Rh6BG312600

Lignin degradation and detoxification of lignin-derived products

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Reverse (-)
54220039 .. 54227711
7673 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG312600.1

Sequence Viewer

Length: 1161 bp
ATGGAAGATTACCGGGATTCCGTAATCTGGGGGGGCGATGTTGAAGGAGCAACTTCTTTCGCGATCAACGGTTATCCCGGACAGCTTGAAACTCCTTGTGATAATGACATGTACAAATTTGTTGTTGACAGCGGAAAAAATCACCATCTCCGCATAATCAATGCGGTGATGGAGGAGGAAATGTTCTTTGCAATTTCCGGTCACAACTTCACGGTTGTTGGACTTGACGGTGCATATCTGACTCCGATACCCACAAACTACATCATGATAACTCCTGGCCAAACGATGGACATATTGCTCACTACGAATCAGACTCCGCGTAGTTACTACATGGGTGGAAAGGCTTTTGTCGACTCCAAATTTGGTACACCCATGAACTCCACAACAAGAGCAATTCTTCAATACCGCAATTATAAAGGCACTGAAGATCCAGTTGATCTCGGAGACCTTCTTCCAGCTGATTCAAAAAACGCGAGTTATGCAAAGGCCTTCACCGAAAGAGTTCGAACCAGCGGATTGACAGGCAACGATGATTACCCGATTACGGTCCCCACTGATTCTGAAATCAATAAGAACTTCACCATCACAATTTCTGTGAATACGCTTCCTTGTCCATATCCTAGTAACAATTGCACGGCGCCGCAAAACTATAATGCAACTTGGACAGGGATGCACGCTGCATCCTTAAACAACCAACGTTTCGTCACCCAAAATGTCAACATACTGCAGGCATATCGCTGCAACATAGAAGATGTCTACACAGAGGATTTCCCAGACAGACCAGAGGAGTTCGACTACACTGGGGCGACCGGAAATAATGAAACAGTTCCAACTGTAGGTACGAAGGTGATGACAGTTGACTATGGAGAAGCAGTTGAAATAGTTTTCCAAGGAACCAATGTCGGAAACGCAGAGAACCATCCCATGCATATTCATGGTTATAACTTCTATCTGGTTGGGAGTGATGATGGCAATTTCAACGACTCTTCACGTGAAACTTTTAATTTGACATCCCCAGCTGAAGCCAATACCTTTGGAGTCCCTAAGAATGGATGGCTCGCTGTTAGATTCTGGGCTAACAATCCTGTCCGTATGTACGTTGTTGGTGAAAATAAACTAATGAACATAACTGCCAGTCGATATCGATCAGAAGCTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

386

Amino Acids

42.89

Weight (kDa)

4.68

Isoelectric Point (pI)

