 1390 |
| BpmI | CTGGAG | 2 cut(s) | 762, 1563 |
| BpuEI | CTTGAG | 1 cut(s) | 711 |
| BpuMI | CCSGG | 2 cut(s) | 153, 1192 |
| BsaAI | YACGTR | 1 cut(s) | 389 |
| BsaI | GGTCTC | 1 cut(s) | 227 |
| BsaJI | CCNNGG | 8 cut(s) | 152, 208, 263, 789, 935, 936, 1191, 1387 |
| BsaWI | WCCGGW | 1 cut(s) | 171 |
| Bse1I | ACTGG | 3 cut(s) | 477, 1420, 1581 |
| Bse3DI | GCAATG | 1 cut(s) | 696 |
| BseAI | TCCGGA | 1 cut(s) | 171 |
| BseBI | CCWGG | 5 cut(s) | 487, 582, 780, 937, 1542 |
| BseDI | CCNNGG | 8 cut(s) | 152, 208, 263, 789, 935, 936, 1191, 1387 |
| BseGI | GGATG | 4 cut(s) | 868, 1163, 1311, 1514 |
| BseMI | GCAATG | 1 cut(s) | 696 |
| BseMII | CTCAG | 2 cut(s) | 1227, 1356 |
| BseNI | ACTGG | 3 cut(s) | 477, 1420, 1581 |
| BseXI | GCAGC | 4 cut(s) | 721, 924, 958, 1117 |
| BseYI | CCCAGC | 2 cut(s) | 821, 1645 |
| BshFI | GGCC | 5 cut(s) | 157, 783, 1111, 1445, 1595 |
| BshNI | GGYRCC | 1 cut(s) | 404 |
| BsiHKCI | CYCGRG | 1 cut(s) | 278 |
| BsiSI | CCGG | 3 cut(s) | 152, 172, 1191 |
| BslFI | GGGAC | 6 cut(s) | 157, 194, 1016, 1074, 1306, 1360 |
| BsmAI | GTCTC | 1 cut(s) | 227 |
| BsmFI | GGGAC | 6 cut(s) | 157, 194, 1016, 1074, 1306, 1360 |
| BsnI | GGCC | 5 cut(s) | 157, 783, 1111, 1445, 1595 |
| Bso31I | GGTCTC | 1 cut(s) | 227 |
| BsoBI | CYCGRG | 1 cut(s) | 278 |
| Bsp13I | TCCGGA | 1 cut(s) | 171 |
| Bsp143I | GATC | 3 cut(s) | 482, 541, 1468 |
| Bsp19I | CCATGG | 3 cut(s) | 263, 789, 1387 |
| BspACI | CCGC | 1 cut(s) | 1362 |
| BspANI | GGCC | 5 cut(s) | 157, 783, 1111, 1445, 1595 |
| BspCNI | CTCAG | 2 cut(s) | 1226, 1357 |
| BspEI | TCCGGA | 1 cut(s) | 171 |
| BspHI | TCATGA | 1 cut(s) | 768 |
| BspLI | GGNNCC | 6 cut(s) | 156, 277, 406, 484, 1348, 1446 |
| BspMI | ACCTGC | 1 cut(s) | 1660 |
| BspPI | GGATC | 4 cut(s) | 477, 490, 536, 1463 |
| BspQI | GCTCTTC | 1 cut(s) | 1061 |
| BspT107I | GGYRCC | 1 cut(s) | 404 |
| BspTNI | GGTCTC | 1 cut(s) | 227 |
| BsrDI | GCAATG | 1 cut(s) | 696 |
| BsrI | ACTGG | 3 cut(s) | 477, 1420, 1581 |
| BssECI | CCNNGG | 8 cut(s) | 152, 208, 263, 789, 935, 936, 1191, 1387 |
| BssMI | GATC | 3 cut(s) | 482, 541, 1468 |
| BssT1I | CCWWGG | 4 cut(s) | 208, 263, 789, 1387 |
| Bst2UI | CCWGG | 5 cut(s) | 487, 582, 780, 937, 1542 |
| Bst4CI | ACNGT | 9 cut(s) | 169, 221, 397, 620, 687, 718, 1519, 1562, 1600 |
| Bst6I | CTCTTC | 1 cut(s) | 1061 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1130 |
