Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004220

Physical Location & Seq

Genomic Coordinates Forward (+)

31511187 .. 31516454

Gene Structure 5268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG191600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGCTACGCATAATCAACGCTATCATGAACGAAGAACAGTTTTTTGCCATTGCCAACCACAACCTCACAGTGGTCACCCAAGACGCGTCCTACATAAAACCCATCACCACCCCTTACATCATGATAACTCCAGGCCAAACTATGGACGTTTTGGTCACCACAAACCAGCCTCGCAGCCATTACTACATGGCTTCAACTGCTTACAATGACGGCGATGTTCCATATCACAACGGCACAACCACGGCCATTCTTCAATATCGAGGAAACTATTCCACCCCATCAACCACTCCGTTACCCAACCTTCCTATCCATAATGACACAACAGCTGCTGACAACTTCACCGCCCTTGTGAAGTCTTTGGCAAGCAAGGCACACCCCATCAGTGTTCCGACAAACATCACGACCAGGATCTACATGACTGTTTCTATCAATGAACGGATTTGTGCTAACGCTTCTTGTGCCGGGCCGAATAATAATGCCATTGCTGCTAGCTTAAACAACATCAGTTTTGATACTCCCTCCATTGATATACTACAAGCTTATTATAGGGGAATAAATGGAGTTTTTCAGGGCAACTTCCCATCCAACCCGCCTCTTTTTTTCAATTTCACCGGAGAAGTGGTAAACAGTACCAAATATCCGACCTTCGCAACCAAAGTAAAGTTCCTCAAATATGGTGAAGGAGTTGAAATAATCTTCCAAGGGACCAACCTCGTTGCTCCTGAGAACCATCCAATGCATCTCCATGGTTTTAGTTTTTATTTGGTTGGAACAGGTTACGGGAATTTTAACAAAGCCACCTCACCTAAAACATACAATTTGGTTGATCCACCAGAAGCCAACACCATTGGCGTTCCAAAGAACGGATGGGCTACCATCAGATTCGTAGCTGATAATCCTGGTAAGTGTATGATTTTTTGGTCAATGTGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

311

Amino Acids

34.18

Weight (kDa)

7.08

Isoelectric Point (pI)

