Rh6DG305600

Lignin degradation and detoxification of lignin-derived products

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Reverse (-)
50586257 .. 50588261
2005 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG305600.1

Sequence Viewer

Length: 1224 bp
ATGGAAGATTACCGGGATTCCGTAATCTGGGGGGGCGATGTTGAAGGAGCAACTTCTTTCGCGATCAACGGTTATCCCGGACAGCTTGAAACTCCTTGTGATAATGACATGTACAAATTTGTTGTTCACAGCGGAAAAAATTACCATCTCCGCATAATCAATGCGGTGATGGAGGAGGAAATGTTCTTTGCAATTTCCGGTCACAACTTCACGGTTGTTGGACTTGACGGTGCATATCTGACTCCGATACCCACAAACTACATCACGATAACTCCTGGCCAAACGATGGACATATTGCTCACTACGAATCAGACTCCGCGTAGTTACTACATGGGTGGAAAGGCTTTTGTCGACTCCAAATTTGGTACACCCATGAACTCCACAACAAGAGCAATTCTTCAATACCGCAATTATAAAGGCACTGAAACTCCAGTTGATCTTGGAGACCTTCTTCCAGCTGATTCAAAAAACGCGAGTTATGCAAAGGCCTTCACCGAAAGAGTTCGAACCAGCGGATTGACAGGCAACGATGATTACCCGATTACGGTCCCCACTGATTCTGAAATCAATAAGAACTTCACCATCACAATTTCTGTGAATACGCTTCCTTGTCCATATCCTAGTAACAATTGCACGGCGCCGCAAAATTATAATGCAACTTGGACAGGGATGCACGCTGCATCCTTAAACAACCAACGTTTCGTCACCCAAAATGTCAACATACTGCAGGCATATCGCTGCAACATAGAAGATGTCTACACGGAGGATTTCCCAGACAGACCAGAGGAGTTCGACTACACTGGGGCGACCGGAAATAATGAAACAGTTCCAACTGTAGGTACGAAGGTGATGACAGTTGACTATGGAGAAGCAGTTGAAATAGTTTTCCAAGGAACCAATGTCGGAAACGCAGAGAACCATCCCATGCATATTCATGGTTATAACTTCTATCTGGTTGGGAGTGATGATGGCAATTTCAACTACTCTTCACGTGAAACTTTTAATTTGACATCCCCAGCTGAAGCCAATACCTTTGGAGTCCCTAAGAATGGATGGCTCGCTGTTAGATTCTGGGCTAACAATCCTGGAGTGTGGTTTCTACATTGCCATTTGGAAAGGCATGCTTCCTGGGGTATGGCCGGAGTACTCATCGTGAAGAATACAACTACTGACGTAAAACAAAGTCTTTTGGATCCCCCTGCAGGCTACCCCCCTTGTCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

407

Amino Acids

45.11

Weight (kDa)

4.86

Isoelectric Point (pI)