| BstBAI | YACGTR | 1 cut(s) | 389 |
| BstC8I | GCNNGC | 6 cut(s) | 369, 1009, 1135, 1182, 1578, 1640 |
| BstDEI | CTNAG | 4 cut(s) | 13, 1213, 1365, 1449 |
| BstDSI | CCRYGG | 3 cut(s) | 263, 789, 1387 |
| BstF5I | GGATG | 4 cut(s) | 868, 1163, 1311, 1514 |
| BstHHI | GCGC | 1 cut(s) | 1644 |
| BstKTI | GATC | 3 cut(s) | 485, 544, 1471 |
| BstMAI | GTCTC | 1 cut(s) | 227 |
| BstMBI | GATC | 3 cut(s) | 482, 541, 1468 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 731, 1130 |
| BstNI | CCWGG | 5 cut(s) | 487, 582, 780, 937, 1542 |
| BstNSI | RCATGY | 2 cut(s) | 371, 1642 |
| BstSCI | CCNGG | 7 cut(s) | 151, 485, 580, 778, 935, 1190, 1540 |
| BstV1I | GCAGC | 4 cut(s) | 721, 924, 958, 1117 |
| BstX2I | RGATCY | 1 cut(s) | 482 |
| BstYI | RGATCY | 1 cut(s) | 482 |
| BsuRI | GGCC | 5 cut(s) | 157, 783, 1111, 1445, 1595 |
| BtgI | CCRYGG | 3 cut(s) | 263, 789, 1387 |
| BtsCI | GGATG | 4 cut(s) | 868, 1163, 1311, 1514 |
| BtsI | GCAGTG | 3 cut(s) | 183, 675, 888 |
| BveI | ACCTGC | 1 cut(s) | 1660 |
| Cac8I | GCNNGC | 6 cut(s) | 369, 1009, 1135, 1182, 1578, 1640 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1652 |
| CciI | TCATGA | 1 cut(s) | 768 |
| CfoI | GCGC | 1 cut(s) | 1644 |
| Cfr13I | GGNCC | 5 cut(s) | 155, 275, 1109, 1347, 1444 |
| Csp6I | GTAC | 4 cut(s) | 490, 1496, 1601, 1671 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 832, 867 |
| CviAII | CATG | 9 cut(s) | 239, 264, 368, 769, 790, 1354, 1388, 1591, 1639 |
| CviQI | GTAC | 4 cut(s) | 490, 1496, 1601, 1671 |
| DdeI | CTNAG | 4 cut(s) | 13, 1213, 1365, 1449 |
| DpnI | GATC | 3 cut(s) | 484, 543, 1470 |
| DpnII | GATC | 3 cut(s) | 482, 541, 1468 |
| EaeI | YGGCCR | 1 cut(s) | 1593 |
| Eam1104I | CTCTTC | 1 cut(s) | 1061 |
| EarI | CTCTTC | 1 cut(s) | 1061 |
| Eco130I | CCWWGG | 4 cut(s) | 208, 263, 789, 1387 |
| Eco31I | GGTCTC | 1 cut(s) | 227 |
| Eco47I | GGWCC | 2 cut(s) | 275, 1347 |
| Eco57I | CTGAAG | 2 cut(s) | 366, 1497 |
| Eco72I | CACGTG | 1 cut(s) | 389 |
| Eco88I | CYCGRG | 1 cut(s) | 278 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1444 |
| EcoRII | CCWGG | 5 cut(s) | 485, 580, 778, 935, 1540 |
| EcoT14I | CCWWGG | 4 cut(s) | 208, 263, 789, 1387 |
| EcoT22I | ATGCAT | 1 cut(s) | 1383 |
| ErhI | CCWWGG | 4 cut(s) | 208, 263, 789, 1387 |
