Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0006914

Physical Location & Seq

Genomic Coordinates Forward (+)

5663079 .. 5666745

Gene Structure 3667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G051800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGCAATACCACTCTCTAAAACATCCTTCCAAACAAGTTGTGTTTTTGTATCTCTCTTTGTTTGTTTGTCTGCCTCTATCCATTTCCATTTGTAACTTCGCAGAAGATGGAGCTGCGACCAGAGGCATGTTTGTGTTTGGAAGCTCTCTGGTCGACAATGGCAACAATAACTTCTTTGAAAGCAGGGCTAAAGCCGATTATTTGCCATATGGGATTGATTTCCCGAACGGACCTTCTGGGAGATTCACAAATGGCAAAAATGTAGTTGACCTTCTTGGTGACCAACTCAAGCTTCCTTCCTTCATCCCACCTTCTAAAGACCCTTCAACTAAGGGAAGTAAAATTGTTCATGGAGTCAACCATGCCTCTGGCTCTTCCGGTATATTAGATGATACCGGCTCAATTGTGGGCAATGTTATCAGTTTGAGCCAGCAAATCCGGGACTTCGAGGAGGAGACATTGCCAGAGCTAGAAGCTGAGCTGGGGTGCAAAAGCTCTGAATCACTTCCAAGCTACTTGTTTGTTGTCGGAGTTGGTGGGAACGATTACATGTTCAACTACTTCGTCAGGAGATCCTACCTCCAATTTGGCCTTGAAGCCTTCACTAGAACTCTCATAGCCTCTCTGGCTCAAAAACTCCAGAAATTGTATAGTTTGGGAGGTCGAAAATTTGTCGTAATGTCAATAAATCCACTAGGCTACAGTCCCGTGCTTAACAGACCAAATTTTATAGGCAGCCCTCGAGCTCTGAGCCAAGCAGCTCAGATCTACAACGTTCAGTTGAAGACACTGCTAGATGCTCTCAAAAGAAGCATGCCTGACTTCAATTTTGCTTTGGTCAACACATATAATATTATGACTAATATCATCCAGAATCCGGCTTCCACAGGCTTTGAAGACACAAGAAACCCTTGTTGCAAAGTGACCTCCCAGATTCAAGGTGGAAATGGAGTATTCTGCGAAAGAGGGGGGGAAACAAGTGCGAACAGGGCGAGAAATGTGTTCTTTGATGGGTTGCATCCAACAGAAGCTTTAAATTTTCAAATAGCAAGCAAGGCCTTTGCTTCCACTCTTGAATTTGATGTTTATCCAATTAATGTCAGACAACTAGCTCAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

374

Amino Acids

40.93

Weight (kDa)

7.59

Isoelectric Point (pI)