36.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase PF00394 17 - 137 1.5e-27 Multicopper oxidase
Cu-oxidase_2 PF07731 258 - 387 1.7e-39 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 414, 651, 942
AccB1I GGYRCC 1 cut(s) 637
AccB7I CCANNNNNTGG 1 cut(s) 286
AccI GTMKAC 2 cut(s) 351, 756
AccII CGCG 3 cut(s) 62, 319, 473
AciI CCGC 7 cut(s) 132, 151, 164, 317, 406, 513, 641
AclI AACGTT 1 cut(s) 697
AclWI GGATC 2 cut(s) 1187, 1200
AcoI YGGCCR 2 cut(s) 277, 1137
AcsI RAATTY 2 cut(s) 116, 359
AcuI CTGAAG 1 cut(s) 1041
AcvI CACGTG 1 cut(s) 992
AcyI GRCGYC 1 cut(s) 638
AfaI GTAC 4 cut(s) 113, 367, 841, 1146
AfiI CCNNNNNNNGG 6 cut(s) 27, 286, 544, 836, 1049, 1202
AflIII ACRYGT 1 cut(s) 108
AgsI TTSAA 6 cut(s) 44, 89, 401, 465, 878, 979
AjnI CCWGG 3 cut(s) 274, 1084, 1127
AloI GAACNNNNNNTCC 2 cut(s) 167, 199
AluBI AGCT 3 cut(s) 85, 458, 1019
AluI AGCT 3 cut(s) 85, 458, 1019
Alw26I GTCTC 1 cut(s) 438
AlwI GGATC 2 cut(s) 1187, 1200
AoxI GGCC 3 cut(s) 277, 486, 1137
ApeKI GCWGC 2 cut(s) 677, 738
ApoI RAATTY 2 cut(s) 116, 359
ArsI GACNNNNNNTTYG 2 cut(s) 344, 376
Asp700I GAANNNNTTC 2 cut(s) 501, 825
AspLEI GCGC 1 cut(s) 640
AspS9I GGNCC 1 cut(s) 547
AsuC2I CCSGG 2 cut(s) 14, 78
AsuHPI GGTGA 5 cut(s) 178, 484, 571, 697, 859
AsuII TTCGAA 1 cut(s) 505
AvaII GGWCC 1 cut(s) 547
BaeI ACNNNNGTAYC 2 cut(s) 831, 864
BalI TGGCCA 1 cut(s) 279
BamHI GGATCC 1 cut(s) 1192
BanI GGYRCC 1 cut(s) 637
BbrPI CACGTG 1 cut(s) 992
BbvI GCAGC 2 cut(s) 664, 725
BccI CCATC 7 cut(s) 153, 163, 280, 590, 927, 962, 1047
BceAI ACGGC 1 cut(s) 651
BcgI CGANNNNNNTGC 2 cut(s) 716, 750
BciT130I CCWGG 3 cut(s) 276, 1086, 1129
BcnI CCSGG 2 cut(s) 14, 78
BcoDI GTCTC 1 cut(s) 438
BfaI CTAG 1 cut(s) 621
BfmI CTRYAG 3 cut(s) 725, 834, 1200
BfoI RGCGCY 1 cut(s) 641
BisI GCNGC 3 cut(s) 641, 678, 739
BlsI GCNGC 3 cut(s) 642, 679, 740
BmcAI AGTACT 1 cut(s) 1146
Bme1390I CCNGG 5 cut(s) 14, 78, 276, 1086, 1129
Bme18I GGWCC 1 cut(s) 547
BmgT120I GGNCC 1 cut(s) 547
BmiI GGNNCC 4 cut(s) 549, 639, 895, 1194
BmrFI CCNGG 5 cut(s) 14, 78, 276, 1086, 1129
BmrI ACTGGG 1 cut(s) 810
BmsI GCATC 2 cut(s) 660, 689
BmuI ACTGGG 1 cut(s) 810
BpmI CTGGAG 2 cut(s) 414, 1107
Bpu14I TTCGAA 1 cut(s) 505
BpuMI CCSGG 2 cut(s) 14, 78
