Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004220

Physical Location & Seq

Genomic Coordinates Forward (+)

18584607 .. 18586891

Gene Structure 2285 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012414

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGAAGGGAGCTTCAACTATACCCTTAGATTTTCAGATGAAGAAGGAACCTTATGGTGGCATGCTCATAGTGATTGGTCTCGTGCCTCCGTACACGGCGCCATCATTGTTTTGCCGCCTCCAACTAAGAAGATCATGGTTCAAATATGATAGAAACTTGACGCAACAGTATCTGGACTCCCTAATCTCGGGAGGTGATGTTGATCCAGCTGATTCTTACACAATCAACGATTTTCCTGGACAACCTGGAGCTTCTTGTGACGACATAGAAATATTGCAAGTTGATAGCGGAAAAACGTATCATCTCCGCATAATCAATGGGGTGATGGAGGAGGAAATGTTCTTTGCAATTTCCGGTCACACTGTCACACATTCACGGTTGTCGGACTCGACGTCTTCGGGTAGTTACTATATGGGTGAAAGTGCTTTTGTCCACGCCGGACGTTCTGACCCCATCGACTTGCCGGTAACAAGAGCAATTATTAATTACAGCGACTATTCTGGCTCTGTGATTCAGGATGATCTTGTTGGCCAGCTTCTTCCAACTGATAAAAAAAATTACTTACGTGTGCGCAAACTAGAAGTAGTAGTAGGTGTCTACACCGAGGATTTCCCAGCCACACCACCCAAGCCATTTGACTACAATGCAGCTGATACGGGTGATAATGAAGCAGTTCCAACTGTAGGTACGAAGGTGATGACTGTTAACTATGGAGATGCAGTTGAAATAGTTTTCCAAGGAACCAACGTTGGGAACGCAGGGAACCATCCGATGCATATTCATGGATATAACTTCTATCTGGTTGCGAATGGTTCTGGAAATTTCGGTTCTTCATTTGTAGAGTATAGGTTGGACAATCCAGCTCAAGCCAATACCTTTGGAGTGCCTAAGAATGGATGGCTCGCTGTTAGATTCCAGGCTAACAATCCTGGAGTGTGGTTTCTGCATTGCCATTTGGAAAGGCATGCTACCTGGGGTATGGCCGGAGTTCTCATCGTGAAGAATACAACTACTGACGTGGACCAGACTCTTATGGATCCCCCAGCAGGCTACCCTCCTTGTCCGCTCCTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

359

Amino Acids

39.35

Weight (kDa)

5.12

Isoelectric Point (pI)