| FaeI | CATG | 9 cut(s) | 242, 267, 371, 772, 793, 1357, 1391, 1594, 1642 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 113, 145 |
| FaqI | GGGAC | 6 cut(s) | 157, 194, 1016, 1074, 1306, 1360 |
| FatI | CATG | 9 cut(s) | 238, 263, 367, 768, 789, 1353, 1387, 1590, 1638 |
| Fnu4HI | GCNGC | 5 cut(s) | 735, 913, 972, 1131, 1362 |
| FokI | GGATG | 4 cut(s) | 875, 1150, 1318, 1521 |
| Fsp4HI | GCNGC | 5 cut(s) | 735, 913, 972, 1131, 1362 |
| FspBI | CTAG | 1 cut(s) | 479 |
| GlaI | GCGC | 1 cut(s) | 1643 |
| GluI | GCNGC | 5 cut(s) | 735, 913, 972, 1131, 1362 |
| GsaI | CCCAGC | 2 cut(s) | 825, 1649 |
| GsuI | CTGGAG | 2 cut(s) | 762, 1563 |
| HaeIII | GGCC | 5 cut(s) | 157, 783, 1111, 1445, 1595 |
| HapII | CCGG | 3 cut(s) | 152, 172, 1191 |
| HhaI | GCGC | 1 cut(s) | 1644 |
| Hin1II | CATG | 9 cut(s) | 242, 267, 371, 772, 793, 1357, 1391, 1594, 1642 |
| Hin6I | GCGC | 1 cut(s) | 1642 |
| HinP1I | GCGC | 1 cut(s) | 1642 |
| HincII | GTYRAC | 1 cut(s) | 664 |
| HindII | GTYRAC | 1 cut(s) | 664 |
| HindIII | AAGCTT | 1 cut(s) | 1135 |
| HinfI | GANTC | 4 cut(s) | 92, 817, 943, 1159 |
| HpaII | CCGG | 3 cut(s) | 152, 172, 1191 |
| HphI | GGTGA | 3 cut(s) | 217, 1312, 1331 |
| Hpy166II | GTNNAC | 5 cut(s) | 202, 664, 1210, 1483, 1496 |
| Hpy188I | TCNGA | 5 cut(s) | 87, 556, 816, 1265, 1523 |
| Hpy188III | TCNNGA | 4 cut(s) | 172, 728, 769, 950 |
| Hpy8I | GTNNAC | 5 cut(s) | 202, 664, 1210, 1483, 1496 |
| Hpy99I | CGWCG | 2 cut(s) | 962, 965 |
| HpyAV | CCTTC | 4 cut(s) | 169, 344, 571, 1291 |
| HpyCH4III | ACNGT | 9 cut(s) | 169, 221, 397, 620, 687, 718, 1519, 1562, 1600 |
| HpyCH4IV | ACGT | 6 cut(s) | 285, 388, 549, 644, 834, 1260 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 731, 1130 |
| HpyF3I | CTNAG | 4 cut(s) | 13, 1213, 1365, 1449 |
| HpySE526I | ACGT | 6 cut(s) | 285, 388, 549, 644, 834, 1260 |
| Hsp92II | CATG | 9 cut(s) | 242, 267, 371, 772, 793, 1357, 1391, 1594, 1642 |
| HspAI | GCGC | 1 cut(s) | 1642 |
| Kpn2I | TCCGGA | 1 cut(s) | 171 |
| Kzo9I | GATC | 3 cut(s) | 482, 541, 1468 |
| LguI | GCTCTTC | 1 cut(s) | 1061 |
| Lsp1109I | GCAGC | 4 cut(s) | 721, 924, 958, 1117 |
| LweI | GCATC | 4 cut(s) | 547, 721, 1368, 1390 |
| MaeI | CTAG | 1 cut(s) | 479 |
| MaeII | ACGT | 6 cut(s) | 285, 388, 549, 644, 834, 1260 |
| MaeIII | GTNAC | 4 cut(s) | 286, 384, 1156, 1609 |
| MalI | GATC | 3 cut(s) | 484, 543, 1470 |
| MboI | GATC | 3 cut(s) | 482, 541, 1468 |