37.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase PF00394 17 - 137 5.6e-27 Multicopper oxidase
Cu-oxidase_2 PF07731 258 - 364 7.5e-25 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 414, 942
AccB1I GGYRCC 1 cut(s) 637
AccB7I CCANNNNNTGG 1 cut(s) 286
AccI GTMKAC 2 cut(s) 351, 756
AccII CGCG 3 cut(s) 62, 319, 473
AciI CCGC 7 cut(s) 132, 151, 164, 317, 406, 513, 641
AclI AACGTT 1 cut(s) 697
AclWI GGATC 1 cut(s) 422
AcoI YGGCCR 1 cut(s) 277
AcsI RAATTY 2 cut(s) 116, 359
AcuI CTGAAG 2 cut(s) 444, 1041
AcvI CACGTG 1 cut(s) 992
AcyI GRCGYC 1 cut(s) 638
AfaI GTAC 4 cut(s) 113, 367, 841, 1097
AfiI CCNNNNNNNGG 5 cut(s) 27, 286, 544, 836, 1049
AflIII ACRYGT 1 cut(s) 108
AgsI TTSAA 6 cut(s) 44, 89, 401, 465, 878, 979
AjnI CCWGG 1 cut(s) 274
AloI GAACNNNNNNTCC 2 cut(s) 167, 199
AluBI AGCT 5 cut(s) 85, 458, 1019, 1154, 1158
AluI AGCT 5 cut(s) 85, 458, 1019, 1154, 1158
Alw26I GTCTC 1 cut(s) 438
AlwI GGATC 1 cut(s) 422
AoxI GGCC 2 cut(s) 277, 486
ApeKI GCWGC 2 cut(s) 677, 738
ApoI RAATTY 2 cut(s) 116, 359
ArsI GACNNNNNNTTYG 2 cut(s) 344, 376
Asp700I GAANNNNTTC 2 cut(s) 501, 825
AspLEI GCGC 1 cut(s) 640
AspS9I GGNCC 1 cut(s) 547
AsuC2I CCSGG 2 cut(s) 14, 78
AsuHPI GGTGA 7 cut(s) 134, 178, 484, 571, 697, 859, 1118
AsuII TTCGAA 1 cut(s) 505
AsuNHI GCTAGC 1 cut(s) 1154
AvaII GGWCC 1 cut(s) 547
BaeI ACNNNNGTAYC 2 cut(s) 831, 864
BalI TGGCCA 1 cut(s) 279
BanI GGYRCC 1 cut(s) 637
BbrPI CACGTG 1 cut(s) 992
BbvI GCAGC 2 cut(s) 664, 725
BccI CCATC 7 cut(s) 153, 163, 280, 590, 927, 962, 1047
BceAI ACGGC 1 cut(s) 651
BcgI CGANNNNNNTGC 2 cut(s) 716, 750
BciT130I CCWGG 1 cut(s) 276
BcnI CCSGG 2 cut(s) 14, 78
BcoDI GTCTC 1 cut(s) 438
BfaI CTAG 2 cut(s) 621, 1155
BfmI CTRYAG 2 cut(s) 725, 834
BfoI RGCGCY 1 cut(s) 641
BisI GCNGC 3 cut(s) 641, 678, 739
BlsI GCNGC 3 cut(s) 642, 679, 740
Bme1390I CCNGG 3 cut(s) 14, 78, 276
Bme18I GGWCC 1 cut(s) 547
BmgT120I GGNCC 1 cut(s) 547
BmiI GGNNCC 3 cut(s) 549, 639, 895
BmrFI CCNGG 3 cut(s) 14, 78, 276
BmrI ACTGGG 1 cut(s) 810
BmsI GCATC 2 cut(s) 660, 689
BmtI GCTAGC 1 cut(s) 1158
BmuI ACTGGG 1 cut(s) 810
Bpu14I TTCGAA 1 cut(s) 505
BpuMI CCSGG 2 cut(s) 14, 78
Bsa29I ATCGAT 1 cut(s) 1144
BsaAI YACGTR 1 cut(s) 992
BsaBI GATNNNNATC 1 cut(s) 1144