BsaAI YACGTR 1 cut(s) 992
BsaHI GRCGYC 1 cut(s) 638
BsaI GGTCTC 1 cut(s) 438
BsaJI CCNNGG 2 cut(s) 889, 1128
BsaWI WCCGGW 2 cut(s) 197, 809
BsaXI ACNNNNNCTCC 8 cut(s) 167, 197, 256, 286, 412, 442, 858, 888
Bsc4I CCNNNNNNNGG 6 cut(s) 27, 286, 544, 836, 1049, 1202
Bse1I ACTGG 2 cut(s) 431, 805
Bse3DI GCAATG 1 cut(s) 1102
BseBI CCWGG 3 cut(s) 276, 1086, 1129
BseDI CCNNGG 2 cut(s) 889, 1128
BseGI GGATG 5 cut(s) 675, 680, 919, 1010, 1058
BseLI CCNNNNNNNGG 6 cut(s) 27, 286, 544, 836, 1049, 1202
BseMI GCAATG 1 cut(s) 1102
BseNI ACTGG 2 cut(s) 431, 805
BseRI GAGGAG 2 cut(s) 188, 800
BseXI GCAGC 2 cut(s) 664, 725
BseYI CCCAGC 1 cut(s) 1015
Bsh1236I CGCG 3 cut(s) 62, 319, 473
Bsh1285I CGRYCG 1 cut(s) 810
BshFI GGCC 3 cut(s) 279, 488, 1139
BshNI GGYRCC 1 cut(s) 637
BsiEI CGRYCG 1 cut(s) 810
BsiSI CCGG 5 cut(s) 13, 78, 198, 810, 1140
BslFI GGGAC 3 cut(s) 533, 1025, 1203
BslI CCNNNNNNNGG 6 cut(s) 27, 286, 544, 836, 1049, 1202
BsmAI GTCTC 1 cut(s) 438
BsmFI GGGAC 3 cut(s) 533, 1025, 1203
BsnI GGCC 3 cut(s) 279, 488, 1139
Bso31I GGTCTC 1 cut(s) 438
Bsp119I TTCGAA 1 cut(s) 505
Bsp1407I TGTACA 1 cut(s) 111
Bsp143I GATC 3 cut(s) 63, 436, 1192
Bsp68I TCGCGA 1 cut(s) 62
BspACI CCGC 7 cut(s) 132, 151, 164, 317, 406, 513, 641
BspANI GGCC 3 cut(s) 279, 488, 1139
BspFNI CGCG 3 cut(s) 62, 319, 473
BspLI GGNNCC 4 cut(s) 549, 639, 895, 1194
BspMAI CTGCAG 2 cut(s) 729, 1204
BspPI GGATC 2 cut(s) 1187, 1200
BspT104I TTCGAA 1 cut(s) 505
BspT107I GGYRCC 1 cut(s) 637
BspTNI GGTCTC 1 cut(s) 438
BsrDI GCAATG 1 cut(s) 1102
BsrGI TGTACA 1 cut(s) 111
BsrI ACTGG 2 cut(s) 431, 805
BssECI CCNNGG 2 cut(s) 889, 1128
BssMI GATC 3 cut(s) 63, 436, 1192
BssNI GRCGYC 1 cut(s) 638
BssT1I CCWWGG 1 cut(s) 889
Bst2UI CCWGG 3 cut(s) 276, 1086, 1129
Bst4CI ACNGT 7 cut(s) 71, 214, 230, 547, 826, 835, 856
Bst6I CTCTTC 1 cut(s) 991
BstACI GRCGYC 1 cut(s) 638
BstAUI TGTACA 1 cut(s) 111
BstBAI YACGTR 1 cut(s) 992
BstBI TTCGAA 1 cut(s) 505
BstC8I GCNNGC 5 cut(s) 675, 729, 1059, 1122, 1204
BstDEI CTNAG 1 cut(s) 1044
BstF5I GGATG 5 cut(s) 675, 680, 919, 1010, 1058
BstFNI CGCG 3 cut(s) 62, 319, 473
BstH2I RGCGCY 1 cut(s) 641
BstHHI GCGC 1 cut(s) 640
BstKTI GATC 3 cut(s) 66, 439, 1195
BstMAI GTCTC 1 cut(s) 438
BstMBI GATC 3 cut(s) 63, 436, 1192