35.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase	PF00394	45 - 122	1.9e-09	Multicopper oxidase
Cu-oxidase_2	PF07731	204 - 335	5.2e-39	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004220)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g12610 FvH4_2g12610 FvH4_2g21650
malus_domestica	MD00G1014800.v1.1 MD00G1190700.v1.1 MD02G1264400.v1.1 MD10G1042600.v1.1
prunus_persica	Prupe.8G047100_v2.0.a1 Prupe.8G047200_v2.0.a1 Prupe.8G047300_v2.0.a1 Prupe.8G047500_v2.0.a1 Prupe.8G047500_v2.0.a1 Prupe.8G047900_v2.0.a1 Prupe.8G048100_v2.0.a1
pyrus_communis	pycom05g02900 pycom10g02970
rosa_chinensis	RchiOBHm_Chr6g0273201 RchiOBHm_Chr6g0288321
rosa_laevigata	RLG00000012414 RLG00000013632 RLG00000013639
rosa_multiflora	Rmu_sc0000239.1_g000090
rosa_roxburghii	Rroxscaffold_7G00180140 Rroxscaffold_7G00195550
rosa_rugosa	Rorug06G0073100 Rorug06G0195600
rosa_samantha	Rh6BG192200 Rh6BG312600 Rh6CG191600 Rh6CG320400 Rh6DG183000 Rh6DG305600
rosa_wichuraiana	Rw6G016390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	395
Acc16I	TGCGCA	1 cut(s)	572
AccB1I	GGYRCC	1 cut(s)	97
AccBSI	CCGCTC	1 cut(s)	1066
AccI	GTMKAC	1 cut(s)	597
AciI	CCGC	4 cut(s)	115, 288, 307, 1064
AclI	AACGTT	1 cut(s)	747
AclWI	GGATC	3 cut(s)	197, 1031, 1044
AcoI	YGGCCR	2 cut(s)	529, 981
AcsI	RAATTY	1 cut(s)	820
AcyI	GRCGYC	2 cut(s)	98, 392
AfaI	GTAC	2 cut(s)	92, 688
AfiI	CCNNNNNNNGG	6 cut(s)	56, 187, 683, 750, 893, 1046
AflIII	ACRYGT	1 cut(s)	565
AgsI	TTSAA	3 cut(s)	15, 142, 725
AhdI	GACNNNNNGTC	1 cut(s)	391
AjiI	CACGTC	1 cut(s)	1018
AjnI	CCWGG	5 cut(s)	235, 244, 915, 928, 971
AloI	GAACNNNNNNTCC	2 cut(s)	323, 355
AluBI	AGCT	6 cut(s)	11, 209, 251, 535, 650, 863
AluI	AGCT	6 cut(s)	11, 209, 251, 535, 650, 863
Alw26I	GTCTC	1 cut(s)	83
AlwI	GGATC	3 cut(s)	197, 1031, 1044
AlwNI	CAGNNNCTG	1 cut(s)	172
Ama87I	CYCGRG	1 cut(s)	187
AoxI	GGCC	2 cut(s)	529, 981
ApeKI	GCWGC	1 cut(s)	647
ApoI	RAATTY	1 cut(s)	820
AseI	ATTAAT	1 cut(s)	483
Asp700I	GAANNNNTTC	1 cut(s)	672
AspLEI	GCGC	2 cut(s)	100, 573
AspS9I	GGNCC	1 cut(s)	1021
AsuHPI	GGTGA	5 cut(s)	206, 334, 428, 671, 706
AvaI	CYCGRG	1 cut(s)	187
AvaII	GGWCC	1 cut(s)	1021
BaeI	ACNNNNGTAYC	2 cut(s)	678, 711
BalI	TGGCCA	1 cut(s)	531
BamHI	GGATCC	1 cut(s)	1036
BanI	GGYRCC	1 cut(s)	97