BsaHI GRCGYC 1 cut(s) 638
BsaI GGTCTC 1 cut(s) 438
BsaJI CCNNGG 1 cut(s) 889
BsaWI WCCGGW 2 cut(s) 197, 809
BsaXI ACNNNNNCTCC 4 cut(s) 167, 197, 858, 888
Bsc4I CCNNNNNNNGG 5 cut(s) 27, 286, 544, 836, 1049
Bse1I ACTGG 3 cut(s) 431, 805, 1134
Bse8I GATNNNNATC 1 cut(s) 1144
BseBI CCWGG 1 cut(s) 276
BseCI ATCGAT 1 cut(s) 1144
BseDI CCNNGG 1 cut(s) 889
BseGI GGATG 5 cut(s) 675, 680, 919, 1010, 1058
BseJI GATNNNNATC 1 cut(s) 1144
BseLI CCNNNNNNNGG 5 cut(s) 27, 286, 544, 836, 1049
BseNI ACTGG 3 cut(s) 431, 805, 1134
BseRI GAGGAG 2 cut(s) 188, 800
BseXI GCAGC 2 cut(s) 664, 725
BseYI CCCAGC 1 cut(s) 1015
Bsh1236I CGCG 3 cut(s) 62, 319, 473
Bsh1285I CGRYCG 1 cut(s) 810
BshFI GGCC 2 cut(s) 279, 488
BshNI GGYRCC 1 cut(s) 637
BshVI ATCGAT 1 cut(s) 1144
BsiEI CGRYCG 1 cut(s) 810
BsiSI CCGG 4 cut(s) 13, 78, 198, 810
BslFI GGGAC 2 cut(s) 533, 1025
BslI CCNNNNNNNGG 5 cut(s) 27, 286, 544, 836, 1049
BsmAI GTCTC 1 cut(s) 438
BsmFI GGGAC 2 cut(s) 533, 1025
BsnI GGCC 2 cut(s) 279, 488
Bso31I GGTCTC 1 cut(s) 438
Bsp119I TTCGAA 1 cut(s) 505
Bsp1407I TGTACA 1 cut(s) 111
Bsp143I GATC 4 cut(s) 63, 427, 436, 1145
Bsp68I TCGCGA 1 cut(s) 62
BspACI CCGC 7 cut(s) 132, 151, 164, 317, 406, 513, 641
BspANI GGCC 2 cut(s) 279, 488
BspDI ATCGAT 1 cut(s) 1144
BspFNI CGCG 3 cut(s) 62, 319, 473
BspHI TCATGA 1 cut(s) 264
BspLI GGNNCC 3 cut(s) 549, 639, 895
BspMAI CTGCAG 1 cut(s) 729
BspOI GCTAGC 1 cut(s) 1158
BspPI GGATC 1 cut(s) 422
BspT104I TTCGAA 1 cut(s) 505
BspT107I GGYRCC 1 cut(s) 637
BspTNI GGTCTC 1 cut(s) 438
BsrGI TGTACA 1 cut(s) 111
BsrI ACTGG 3 cut(s) 431, 805, 1134
BssECI CCNNGG 1 cut(s) 889
BssMI GATC 4 cut(s) 63, 427, 436, 1145
BssNI GRCGYC 1 cut(s) 638
BssT1I CCWWGG 1 cut(s) 889
Bst2UI CCWGG 1 cut(s) 276
Bst4CI ACNGT 7 cut(s) 71, 214, 230, 547, 826, 835, 856
Bst6I CTCTTC 1 cut(s) 991
BstACI GRCGYC 1 cut(s) 638
BstAUI TGTACA 1 cut(s) 111
BstBAI YACGTR 1 cut(s) 992
BstBI TTCGAA 1 cut(s) 505
BstC8I GCNNGC 4 cut(s) 675, 729, 1059, 1156
BstDEI CTNAG 1 cut(s) 1044
BstF5I GGATG 5 cut(s) 675, 680, 919, 1010, 1058
BstFNI CGCG 3 cut(s) 62, 319, 473
BstH2I RGCGCY 1 cut(s) 641
BstHHI GCGC 1 cut(s) 640
BstKTI GATC 4 cut(s) 66, 430, 439, 1148
BstMAI GTCTC 1 cut(s) 438
BstMBI GATC 4 cut(s) 63, 427, 436, 1145