| MflI | RGATCY | 1 cut(s) | 482 |
| MlsI | TGGCCA | 1 cut(s) | 1595 |
| MluCI | AATT | 7 cut(s) | 97, 1083, 1093, 1197, 1219, 1426, 1459 |
| MluNI | TGGCCA | 1 cut(s) | 1595 |
| MlyI | GAGTC | 2 cut(s) | 811, 1153 |
| MmeI | TCCRAC | 1 cut(s) | 1390 |
| MnlI | CCTC | 9 cut(s) | 491, 722, 769, 776, 934, 985, 990, 1296, 1674 |
| Mox20I | TGGCCA | 1 cut(s) | 1595 |
| Mph1103I | ATGCAT | 1 cut(s) | 1383 |
| MroI | TCCGGA | 1 cut(s) | 171 |
| MroXI | GAANNNNTTC | 2 cut(s) | 513, 1417 |
| MscI | TGGCCA | 1 cut(s) | 1595 |
| MseI | TTAA | 7 cut(s) | 131, 1037, 1139, 1200, 1311, 1527, 1675 |
| MslI | CAYNNNNRTG | 3 cut(s) | 237, 361, 1386 |
| Msp20I | TGGCCA | 1 cut(s) | 1595 |
| MspA1I | CMGCKG | 1 cut(s) | 1364 |
| MspI | CCGG | 3 cut(s) | 152, 172, 1191 |
| MspR9I | CCNGG | 7 cut(s) | 153, 487, 582, 780, 937, 1192, 1542 |
| MvaI | CCWGG | 5 cut(s) | 487, 582, 780, 937, 1542 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 731, 1130 |
| NciI | CCSGG | 2 cut(s) | 153, 1192 |
| NcoI | CCATGG | 3 cut(s) | 263, 789, 1387 |
| NdeII | GATC | 3 cut(s) | 482, 541, 1468 |
| NlaIII | CATG | 9 cut(s) | 242, 267, 371, 772, 793, 1357, 1391, 1594, 1642 |
| NlaIV | GGNNCC | 6 cut(s) | 156, 277, 406, 484, 1348, 1446 |
| NmuCI | GTSAC | 3 cut(s) | 384, 1156, 1609 |
| NsiI | ATGCAT | 1 cut(s) | 1383 |
| NspI | RCATGY | 2 cut(s) | 371, 1642 |
| PaeI | GCATGC | 2 cut(s) | 371, 1642 |
| PagI | TCATGA | 1 cut(s) | 768 |
| PaqCI | CACCTGC | 1 cut(s) | 1660 |
| PasI | CCCWGGG | 1 cut(s) | 936 |
| PciSI | GCTCTTC | 1 cut(s) | 1061 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1266 |
| PdmI | GAANNNNTTC | 2 cut(s) | 513, 1417 |
| PfeI | GAWTC | 2 cut(s) | 92, 943 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 234, 790, 1505 |
| PfoI | TCCNGGA | 1 cut(s) | 1540 |
| PkrI | GCNGC | 5 cut(s) | 736, 914, 973, 1132, 1363 |
| PleI | GAGTC | 2 cut(s) | 811, 1153 |
| PmaCI | CACGTG | 1 cut(s) | 389 |
| PmlI | CACGTG | 1 cut(s) | 389 |
| PpsI | GAGTC | 2 cut(s) | 811, 1153 |
| Ppu21I | YACGTR | 1 cut(s) | 389 |
| PshBI | ATTAAT | 1 cut(s) | 1200 |
| Psp1406I | AACGTT | 1 cut(s) | 549 |
| Psp6I | CCWGG | 5 cut(s) | 485, 580, 778, 935, 1540 |
| PspCI | CACGTG | 1 cut(s) | 389 |
| PspFI | CCCAGC | 2 cut(s) | 821, 1645 |
| PspGI | CCWGG | 5 cut(s) | 485, 580, 778, 935, 1540 |
| PspN4I | GGNNCC | 6 cut(s) | 156, 277, 406, 484, 1348, 1446 |