BauI	CACGAG	1 cut(s)	80
BbsI	GAAGAC	1 cut(s)	387
BbvI	GCAGC	1 cut(s)	659
BccI	CCATC	5 cut(s)	109, 319, 461, 774, 891
BceAI	ACGGC	1 cut(s)	111
BciT130I	CCWGG	5 cut(s)	237, 246, 917, 930, 973
BcoDI	GTCTC	1 cut(s)	83
BfaI	CTAG	1 cut(s)	578
BfmI	CTRYAG	1 cut(s)	681
BfoI	RGCGCY	1 cut(s)	101
BisI	GCNGC	2 cut(s)	115, 648
BlsI	GCNGC	2 cut(s)	116, 649
Bme1390I	CCNGG	5 cut(s)	237, 246, 917, 930, 973
Bme18I	GGWCC	1 cut(s)	1021
BmeRI	GACNNNNNGTC	1 cut(s)	391
BmeT110I	CYCGRG	1 cut(s)	187
BmgBI	CACGTC	1 cut(s)	1018
BmgT120I	GGNCC	1 cut(s)	1021
BmiI	GGNNCC	5 cut(s)	48, 99, 742, 764, 1038
BmrFI	CCNGG	5 cut(s)	237, 246, 917, 930, 973
BmsI	GCATC	2 cut(s)	706, 762
BpiI	GAAGAC	1 cut(s)	387
BpmI	CTGGAG	2 cut(s)	267, 951
BpuEI	CTTGAG	1 cut(s)	849
BsaAI	YACGTR	1 cut(s)	566
BsaBI	GATNNNNATC	1 cut(s)	201
BsaHI	GRCGYC	2 cut(s)	98, 392
BsaI	GGTCTC	1 cut(s)	83
BsaJI	CCNNGG	3 cut(s)	603, 736, 972
BsaWI	WCCGGW	1 cut(s)	353
BsaXI	ACNNNNNCTCC	6 cut(s)	183, 213, 323, 353, 705, 735
Bsc4I	CCNNNNNNNGG	6 cut(s)	56, 187, 683, 750, 893, 1046
Bse118I	RCCGGY	1 cut(s)	463
Bse3DI	GCAATG	1 cut(s)	946
Bse8I	GATNNNNATC	1 cut(s)	201
BseBI	CCWGG	5 cut(s)	237, 246, 917, 930, 973
BseDI	CCNNGG	3 cut(s)	603, 736, 972
BseGI	GGATG	3 cut(s)	523, 766, 902
BseJI	GATNNNNATC	1 cut(s)	201
BseLI	CCNNNNNNNGG	6 cut(s)	56, 187, 683, 750, 893, 1046
BseMI	GCAATG	1 cut(s)	946
BseRI	GAGGAG	1 cut(s)	344
BseXI	GCAGC	1 cut(s)	659
BseYI	CCCAGC	2 cut(s)	613, 1042
BshFI	GGCC	2 cut(s)	531, 983
BshNI	GGYRCC	1 cut(s)	97
BsiHKCI	CYCGRG	1 cut(s)	187
BsiSI	CCGG	4 cut(s)	354, 438, 464, 984
BslI	CCNNNNNNNGG	6 cut(s)	56, 187, 683, 750, 893, 1046
BsmAI	GTCTC	1 cut(s)	83
BsnI	GGCC	2 cut(s)	531, 983
Bso31I	GGTCTC	1 cut(s)	83
BsoBI	CYCGRG	1 cut(s)	187
Bsp143I	GATC	4 cut(s)	131, 202, 520, 1036
BspACI	CCGC	4 cut(s)	115, 288, 307, 1064
BspANI	GGCC	2 cut(s)	531, 983
BspLI	GGNNCC	5 cut(s)	48, 99, 742, 764, 1038
BspPI	GGATC	3 cut(s)	197, 1031, 1044
BspT107I	GGYRCC	1 cut(s)	97
BspTNI	GGTCTC	1 cut(s)	83
BsrBI	CCGCTC	1 cut(s)	1066
BsrDI	GCAATG	1 cut(s)	946
BsrFI	RCCGGY	1 cut(s)	463
BssAI	RCCGGY	1 cut(s)	463
BssECI	CCNNGG	3 cut(s)	603, 736, 972
BssMI	GATC	4 cut(s)	131, 202, 520, 1036
BssNI	GRCGYC	2 cut(s)	98, 392
BssSI	CACGAG	1 cut(s)	80
BssT1I	CCWWGG	1 cut(s)	736
Bst2BI	CACGAG	1 cut(s)	80