29.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase	PF00394	2 - 89	2e-24	Multicopper oxidase
Cu-oxidase_2	PF07731	194 - 304	7.1e-27	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004220)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g12610 FvH4_2g12610 FvH4_2g21650
malus_domestica	MD00G1014800.v1.1 MD00G1190700.v1.1 MD02G1264400.v1.1 MD10G1042600.v1.1
prunus_persica	Prupe.8G047100_v2.0.a1 Prupe.8G047200_v2.0.a1 Prupe.8G047300_v2.0.a1 Prupe.8G047500_v2.0.a1 Prupe.8G047500_v2.0.a1 Prupe.8G047900_v2.0.a1 Prupe.8G048100_v2.0.a1
pyrus_communis	pycom05g02900 pycom10g02970
rosa_chinensis	RchiOBHm_Chr6g0273201 RchiOBHm_Chr6g0288321
rosa_laevigata	RLG00000012414 RLG00000013632 RLG00000013639
rosa_multiflora	Rmu_sc0000239.1_g000090
rosa_roxburghii	Rroxscaffold_7G00180140 Rroxscaffold_7G00195550
rosa_rugosa	Rorug06G0073100 Rorug06G0195600
rosa_samantha	Rh6BG192200 Rh6BG312600 Rh6CG191600 Rh6CG320400 Rh6DG183000 Rh6DG305600
rosa_wichuraiana	Rw6G016390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	152
AccB7I	CCANNNNNTGG	1 cut(s)	142
AccII	CGCG	1 cut(s)	86
AciI	CCGC	2 cut(s)	342, 590
AclWI	GGATC	2 cut(s)	416, 821
AcoI	YGGCCR	1 cut(s)	243
AcsI	RAATTY	1 cut(s)	784
AfaI	GTAC	1 cut(s)	631
AfiI	CCNNNNNNNGG	3 cut(s)	70, 142, 863
AflIII	ACRYGT	1 cut(s)	84
AgsI	TTSAA	4 cut(s)	195, 254, 604, 689
AjnI	CCWGG	3 cut(s)	130, 404, 898
AjuI	GAANNNNNNNTTGG	2 cut(s)	647, 679
AluBI	AGCT	4 cut(s)	326, 492, 539, 890
AluI	AGCT	4 cut(s)	326, 492, 539, 890
AlwI	GGATC	2 cut(s)	416, 821
AlwNI	CAGNNNCTG	1 cut(s)	329
AoxI	GGCC	3 cut(s)	133, 243, 464
ApeKI	GCWGC	3 cut(s)	174, 326, 485
ApoI	RAATTY	1 cut(s)	784
Asp700I	GAANNNNTTC	1 cut(s)	268
AspS9I	GGNCC	2 cut(s)	464, 705
AsuC2I	CCSGG	1 cut(s)	463
AsuHPI	GGTGA	7 cut(s)	67, 97, 148, 331, 601, 689, 795
AsuNHI	GCTAGC	1 cut(s)	488
AvaII	GGWCC	1 cut(s)	705
BbvI	GCAGC	3 cut(s)	186, 313, 472
BccI	CCATC	7 cut(s)	110, 286, 386, 589, 738, 861, 884
BceAI	ACGGC	3 cut(s)	226, 247, 258
BciT130I	CCWGG	3 cut(s)	132, 406, 900
BcnI	CCSGG	1 cut(s)	463
BfaI	CTAG	1 cut(s)	489
BisI	GCNGC	3 cut(s)	175, 327, 486
BlsI	GCNGC	3 cut(s)	176, 328, 487
Bme1390I	CCNGG	4 cut(s)	132, 406, 463, 900
Bme18I	GGWCC	1 cut(s)	705
BmgT120I	GGNCC	2 cut(s)	464, 705
BmiI	GGNNCC	1 cut(s)	706
BmrFI	CCNGG	4 cut(s)	132, 406, 463, 900
BmsI	GCATC	1 cut(s)	748
BmtI	GCTAGC	1 cut(s)	492
BpmI	CTGGAG	1 cut(s)	114
BpuMI	CCSGG	1 cut(s)	463
BsaJI	CCNNGG	3 cut(s)	240, 700, 745
BsaWI	WCCGGW	1 cut(s)	611
BsaXI	ACNNNNNCTCC	2 cut(s)	606, 636
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 142, 863
Bse3DI	GCAATG	2 cut(s)	48, 480
BseBI	CCWGG	3 cut(s)	132, 406, 900
BseDI	CCNNGG	3 cut(s)	240, 700, 745
BseGI	GGATG	3 cut(s)	581, 730, 872
BseLI	CCNNNNNNNGG	3 cut(s)	70, 142, 863
BseMI	GCAATG	2 cut(s)	48, 480
BseMII	CTCAG	1 cut(s)	714
BseXI	GCAGC	3 cut(s)	186, 313, 472
Bsh1236I	CGCG	1 cut(s)	86