BstMCI CGRYCG 1 cut(s) 810
BstMWI GCNNNNNNNGC 1 cut(s) 479
BstNI CCWGG 1 cut(s) 276
BstNSI RCATGY 1 cut(s) 112
BstSCI CCNGG 3 cut(s) 12, 76, 274
BstSFI CTRYAG 2 cut(s) 725, 834
BstUI CGCG 3 cut(s) 62, 319, 473
BstV1I GCAGC 2 cut(s) 664, 725
BstX2I RGATCY 1 cut(s) 427
BstYI RGATCY 1 cut(s) 427
Bsu15I ATCGAT 1 cut(s) 1144
BsuRI GGCC 2 cut(s) 279, 488
BsuTUI ATCGAT 1 cut(s) 1144
BtgZI GCGATG 1 cut(s) 51
BtsCI GGATG 5 cut(s) 675, 680, 919, 1010, 1058
BtsIMutI CAGTG 3 cut(s) 420, 552, 798
BtuMI TCGCGA 1 cut(s) 62
Cac8I GCNNGC 4 cut(s) 675, 729, 1059, 1156
CciI TCATGA 1 cut(s) 264
CfoI GCGC 1 cut(s) 640
Cfr13I GGNCC 1 cut(s) 547
ClaI ATCGAT 1 cut(s) 1144
Csp6I GTAC 4 cut(s) 112, 366, 840, 1096
CviAII CATG 6 cut(s) 109, 265, 331, 373, 925, 935
CviQI GTAC 4 cut(s) 112, 366, 840, 1096
DdeI CTNAG 1 cut(s) 1044
DinI GGCGCC 1 cut(s) 639
DpnI GATC 4 cut(s) 65, 429, 438, 1147
DpnII GATC 4 cut(s) 63, 427, 436, 1145
EaeI YGGCCR 1 cut(s) 277
Eam1104I CTCTTC 1 cut(s) 991
EarI CTCTTC 1 cut(s) 991
Eco130I CCWWGG 1 cut(s) 889
Eco147I AGGCCT 1 cut(s) 488
Eco31I GGTCTC 1 cut(s) 438
Eco32I GATATC 1 cut(s) 1142
Eco47I GGWCC 1 cut(s) 547
Eco57I CTGAAG 2 cut(s) 444, 1041
Eco72I CACGTG 1 cut(s) 992
EcoRII CCWGG 1 cut(s) 274
EcoRV GATATC 1 cut(s) 1142
EcoT14I CCWWGG 1 cut(s) 889
EcoT22I ATGCAT 1 cut(s) 930
EgeI GGCGCC 1 cut(s) 639
EheI GGCGCC 1 cut(s) 639
ErhI CCWWGG 1 cut(s) 889
FaeI CATG 6 cut(s) 112, 268, 334, 376, 928, 938
FaqI GGGAC 2 cut(s) 533, 1025
FatI CATG 6 cut(s) 108, 264, 330, 372, 924, 934
FblI GTMKAC 2 cut(s) 351, 756
Fnu4HI GCNGC 3 cut(s) 641, 678, 739
FokI GGATG 5 cut(s) 667, 682, 906, 997, 1065
Fsp4HI GCNGC 3 cut(s) 641, 678, 739
FspBI CTAG 2 cut(s) 621, 1155
GlaI GCGC 1 cut(s) 639
GluI GCNGC 3 cut(s) 641, 678, 739
GsaI CCCAGC 1 cut(s) 1019
HaeII RGCGCY 1 cut(s) 641
HaeIII GGCC 2 cut(s) 279, 488
HapII CCGG 4 cut(s) 13, 78, 198, 810
HhaI GCGC 1 cut(s) 640
Hin1I GRCGYC 1 cut(s) 638
Hin1II CATG 6 cut(s) 112, 268, 334, 376, 928, 938
Hin6I GCGC 1 cut(s) 638
HinP1I GCGC 1 cut(s) 638
HincII GTYRAC 4 cut(s) 127, 352, 718, 859
HindII GTYRAC 4 cut(s) 127, 352, 718, 859
HpaII CCGG 4 cut(s) 13, 78, 198, 810
HphI GGTGA 7 cut(s) 134, 178, 484, 571, 697, 859, 1118