Bst2UI	CCWGG	5 cut(s)	237, 246, 917, 930, 973
Bst4CI	ACNGT	5 cut(s)	168, 364, 378, 682, 703
BstACI	GRCGYC	2 cut(s)	98, 392
BstBAI	YACGTR	1 cut(s)	566
BstC8I	GCNNGC	5 cut(s)	62, 533, 903, 966, 1048
BstDEI	CTNAG	3 cut(s)	25, 125, 888
BstF5I	GGATG	3 cut(s)	523, 766, 902
BstH2I	RGCGCY	1 cut(s)	101
BstHHI	GCGC	2 cut(s)	100, 573
BstKTI	GATC	4 cut(s)	134, 205, 523, 1039
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	4 cut(s)	131, 202, 520, 1036
BstNI	CCWGG	5 cut(s)	237, 246, 917, 930, 973
BstNSI	RCATGY	2 cut(s)	64, 968
BstSCI	CCNGG	5 cut(s)	235, 244, 915, 928, 971
BstSFI	CTRYAG	1 cut(s)	681
BstV1I	GCAGC	1 cut(s)	659
BstV2I	GAAGAC	1 cut(s)	387
BstX2I	RGATCY	1 cut(s)	1036
BstYI	RGATCY	1 cut(s)	1036
BsuRI	GGCC	2 cut(s)	531, 983
BtrI	CACGTC	1 cut(s)	1018
BtsCI	GGATG	3 cut(s)	523, 766, 902
BtsIMutI	CAGTG	1 cut(s)	360
Cac8I	GCNNGC	5 cut(s)	62, 533, 903, 966, 1048
CaiI	CAGNNNCTG	1 cut(s)	172
CfoI	GCGC	2 cut(s)	100, 573
Cfr10I	RCCGGY	1 cut(s)	463
Cfr13I	GGNCC	1 cut(s)	1021
CseI	GACGC	1 cut(s)	169
Csp6I	GTAC	2 cut(s)	91, 687
CviAII	CATG	4 cut(s)	61, 135, 782, 965
CviQI	GTAC	2 cut(s)	91, 687
DdeI	CTNAG	3 cut(s)	25, 125, 888
DinI	GGCGCC	1 cut(s)	99
DpnI	GATC	4 cut(s)	133, 204, 522, 1038
DpnII	GATC	4 cut(s)	131, 202, 520, 1036
DriI	GACNNNNNGTC	1 cut(s)	391
EaeI	YGGCCR	2 cut(s)	529, 981
Eam1105I	GACNNNNNGTC	1 cut(s)	391
Eco130I	CCWWGG	1 cut(s)	736
Eco31I	GGTCTC	1 cut(s)	83
Eco47I	GGWCC	1 cut(s)	1021
Eco88I	CYCGRG	1 cut(s)	187
EcoRII	CCWGG	5 cut(s)	235, 244, 915, 928, 971
EcoT14I	CCWWGG	1 cut(s)	736
EcoT22I	ATGCAT	1 cut(s)	777
EgeI	GGCGCC	1 cut(s)	99
EheI	GGCGCC	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	736
FaeI	CATG	4 cut(s)	64, 138, 785, 968
FatI	CATG	4 cut(s)	60, 134, 781, 964
FblI	GTMKAC	1 cut(s)	597
Fnu4HI	GCNGC	2 cut(s)	115, 648
FokI	GGATG	3 cut(s)	530, 753, 909
Fsp4HI	GCNGC	2 cut(s)	115, 648
FspBI	CTAG	1 cut(s)	578
FspI	TGCGCA	1 cut(s)	572
GlaI	GCGC	2 cut(s)	99, 572
GluI	GCNGC	2 cut(s)	115, 648
GsaI	CCCAGC	2 cut(s)	617, 1046
GsuI	CTGGAG	2 cut(s)	267, 951
HaeII	RGCGCY	1 cut(s)	101
HaeIII	GGCC	2 cut(s)	531, 983
HapII	CCGG	4 cut(s)	354, 438, 464, 984
HgaI	GACGC	1 cut(s)	169
HhaI	GCGC	2 cut(s)	100, 573
Hin1I	GRCGYC	2 cut(s)	98, 392
Hin1II	CATG	4 cut(s)	64, 138, 785, 968