BstMCI CGRYCG 1 cut(s) 810
BstMWI GCNNNNNNNGC 1 cut(s) 479
BstNI CCWGG 3 cut(s) 276, 1086, 1129
BstNSI RCATGY 2 cut(s) 112, 1124
BstSCI CCNGG 5 cut(s) 12, 76, 274, 1084, 1127
BstSFI CTRYAG 3 cut(s) 725, 834, 1200
BstUI CGCG 3 cut(s) 62, 319, 473
BstV1I GCAGC 2 cut(s) 664, 725
BstX2I RGATCY 1 cut(s) 1192
BstYI RGATCY 1 cut(s) 1192
BsuRI GGCC 3 cut(s) 279, 488, 1139
BtgZI GCGATG 1 cut(s) 51
BtsCI GGATG 5 cut(s) 675, 680, 919, 1010, 1058
BtsIMutI CAGTG 3 cut(s) 420, 552, 798
BtuMI TCGCGA 1 cut(s) 62
Cac8I GCNNGC 5 cut(s) 675, 729, 1059, 1122, 1204
CfoI GCGC 1 cut(s) 640
Cfr13I GGNCC 1 cut(s) 547
Csp6I GTAC 4 cut(s) 112, 366, 840, 1145
CviAII CATG 6 cut(s) 109, 331, 373, 925, 935, 1121
CviQI GTAC 4 cut(s) 112, 366, 840, 1145
DdeI CTNAG 1 cut(s) 1044
DinI GGCGCC 1 cut(s) 639
DpnI GATC 3 cut(s) 65, 438, 1194
DpnII GATC 3 cut(s) 63, 436, 1192
EaeI YGGCCR 2 cut(s) 277, 1137
Eam1104I CTCTTC 1 cut(s) 991
EarI CTCTTC 1 cut(s) 991
Eco130I CCWWGG 1 cut(s) 889
Eco147I AGGCCT 1 cut(s) 488
Eco31I GGTCTC 1 cut(s) 438
Eco47I GGWCC 1 cut(s) 547
Eco57I CTGAAG 1 cut(s) 1041
Eco72I CACGTG 1 cut(s) 992
EcoRII CCWGG 3 cut(s) 274, 1084, 1127
EcoT14I CCWWGG 1 cut(s) 889
EcoT22I ATGCAT 1 cut(s) 930
EgeI GGCGCC 1 cut(s) 639
EheI GGCGCC 1 cut(s) 639
ErhI CCWWGG 1 cut(s) 889
FaeI CATG 6 cut(s) 112, 334, 376, 928, 938, 1124
FalI AAGNNNNNCTT 2 cut(s) 1108, 1140
FaqI GGGAC 3 cut(s) 533, 1025, 1203
FatI CATG 6 cut(s) 108, 330, 372, 924, 934, 1120
FblI GTMKAC 2 cut(s) 351, 756
Fnu4HI GCNGC 3 cut(s) 641, 678, 739
FokI GGATG 5 cut(s) 667, 682, 906, 997, 1065
Fsp4HI GCNGC 3 cut(s) 641, 678, 739
FspBI CTAG 1 cut(s) 621
GlaI GCGC 1 cut(s) 639
GluI GCNGC 3 cut(s) 641, 678, 739
GsaI CCCAGC 1 cut(s) 1019
GsuI CTGGAG 2 cut(s) 414, 1107
HaeII RGCGCY 1 cut(s) 641
HaeIII GGCC 3 cut(s) 279, 488, 1139
HapII CCGG 5 cut(s) 13, 78, 198, 810, 1140
HhaI GCGC 1 cut(s) 640
Hin1I GRCGYC 1 cut(s) 638
Hin1II CATG 6 cut(s) 112, 334, 376, 928, 938, 1124
Hin6I GCGC 1 cut(s) 638
HinP1I GCGC 1 cut(s) 638
HincII GTYRAC 3 cut(s) 352, 718, 859
HindII GTYRAC 3 cut(s) 352, 718, 859
HinfI GANTC 9 cut(s) 17, 241, 307, 313, 353, 461, 557, 1038, 1068
HpaII CCGG 5 cut(s) 13, 78, 198, 810, 1140
HphI GGTGA 5 cut(s) 178, 484, 571, 697, 859