BshFI	GGCC	3 cut(s)	135, 245, 466
BsiSI	CCGG	2 cut(s)	462, 612
BslFI	GGGAC	1 cut(s)	718
BslI	CCNNNNNNNGG	3 cut(s)	70, 142, 863
BsmFI	GGGAC	1 cut(s)	718
BsnI	GGCC	3 cut(s)	135, 245, 466
Bsp143I	GATC	2 cut(s)	408, 826
Bsp19I	CCATGG	1 cut(s)	745
BspACI	CCGC	2 cut(s)	342, 590
BspANI	GGCC	3 cut(s)	135, 245, 466
BspCNI	CTCAG	1 cut(s)	715
BspFNI	CGCG	1 cut(s)	86
BspHI	TCATGA	2 cut(s)	24, 120
BspLI	GGNNCC	1 cut(s)	706
BspOI	GCTAGC	1 cut(s)	492
BspPI	GGATC	2 cut(s)	416, 821
BsrDI	GCAATG	2 cut(s)	48, 480
BssECI	CCNNGG	3 cut(s)	240, 700, 745
BssMI	GATC	2 cut(s)	408, 826
BssT1I	CCWWGG	2 cut(s)	700, 745
Bst2UI	CCWGG	3 cut(s)	132, 406, 900
Bst4CI	ACNGT	4 cut(s)	39, 70, 421, 629
BstC8I	GCNNGC	2 cut(s)	364, 490
BstDEI	CTNAG	1 cut(s)	723
BstDSI	CCRYGG	2 cut(s)	240, 745
BstEII	GGTNACC	2 cut(s)	73, 154
BstF5I	GGATG	3 cut(s)	581, 730, 872
BstFNI	CGCG	1 cut(s)	86
BstKTI	GATC	2 cut(s)	411, 829
BstMBI	GATC	2 cut(s)	408, 826
BstMWI	GCNNNNNNNGC	4 cut(s)	197, 368, 458, 485
BstNI	CCWGG	3 cut(s)	132, 406, 900
BstPI	GGTNACC	2 cut(s)	73, 154
BstSCI	CCNGG	4 cut(s)	130, 404, 461, 898
BstUI	CGCG	1 cut(s)	86
BstV1I	GCAGC	3 cut(s)	186, 313, 472
BstX2I	RGATCY	1 cut(s)	408
BstYI	RGATCY	1 cut(s)	408
BsuRI	GGCC	3 cut(s)	135, 245, 466
BtgI	CCRYGG	2 cut(s)	240, 745
BtgZI	GCGATG	1 cut(s)	228
BtsCI	GGATG	3 cut(s)	581, 730, 872
BtsIMutI	CAGTG	2 cut(s)	75, 388
Cac8I	GCNNGC	2 cut(s)	364, 490
CaiI	CAGNNNCTG	1 cut(s)	329
CciI	TCATGA	2 cut(s)	24, 120
Cfr13I	GGNCC	2 cut(s)	464, 705
CseI	GACGC	2 cut(s)	75, 92
Csp6I	GTAC	1 cut(s)	630
CviAII	CATG	5 cut(s)	25, 121, 187, 415, 746
CviQI	GTAC	1 cut(s)	630
DdeI	CTNAG	1 cut(s)	723
DpnI	GATC	2 cut(s)	410, 828
DpnII	GATC	2 cut(s)	408, 826
DrdI	GACNNNNNNGTC	1 cut(s)	152
DseDI	GACNNNNNNGTC	1 cut(s)	152
EaeI	YGGCCR	1 cut(s)	243
Eco130I	CCWWGG	2 cut(s)	700, 745
Eco47I	GGWCC	1 cut(s)	705
Eco91I	GGTNACC	2 cut(s)	73, 154
EcoO65I	GGTNACC	2 cut(s)	73, 154
EcoRII	CCWGG	3 cut(s)	130, 404, 898
EcoT14I	CCWWGG	2 cut(s)	700, 745
EcoT22I	ATGCAT	1 cut(s)	741
ErhI	CCWWGG	2 cut(s)	700, 745
FaeI	CATG	5 cut(s)	28, 124, 190, 418, 749
FaqI	GGGAC	1 cut(s)	718
FatI	CATG	5 cut(s)	24, 120, 186, 414, 745
FauI	CCCGC	1 cut(s)	597
Fnu4HI	GCNGC	3 cut(s)	175, 327, 486
FokI	GGATG	3 cut(s)	568, 717, 879
Fsp4HI	GCNGC	3 cut(s)	175, 327, 486
FspBI	CTAG	1 cut(s)	489
GluI	GCNGC	3 cut(s)	175, 327, 486
GsuI	CTGGAG	1 cut(s)	114
HaeIII	GGCC	3 cut(s)	135, 245, 466
HapII	CCGG	2 cut(s)	462, 612
HgaI	GACGC	2 cut(s)	75, 92
Hin1II	CATG	5 cut(s)	28, 124, 190, 418, 749
HindIII	AAGCTT	1 cut(s)	537
HinfI	GANTC	1 cut(s)	882
HpaII	CCGG	2 cut(s)	462, 612
HphI	GGTGA	7 cut(s)	67, 97, 148, 331, 601, 689, 795
Hpy166II	GTNNAC	1 cut(s)	625
Hpy188I	TCNGA	3 cut(s)	390, 642, 881
Hpy188III	TCNNGA	4 cut(s)	25, 121, 400, 722
Hpy8I	GTNNAC	1 cut(s)	625
HpyAV	CCTTC	3 cut(s)	311, 655, 674
HpyCH4III	ACNGT	4 cut(s)	39, 70, 421, 629