Hin6I	GCGC	2 cut(s)	98, 571
HinP1I	GCGC	2 cut(s)	98, 571
HincII	GTYRAC	1 cut(s)	706
HindII	GTYRAC	1 cut(s)	706
HinfI	GANTC	6 cut(s)	176, 212, 386, 511, 912, 1027
HpaI	GTTAAC	1 cut(s)	706
HpaII	CCGG	4 cut(s)	354, 438, 464, 984
HphI	GGTGA	5 cut(s)	206, 334, 428, 671, 706
Hpy166II	GTNNAC	5 cut(s)	93, 433, 598, 706, 1021
Hpy188I	TCNGA	4 cut(s)	36, 385, 448, 771
Hpy188III	TCNNGA	5 cut(s)	173, 189, 515, 816, 997
Hpy8I	GTNNAC	5 cut(s)	93, 433, 598, 706, 1021
Hpy99I	CGWCG	1 cut(s)	394
HpyAV	CCTTC	2 cut(s)	37, 685
HpyCH4III	ACNGT	5 cut(s)	168, 364, 378, 682, 703
HpyCH4IV	ACGT	6 cut(s)	296, 392, 442, 565, 747, 1017
HpyCH4V	TGCA	6 cut(s)	277, 347, 647, 719, 775, 946
HpyF3I	CTNAG	3 cut(s)	25, 125, 888
HpySE526I	ACGT	6 cut(s)	296, 392, 442, 565, 747, 1017
Hsp92I	GRCGYC	2 cut(s)	98, 392
Hsp92II	CATG	4 cut(s)	64, 138, 785, 968
HspAI	GCGC	2 cut(s)	98, 571
KasI	GGCGCC	1 cut(s)	97
KspAI	GTTAAC	1 cut(s)	706
Kzo9I	GATC	4 cut(s)	131, 202, 520, 1036
LmnI	GCTCC	3 cut(s)	8, 248, 1071
Lsp1109I	GCAGC	1 cut(s)	659
LweI	GCATC	2 cut(s)	706, 762
MaeI	CTAG	1 cut(s)	578
MaeII	ACGT	6 cut(s)	296, 392, 442, 565, 747, 1017
MaeIII	GTNAC	5 cut(s)	257, 356, 364, 404, 466
MalI	GATC	4 cut(s)	133, 204, 522, 1038
MbiI	CCGCTC	1 cut(s)	1066
MboI	GATC	4 cut(s)	131, 202, 520, 1036
MboII	GAAGA	6 cut(s)	52, 141, 387, 530, 822, 1012
MflI	RGATCY	1 cut(s)	1036
MlsI	TGGCCA	1 cut(s)	531
MluCI	AATT	6 cut(s)	348, 477, 484, 556, 820, 1072
MluNI	TGGCCA	1 cut(s)	531
Mly113I	GGCGCC	1 cut(s)	98
MlyI	GAGTC	3 cut(s)	170, 380, 1021
MmeI	TCCRAC	5 cut(s)	145, 363, 566, 701, 831
MnlI	CCTC	7 cut(s)	96, 128, 185, 322, 325, 598, 1065
Mox20I	TGGCCA	1 cut(s)	531
Mph1103I	ATGCAT	1 cut(s)	777
MroXI	GAANNNNTTC	1 cut(s)	672
MscI	TGGCCA	1 cut(s)	531
MseI	TTAA	4 cut(s)	483, 705, 1071, 1075
MslI	CAYNNNNRTG	1 cut(s)	780
Msp20I	TGGCCA	1 cut(s)	531
MspA1I	CMGCKG	2 cut(s)	209, 650
MspI	CCGG	4 cut(s)	354, 438, 464, 984
MspR9I	CCNGG	5 cut(s)	237, 246, 917, 930, 973
MvaI	CCWGG	5 cut(s)	237, 246, 917, 930, 973
NarI	GGCGCC	1 cut(s)	98
NdeII	GATC	4 cut(s)	131, 202, 520, 1036
NlaIII	CATG	4 cut(s)	64, 138, 785, 968
NlaIV	GGNNCC	5 cut(s)	48, 99, 742, 764, 1038
NmuCI	GTSAC	3 cut(s)	257, 356, 364
NsbI	TGCGCA	1 cut(s)	572
NsiI	ATGCAT	1 cut(s)	777
NspI	RCATGY	2 cut(s)	64, 968