Hpy166II GTNNAC 6 cut(s) 127, 352, 368, 718, 757, 859
Hpy188I TCNGA 7 cut(s) 240, 246, 312, 443, 562, 905, 1150
Hpy188III TCNNGA 2 cut(s) 61, 265
Hpy8I GTNNAC 6 cut(s) 127, 352, 368, 718, 757, 859
HpyAV CCTTC 4 cut(s) 38, 458, 499, 838
HpyCH4III ACNGT 7 cut(s) 71, 214, 230, 547, 826, 835, 856
HpyCH4IV ACGT 3 cut(s) 697, 991, 1098
HpyF10VI GCNNNNNNNGC 1 cut(s) 479
HpyF3I CTNAG 1 cut(s) 1044
HpySE526I ACGT 3 cut(s) 697, 991, 1098
Hsp92I GRCGYC 1 cut(s) 638
Hsp92II CATG 6 cut(s) 112, 268, 334, 376, 928, 938
HspAI GCGC 1 cut(s) 638
KasI GGCGCC 1 cut(s) 637
Kzo9I GATC 4 cut(s) 63, 427, 436, 1145
LmnI GCTCC 1 cut(s) 47
Lsp1109I GCAGC 2 cut(s) 664, 725
LweI GCATC 2 cut(s) 660, 689
MaeI CTAG 2 cut(s) 621, 1155
MaeII ACGT 3 cut(s) 697, 991, 1098
MaeIII GTNAC 4 cut(s) 200, 323, 623, 703
MalI GATC 4 cut(s) 65, 429, 438, 1147
MboI GATC 4 cut(s) 63, 427, 436, 1145
MboII GAAGA 6 cut(s) 17, 389, 437, 443, 761, 978
MfeI CAATTG 1 cut(s) 628
MflI RGATCY 1 cut(s) 427
MlsI TGGCCA 1 cut(s) 279
MluCI AATT 9 cut(s) 116, 192, 359, 393, 409, 588, 628, 973, 1003
MluNI TGGCCA 1 cut(s) 279
Mly113I GGCGCC 1 cut(s) 638
MlyI GAGTC 5 cut(s) 235, 307, 347, 977, 1047
MmeI TCCRAC 3 cut(s) 199, 854, 883
MnlI CCTC 4 cut(s) 166, 169, 757, 778
Mox20I TGGCCA 1 cut(s) 279
Mph1103I ATGCAT 1 cut(s) 930
MroXI GAANNNNTTC 2 cut(s) 501, 825
MscI TGGCCA 1 cut(s) 279
MseI TTAA 2 cut(s) 686, 1002
MslI CAYNNNNRTG 1 cut(s) 933
Msp20I TGGCCA 1 cut(s) 279
MspA1I CMGCKG 4 cut(s) 132, 458, 513, 1019
MspI CCGG 4 cut(s) 13, 78, 198, 810
MspR9I CCNGG 3 cut(s) 14, 78, 276
MunI CAATTG 1 cut(s) 628
MvaI CCWGG 1 cut(s) 276
MvnI CGCG 3 cut(s) 62, 319, 473
MwoI GCNNNNNNNGC 1 cut(s) 479
NarI GGCGCC 1 cut(s) 638
NciI CCSGG 2 cut(s) 14, 78
NdeII GATC 4 cut(s) 63, 427, 436, 1145
NheI GCTAGC 1 cut(s) 1154
NlaIII CATG 6 cut(s) 112, 268, 334, 376, 928, 938
NlaIV GGNNCC 3 cut(s) 549, 639, 895
NmuCI GTSAC 2 cut(s) 200, 703
NruI TCGCGA 1 cut(s) 62
NsiI ATGCAT 1 cut(s) 930
NspI RCATGY 1 cut(s) 112
NspV TTCGAA 1 cut(s) 505
PagI TCATGA 1 cut(s) 264
PceI AGGCCT 1 cut(s) 488
PciI ACATGT 1 cut(s) 108
PdmI GAANNNNTTC 2 cut(s) 501, 825
PfeI GAWTC 5 cut(s) 17, 307, 461, 557, 1068
PflMI CCANNNNNTGG 1 cut(s) 286
PfoI TCCNGGA 1 cut(s) 76
PkrI GCNGC 3 cut(s) 642, 679, 740