Hpy166II GTNNAC 6 cut(s) 127, 352, 368, 718, 757, 859
Hpy188I TCNGA 5 cut(s) 240, 246, 312, 562, 905
Hpy188III TCNNGA 3 cut(s) 61, 265, 1153
Hpy8I GTNNAC 6 cut(s) 127, 352, 368, 718, 757, 859
HpyAV CCTTC 4 cut(s) 38, 458, 499, 838
HpyCH4III ACNGT 7 cut(s) 71, 214, 230, 547, 826, 835, 856
HpyCH4IV ACGT 3 cut(s) 697, 991, 1173
HpyF10VI GCNNNNNNNGC 1 cut(s) 479
HpyF3I CTNAG 1 cut(s) 1044
HpySE526I ACGT 3 cut(s) 697, 991, 1173
Hsp92I GRCGYC 1 cut(s) 638
Hsp92II CATG 6 cut(s) 112, 334, 376, 928, 938, 1124
HspAI GCGC 1 cut(s) 638
KasI GGCGCC 1 cut(s) 637
Kzo9I GATC 3 cut(s) 63, 436, 1192
LmnI GCTCC 1 cut(s) 47
Lsp1109I GCAGC 2 cut(s) 664, 725
LweI GCATC 2 cut(s) 660, 689
MaeI CTAG 1 cut(s) 621
MaeII ACGT 3 cut(s) 697, 991, 1173
MaeIII GTNAC 4 cut(s) 200, 323, 623, 703
MalI GATC 3 cut(s) 65, 438, 1194
MboI GATC 3 cut(s) 63, 436, 1192
MboII GAAGA 6 cut(s) 17, 389, 443, 761, 978, 1168
MfeI CAATTG 1 cut(s) 628
MflI RGATCY 1 cut(s) 1192
MlsI TGGCCA 1 cut(s) 279
MluNI TGGCCA 1 cut(s) 279
Mly113I GGCGCC 1 cut(s) 638
MlyI GAGTC 4 cut(s) 235, 307, 347, 1047
MmeI TCCRAC 3 cut(s) 199, 854, 883
MnlI CCTC 4 cut(s) 166, 169, 757, 778
Mox20I TGGCCA 1 cut(s) 279
Mph1103I ATGCAT 1 cut(s) 930
MroXI GAANNNNTTC 2 cut(s) 501, 825
MscI TGGCCA 1 cut(s) 279
MseI TTAA 2 cut(s) 686, 1002
MslI CAYNNNNRTG 1 cut(s) 933
Msp20I TGGCCA 1 cut(s) 279
MspA1I CMGCKG 4 cut(s) 132, 458, 513, 1019
MspI CCGG 5 cut(s) 13, 78, 198, 810, 1140
MspR9I CCNGG 5 cut(s) 14, 78, 276, 1086, 1129
MunI CAATTG 1 cut(s) 628
MvaI CCWGG 3 cut(s) 276, 1086, 1129
MvnI CGCG 3 cut(s) 62, 319, 473
MwoI GCNNNNNNNGC 1 cut(s) 479
NarI GGCGCC 1 cut(s) 638
NciI CCSGG 2 cut(s) 14, 78
NdeII GATC 3 cut(s) 63, 436, 1192
NlaIII CATG 6 cut(s) 112, 334, 376, 928, 938, 1124
NlaIV GGNNCC 4 cut(s) 549, 639, 895, 1194
NmuCI GTSAC 2 cut(s) 200, 703
NruI TCGCGA 1 cut(s) 62
NsiI ATGCAT 1 cut(s) 930
NspI RCATGY 2 cut(s) 112, 1124
NspV TTCGAA 1 cut(s) 505
PaeI GCATGC 1 cut(s) 1124
PceI AGGCCT 1 cut(s) 488
PciI ACATGT 1 cut(s) 108
PdmI GAANNNNTTC 2 cut(s) 501, 825
PfeI GAWTC 5 cut(s) 17, 307, 461, 557, 1068
PflMI CCANNNNNTGG 1 cut(s) 286
PfoI TCCNGGA 2 cut(s) 76, 1084
PkrI GCNGC 3 cut(s) 642, 679, 740
PleI GAGTC 4 cut(s) 235, 307, 347, 1046
PluTI GGCGCC 1 cut(s) 641