| PspPI | GGNCC | 5 cut(s) | 155, 275, 1109, 1347, 1444 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1652 |
| PsuI | RGATCY | 1 cut(s) | 482 |
| RsaI | GTAC | 4 cut(s) | 491, 1497, 1602, 1672 |
| RsaNI | GTAC | 4 cut(s) | 490, 1496, 1601, 1671 |
| RseI | CAYNNNNRTG | 3 cut(s) | 237, 361, 1386 |
| SapI | GCTCTTC | 1 cut(s) | 1061 |
| SaqAI | TTAA | 7 cut(s) | 131, 1037, 1139, 1200, 1311, 1527, 1675 |
| SatI | GCNGC | 5 cut(s) | 735, 913, 972, 1131, 1362 |
| Sau3AI | GATC | 3 cut(s) | 482, 541, 1468 |
| Sau96I | GGNCC | 5 cut(s) | 155, 275, 1109, 1347, 1444 |
| SchI | GAGTC | 2 cut(s) | 811, 1153 |
| ScrFI | CCNGG | 7 cut(s) | 153, 487, 582, 780, 937, 1192, 1542 |
| SfaNI | GCATC | 4 cut(s) | 547, 721, 1368, 1390 |
| SinI | GGWCC | 2 cut(s) | 275, 1347 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 237, 361, 1386 |
| SmlI | CTYRAG | 1 cut(s) | 726 |
| SmoI | CTYRAG | 1 cut(s) | 726 |
| SphI | GCATGC | 2 cut(s) | 371, 1642 |
| Sse9I | AATT | 7 cut(s) | 97, 1083, 1093, 1197, 1219, 1426, 1459 |
| SsiI | CCGC | 1 cut(s) | 1362 |
| SspMI | CTAG | 1 cut(s) | 479 |
| StyD4I | CCNGG | 7 cut(s) | 151, 485, 580, 778, 935, 1190, 1540 |
| StyI | CCWWGG | 4 cut(s) | 208, 263, 789, 1387 |
| TaaI | ACNGT | 9 cut(s) | 169, 221, 397, 620, 687, 718, 1519, 1562, 1600 |
| TaiI | ACGT | 6 cut(s) | 288, 391, 552, 647, 837, 1263 |
| TaqI | TCGA | 3 cut(s) | 95, 957, 1431 |
| TasI | AATT | 7 cut(s) | 97, 1083, 1093, 1197, 1219, 1426, 1459 |
| TatI | WGTACW | 2 cut(s) | 1600, 1670 |
| TauI | GCSGC | 1 cut(s) | 1364 |
| TfiI | GAWTC | 2 cut(s) | 92, 943 |
| Tru1I | TTAA | 7 cut(s) | 131, 1037, 1139, 1200, 1311, 1527, 1675 |
| Tru9I | TTAA | 7 cut(s) | 131, 1037, 1139, 1200, 1311, 1527, 1675 |
| TseFI | GTSAC | 3 cut(s) | 384, 1156, 1609 |
| TseI | GCWGC | 4 cut(s) | 734, 912, 971, 1130 |
| Tsp45I | GTSAC | 3 cut(s) | 384, 1156, 1609 |
| TspDTI | ATGAA | 4 cut(s) | 221, 522, 1048, 1092 |
| TspGWI | ACGGA | 4 cut(s) | 588, 644, 978, 1060 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 234, 790, 1505 |
| VpaK11BI | GGWCC | 2 cut(s) | 275, 1347 |
| VspI | ATTAAT | 1 cut(s) | 1200 |
| XapI | RAATTY | 3 cut(s) | 97, 1083, 1426 |
| XceI | RCATGY | 2 cut(s) | 371, 1642 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 261, 796, 1506, 1588 |
| XmnI | GAANNNNTTC | 2 cut(s) | 513, 1417 |
| XspI | CTAG | 1 cut(s) | 479 |
| Zsp2I | ATGCAT | 1 cut(s) | 1383 |