PleI GAGTC 5 cut(s) 235, 307, 347, 977, 1046
PluTI GGCGCC 1 cut(s) 641
PmaCI CACGTG 1 cut(s) 992
PmlI CACGTG 1 cut(s) 992
PpsI GAGTC 5 cut(s) 235, 307, 347, 977, 1046
Ppu21I YACGTR 1 cut(s) 992
PscI ACATGT 1 cut(s) 108
PsiI TTATAA 2 cut(s) 414, 942
Psp1406I AACGTT 1 cut(s) 697
Psp6I CCWGG 1 cut(s) 274
PspCI CACGTG 1 cut(s) 992
PspFI CCCAGC 1 cut(s) 1015
PspGI CCWGG 1 cut(s) 274
PspN4I GGNNCC 3 cut(s) 549, 639, 895
PspPI GGNCC 1 cut(s) 547
PstI CTGCAG 1 cut(s) 729
PsuI RGATCY 1 cut(s) 427
PvuII CAGCTG 2 cut(s) 458, 1019
RruI TCGCGA 1 cut(s) 62
RsaI GTAC 4 cut(s) 113, 367, 841, 1097
RsaNI GTAC 4 cut(s) 112, 366, 840, 1096
RseI CAYNNNNRTG 1 cut(s) 933
SalI GTCGAC 1 cut(s) 350
SaqAI TTAA 2 cut(s) 686, 1002
SatI GCNGC 3 cut(s) 641, 678, 739
Sau3AI GATC 4 cut(s) 63, 427, 436, 1145
Sau96I GGNCC 1 cut(s) 547
SchI GAGTC 5 cut(s) 235, 307, 347, 977, 1047
ScrFI CCNGG 3 cut(s) 14, 78, 276
SfaNI GCATC 2 cut(s) 660, 689
SfcI CTRYAG 2 cut(s) 725, 834
SfoI GGCGCC 1 cut(s) 639
SfuI TTCGAA 1 cut(s) 505
SinI GGWCC 1 cut(s) 547
SmiMI CAYNNNNRTG 1 cut(s) 933
Sse9I AATT 9 cut(s) 116, 192, 359, 393, 409, 588, 628, 973, 1003
SseBI AGGCCT 1 cut(s) 488
SsiI CCGC 7 cut(s) 132, 151, 164, 317, 406, 513, 641
SspDI GGCGCC 1 cut(s) 637
SspMI CTAG 2 cut(s) 621, 1155
StuI AGGCCT 1 cut(s) 488
StyD4I CCNGG 3 cut(s) 12, 76, 274
StyI CCWWGG 1 cut(s) 889
TaaI ACNGT 7 cut(s) 71, 214, 230, 547, 826, 835, 856
TaiI ACGT 3 cut(s) 700, 994, 1101
TaqI TCGA 5 cut(s) 351, 505, 792, 1138, 1144
TasI AATT 9 cut(s) 116, 192, 359, 393, 409, 588, 628, 973, 1003
TatI WGTACW 1 cut(s) 111
TauI GCSGC 1 cut(s) 643
TfiI GAWTC 5 cut(s) 17, 307, 461, 557, 1068
Tru1I TTAA 2 cut(s) 686, 1002
Tru9I TTAA 2 cut(s) 686, 1002
TscAI CASTG 3 cut(s) 427, 559, 805
TseFI GTSAC 2 cut(s) 200, 703
TseI GCWGC 2 cut(s) 677, 738
Tsp45I GTSAC 2 cut(s) 200, 703
TspDTI ATGAA 4 cut(s) 389, 834, 923, 1136
TspGWI ACGGA 2 cut(s) 10, 1079
TspRI CASTG 3 cut(s) 427, 559, 805
Van91I CCANNNNNTGG 1 cut(s) 286
VpaK11BI GGWCC 1 cut(s) 547
XapI RAATTY 2 cut(s) 116, 359
XceI RCATGY 1 cut(s) 112
XmiI GTMKAC 2 cut(s) 351, 756
XmnI GAANNNNTTC 2 cut(s) 501, 825
XspI CTAG 2 cut(s) 621, 1155
Zsp2I ATGCAT 1 cut(s) 930
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.