PmaCI CACGTG 1 cut(s) 992
PmlI CACGTG 1 cut(s) 992
PpsI GAGTC 4 cut(s) 235, 307, 347, 1046
Ppu21I YACGTR 1 cut(s) 992
PscI ACATGT 1 cut(s) 108
PsiI TTATAA 3 cut(s) 414, 651, 942
Psp1406I AACGTT 1 cut(s) 697
Psp6I CCWGG 3 cut(s) 274, 1084, 1127
PspCI CACGTG 1 cut(s) 992
PspFI CCCAGC 1 cut(s) 1015
PspGI CCWGG 3 cut(s) 274, 1084, 1127
PspN4I GGNNCC 4 cut(s) 549, 639, 895, 1194
PspPI GGNCC 1 cut(s) 547
PstI CTGCAG 2 cut(s) 729, 1204
PsuI RGATCY 1 cut(s) 1192
PvuII CAGCTG 2 cut(s) 458, 1019
RruI TCGCGA 1 cut(s) 62
RsaI GTAC 4 cut(s) 113, 367, 841, 1146
RsaNI GTAC 4 cut(s) 112, 366, 840, 1145
RseI CAYNNNNRTG 1 cut(s) 933
SalI GTCGAC 1 cut(s) 350
SaqAI TTAA 2 cut(s) 686, 1002
SatI GCNGC 3 cut(s) 641, 678, 739
Sau3AI GATC 3 cut(s) 63, 436, 1192
Sau96I GGNCC 1 cut(s) 547
SbfI CCTGCAGG 1 cut(s) 1204
ScaI AGTACT 1 cut(s) 1146
SchI GAGTC 4 cut(s) 235, 307, 347, 1047
ScrFI CCNGG 5 cut(s) 14, 78, 276, 1086, 1129
SdaI CCTGCAGG 1 cut(s) 1204
SfaNI GCATC 2 cut(s) 660, 689
SfcI CTRYAG 3 cut(s) 725, 834, 1200
SfoI GGCGCC 1 cut(s) 639
SfuI TTCGAA 1 cut(s) 505
SinI GGWCC 1 cut(s) 547
SmiMI CAYNNNNRTG 1 cut(s) 933
SphI GCATGC 1 cut(s) 1124
Sse8387I CCTGCAGG 1 cut(s) 1204
SseBI AGGCCT 1 cut(s) 488
SsiI CCGC 7 cut(s) 132, 151, 164, 317, 406, 513, 641
SspDI GGCGCC 1 cut(s) 637
SspMI CTAG 1 cut(s) 621
StuI AGGCCT 1 cut(s) 488
StyD4I CCNGG 5 cut(s) 12, 76, 274, 1084, 1127
StyI CCWWGG 1 cut(s) 889
TaaI ACNGT 7 cut(s) 71, 214, 230, 547, 826, 835, 856
TaiI ACGT 3 cut(s) 700, 994, 1176
TaqI TCGA 3 cut(s) 351, 505, 792
TatI WGTACW 2 cut(s) 111, 1144
TauI GCSGC 1 cut(s) 643
TfiI GAWTC 5 cut(s) 17, 307, 461, 557, 1068
Tru1I TTAA 2 cut(s) 686, 1002
Tru9I TTAA 2 cut(s) 686, 1002
TscAI CASTG 3 cut(s) 427, 559, 805
TseFI GTSAC 2 cut(s) 200, 703
TseI GCWGC 2 cut(s) 677, 738
Tsp45I GTSAC 2 cut(s) 200, 703
TspDTI ATGAA 3 cut(s) 389, 834, 923
TspGWI ACGGA 2 cut(s) 10, 776
TspRI CASTG 3 cut(s) 427, 559, 805
Van91I CCANNNNNTGG 1 cut(s) 286
VpaK11BI GGWCC 1 cut(s) 547
XapI RAATTY 2 cut(s) 116, 359
XceI RCATGY 2 cut(s) 112, 1124
XmiI GTMKAC 2 cut(s) 351, 756
XmnI GAANNNNTTC 2 cut(s) 501, 825
XspI CTAG 1 cut(s) 621
ZrmI AGTACT 1 cut(s) 1146
Zsp2I ATGCAT 1 cut(s) 930
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.