PacI	TTAATTAA	1 cut(s)	1075
PaeI	GCATGC	2 cut(s)	64, 968
PcsI	WCGNNNNNNNCGW	1 cut(s)	389
PdmI	GAANNNNTTC	1 cut(s)	672
PfeI	GAWTC	3 cut(s)	212, 511, 912
PfoI	TCCNGGA	2 cut(s)	235, 928
PkrI	GCNGC	2 cut(s)	116, 649
PleI	GAGTC	3 cut(s)	170, 380, 1021
PluTI	GGCGCC	1 cut(s)	101
PpsI	GAGTC	3 cut(s)	170, 380, 1021
Ppu21I	YACGTR	1 cut(s)	566
PshBI	ATTAAT	1 cut(s)	483
Psp1406I	AACGTT	1 cut(s)	747
Psp6I	CCWGG	5 cut(s)	235, 244, 915, 928, 971
PspFI	CCCAGC	2 cut(s)	613, 1042
PspGI	CCWGG	5 cut(s)	235, 244, 915, 928, 971
PspN4I	GGNNCC	5 cut(s)	48, 99, 742, 764, 1038
PspPI	GGNCC	1 cut(s)	1021
PstNI	CAGNNNCTG	1 cut(s)	172
PsuI	RGATCY	1 cut(s)	1036
PvuII	CAGCTG	2 cut(s)	209, 650
RsaI	GTAC	2 cut(s)	92, 688
RsaNI	GTAC	2 cut(s)	91, 687
RseI	CAYNNNNRTG	1 cut(s)	780
SaqAI	TTAA	4 cut(s)	483, 705, 1071, 1075
SatI	GCNGC	2 cut(s)	115, 648
Sau3AI	GATC	4 cut(s)	131, 202, 520, 1036
Sau96I	GGNCC	1 cut(s)	1021
SchI	GAGTC	3 cut(s)	170, 380, 1021
ScrFI	CCNGG	5 cut(s)	237, 246, 917, 930, 973
SfaNI	GCATC	2 cut(s)	706, 762
SfcI	CTRYAG	1 cut(s)	681
SfoI	GGCGCC	1 cut(s)	99
SinI	GGWCC	1 cut(s)	1021
SmiMI	CAYNNNNRTG	1 cut(s)	780
SmlI	CTYRAG	1 cut(s)	864
SmoI	CTYRAG	1 cut(s)	864
SphI	GCATGC	2 cut(s)	64, 968
Sse9I	AATT	6 cut(s)	348, 477, 484, 556, 820, 1072
SsiI	CCGC	4 cut(s)	115, 288, 307, 1064
SspDI	GGCGCC	1 cut(s)	97
SspI	AATATT	1 cut(s)	273
SspMI	CTAG	1 cut(s)	578
StyD4I	CCNGG	5 cut(s)	235, 244, 915, 928, 971
StyI	CCWWGG	1 cut(s)	736
TaaI	ACNGT	5 cut(s)	168, 364, 378, 682, 703
TaiI	ACGT	6 cut(s)	299, 395, 445, 568, 750, 1020
TaqI	TCGA	2 cut(s)	389, 456
TasI	AATT	6 cut(s)	348, 477, 484, 556, 820, 1072
TauI	GCSGC	1 cut(s)	117
TfiI	GAWTC	3 cut(s)	212, 511, 912
Tru1I	TTAA	4 cut(s)	483, 705, 1071, 1075
Tru9I	TTAA	4 cut(s)	483, 705, 1071, 1075
TscAI	CASTG	1 cut(s)	367
TseFI	GTSAC	3 cut(s)	257, 356, 364
TseI	GCWGC	1 cut(s)	647
Tsp45I	GTSAC	3 cut(s)	257, 356, 364
TspDTI	ATGAA	5 cut(s)	17, 53, 681, 770, 822
TspGWI	ACGGA	1 cut(s)	78
TspRI	CASTG	1 cut(s)	367
VpaK11BI	GGWCC	1 cut(s)	1021
VspI	ATTAAT	1 cut(s)	483
XapI	RAATTY	1 cut(s)	820
XceI	RCATGY	2 cut(s)	64, 968
XmiI	GTMKAC	1 cut(s)	597
XmnI	GAANNNNTTC	1 cut(s)	672
XspI	CTAG	1 cut(s)	578
ZraI	GACGTC	1 cut(s)	393
Zsp2I	ATGCAT	1 cut(s)	777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.