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	1 cut(s)	739
HpyF10VI	GCNNNNNNNGC	4 cut(s)	197, 368, 458, 485
HpyF3I	CTNAG	1 cut(s)	723
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	5 cut(s)	28, 124, 190, 418, 749
Kzo9I	GATC	2 cut(s)	408, 826
LmnI	GCTCC	1 cut(s)	724
Lsp1109I	GCAGC	3 cut(s)	186, 313, 472
LweI	GCATC	1 cut(s)	748
MaeI	CTAG	1 cut(s)	489
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	4 cut(s)	73, 154, 291, 776
MalI	GATC	2 cut(s)	410, 828
MboI	GATC	2 cut(s)	408, 826
MboII	GAAGA	3 cut(s)	44, 242, 688
MflI	RGATCY	1 cut(s)	408
MluCI	AATT	3 cut(s)	604, 784, 817
MluI	ACGCGT	1 cut(s)	84
MmeI	TCCRAC	4 cut(s)	413, 609, 665, 748
MnlI	CCTC	8 cut(s)	74, 180, 254, 529, 603, 677, 722, 811
Mph1103I	ATGCAT	1 cut(s)	741
MroXI	GAANNNNTTC	1 cut(s)	268
MseI	TTAA	2 cut(s)	494, 789
MslI	CAYNNNNRTG	1 cut(s)	744
MspA1I	CMGCKG	1 cut(s)	326
MspI	CCGG	2 cut(s)	462, 612
MspR9I	CCNGG	4 cut(s)	132, 406, 463, 900
MvaI	CCWGG	3 cut(s)	132, 406, 900
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	4 cut(s)	197, 368, 458, 485
NciI	CCSGG	1 cut(s)	463
NcoI	CCATGG	1 cut(s)	745
NdeII	GATC	2 cut(s)	408, 826
NheI	GCTAGC	1 cut(s)	488
NlaIII	CATG	5 cut(s)	28, 124, 190, 418, 749
NlaIV	GGNNCC	1 cut(s)	706
NmuCI	GTSAC	2 cut(s)	73, 154
NsiI	ATGCAT	1 cut(s)	741
PagI	TCATGA	2 cut(s)	24, 120
PdmI	GAANNNNTTC	1 cut(s)	268
PfeI	GAWTC	1 cut(s)	882
PflMI	CCANNNNNTGG	1 cut(s)	142
PkrI	GCNGC	3 cut(s)	176, 328, 487
Psp6I	CCWGG	3 cut(s)	130, 404, 898
PspEI	GGTNACC	2 cut(s)	73, 154
PspGI	CCWGG	3 cut(s)	130, 404, 898
PspN4I	GGNNCC	1 cut(s)	706
PspPI	GGNCC	2 cut(s)	464, 705
PstNI	CAGNNNCTG	1 cut(s)	329
PsuI	RGATCY	1 cut(s)	408
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	1 cut(s)	631
RsaNI	GTAC	1 cut(s)	630
RseI	CAYNNNNRTG	1 cut(s)	744
SaqAI	TTAA	2 cut(s)	494, 789
SatI	GCNGC	3 cut(s)	175, 327, 486
Sau3AI	GATC	2 cut(s)	408, 826
Sau96I	GGNCC	2 cut(s)	464, 705
ScrFI	CCNGG	4 cut(s)	132, 406, 463, 900
SfaNI	GCATC	1 cut(s)	748
SinI	GGWCC	1 cut(s)	705
SmiMI	CAYNNNNRTG	1 cut(s)	744
Sse9I	AATT	3 cut(s)	604, 784, 817
SsiI	CCGC	2 cut(s)	342, 590
SspMI	CTAG	1 cut(s)	489
StyD4I	CCNGG	4 cut(s)	130, 404, 461, 898
StyI	CCWWGG	2 cut(s)	700, 745
TaaI	ACNGT	4 cut(s)	39, 70, 421, 629
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	1 cut(s)	259
TasI	AATT	3 cut(s)	604, 784, 817
TfiI	GAWTC	1 cut(s)	882
Tru1I	TTAA	2 cut(s)	494, 789
Tru9I	TTAA	2 cut(s)	494, 789
TscAI	CASTG	2 cut(s)	75, 388
TseFI	GTSAC	2 cut(s)	73, 154
TseI	GCWGC	3 cut(s)	174, 326, 485
Tsp45I	GTSAC	2 cut(s)	73, 154
TspDTI	ATGAA	2 cut(s)	41, 447
TspGWI	ACGGA	3 cut(s)	279, 451, 879
TspRI	CASTG	2 cut(s)	75, 388
Van91I	CCANNNNNTGG	1 cut(s)	142
VpaK11BI	GGWCC	1 cut(s)	705
XapI	RAATTY	1 cut(s)	784
XcmI	CCANNNNNNNNNTGG	1 cut(s)	864
XmnI	GAANNNNTTC	1 cut(s)	268
XspI	CTAG	1 cut(s)	489
Zsp2I	ATGCAT	1 cut(s)	741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.