31.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g12400
malus_domestica	MD05G1039300.v1.1
prunus_persica	Prupe.8G051800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0272471 RchiOBHm_Chr6g0272551
rosa_laevigata	RLG00000013667
rosa_multiflora	Rmu_sc0002847.1_g000001 Rmu_sc0002847.1_g000006 Rmu_sc0003080.1_g000018 Rmu_sc0004003.1_g000020 Rmu_sc0004904.1_g000002
rosa_roxburghii	Rroxscaffold_7G00196160
rosa_rugosa	Rorug06G0069900 Rorug06G0069900 Rorug06G0070000
rosa_samantha	Rh6AG185600 Rh6AG186300 Rh6BG188700 Rh6BG189000 Rh6BG189400 Rh6CG186800 Rh6CG187200 Rh6DG178400 Rh6DG178900
rosa_wichuraiana	Rw0G015690 Rw6G016050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	153
AclI	AACGTT	1 cut(s)	774
AclWI	GGATC	1 cut(s)	567
AcsI	RAATTY	4 cut(s)	668, 724, 1036, 1076
AfiI	CCNNNNNNNGG	1 cut(s)	877
AflIII	ACRYGT	1 cut(s)	549
AjuI	GAANNNNNNNTTGG	2 cut(s)	276, 308
Alw21I	GWGCWC	1 cut(s)	748
Alw26I	GTCTC	1 cut(s)	449
AlwI	GGATC	1 cut(s)	567
Ama87I	CYCGRG	1 cut(s)	741
AoxI	GGCC	2 cut(s)	589, 1056
ApeKI	GCWGC	3 cut(s)	113, 735, 758
ApoI	RAATTY	4 cut(s)	668, 724, 1036, 1076
ArsI	GACNNNNNNTTYG	2 cut(s)	812, 844
AseI	ATTAAT	1 cut(s)	1095
Asp700I	GAANNNNTTC	1 cut(s)	504
AspS9I	GGNCC	1 cut(s)	230
AsuC2I	CCSGG	1 cut(s)	440
AsuHPI	GGTGA	1 cut(s)	290
AvaI	CYCGRG	1 cut(s)	741
AvaII	GGWCC	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	748
BarI	GAAGNNNNNNTAC	2 cut(s)	255, 287
BbsI	GAAGAC	2 cut(s)	791, 903
Bbv12I	GWGCWC	1 cut(s)	748
BbvI	GCAGC	3 cut(s)	100, 747, 770
BccI	CCATC	2 cut(s)	101, 1004
BcnI	CCSGG	1 cut(s)	440
BcoDI	GTCTC	1 cut(s)	449
BfaI	CTAG	5 cut(s)	470, 606, 695, 794, 1109
BfmI	CTRYAG	1 cut(s)	700
BglI	GCCNNNNNGGC	1 cut(s)	626
BglII	AGATCT	1 cut(s)	765
BisI	GCNGC	3 cut(s)	114, 736, 759
BlpI	GCTNAGC	1 cut(s)	477
BlsI	GCNGC	3 cut(s)	115, 737, 760
Bme1390I	CCNGG	1 cut(s)	440
Bme18I	GGWCC	1 cut(s)	230
BmeT110I	CYCGRG	1 cut(s)	741
BmgT120I	GGNCC	1 cut(s)	230
BmrFI	CCNGG	1 cut(s)	440
BmsI	GCATC	2 cut(s)	787, 1027
BpiI	GAAGAC	2 cut(s)	791, 903
BpmI	CTGGAG	1 cut(s)	623
Bpu1102I	GCTNAGC	1 cut(s)	477
BpuEI	CTTGAG	1 cut(s)	272
BpuMI	CCSGG	1 cut(s)	440
BsaBI	GATNNNNATC	1 cut(s)	1086
BsaWI	WCCGGW	1 cut(s)	377
Bsc4I	CCNNNNNNNGG	1 cut(s)	877
Bse118I	RCCGGY	1 cut(s)	395
Bse3DI	GCAATG	2 cut(s)	418, 458
Bse8I	GATNNNNATC	1 cut(s)	1086
BseGI	GGATG	4 cut(s)	22, 303, 867, 1018
BseJI	GATNNNNATC	1 cut(s)	1086
BseLI	CCNNNNNNNGG	1 cut(s)	877
BseMI	GCAATG	2 cut(s)	418, 458
BseMII	CTCAG	3 cut(s)	468, 740, 776
BseRI	GAGGAG	2 cut(s)	464, 467
BseXI	GCAGC	3 cut(s)	100, 747, 770
BseYI	CCCAGC	1 cut(s)	481
BshFI	GGCC	2 cut(s)	591, 1058
BsiHKAI	GWGCWC	1 cut(s)	748
BsiHKCI	CYCGRG	1 cut(s)	741
BsiSI	CCGG	4 cut(s)	378, 396, 439, 878
BslFI	GGGAC	2 cut(s)	455, 690
BslI	CCNNNNNNNGG	1 cut(s)	877
BsmAI	GTCTC	1 cut(s)	449
BsmFI	GGGAC	2 cut(s)	455, 690
BsnI	GGCC	2 cut(s)	591, 1058
BsoBI	CYCGRG	1 cut(s)	741
Bsp1286I	GDGCHC	1 cut(s)	748
Bsp143I	GATC	2 cut(s)	572, 765
Bsp1720I	GCTNAGC	1 cut(s)	477
BspANI	GGCC	2 cut(s)	591, 1058
BspCNI	CTCAG	3 cut(s)	469, 741, 775
BspPI	GGATC	1 cut(s)	567
BspQI	GCTCTTC	1 cut(s)	379
BsrDI	GCAATG	2 cut(s)	418, 458
BsrFI	RCCGGY	1 cut(s)	395
BssAI	RCCGGY	1 cut(s)	395
BssMI	GATC	2 cut(s)	572, 765
Bst4CI	ACNGT	1 cut(s)	704
Bst6I	CTCTTC	1 cut(s)	379
BstC8I	GCNNGC	3 cut(s)	431, 815, 1051
BstDEI	CTNAG	4 cut(s)	330, 477, 749, 762
BstEII	GGTNACC	1 cut(s)	278
BstF5I	GGATG	4 cut(s)	22, 303, 867, 1018
BstKTI	GATC	2 cut(s)	575, 768
BstMAI	GTCTC	1 cut(s)	449
BstMBI	GATC	2 cut(s)	572, 765
BstMWI	GCNNNNNNNGC	3 cut(s)	626, 989, 1055
BstNSI	RCATGY	3 cut(s)	130, 553, 817
BstPI	GGTNACC	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	438
BstSFI	CTRYAG	1 cut(s)	700
BstV1I	GCAGC	3 cut(s)	100, 747, 770
BstV2I	GAAGAC	2 cut(s)	791, 903
BstX2I	RGATCY	2 cut(s)	572, 765
BstXI	CCANNNNNNTGG	1 cut(s)	368
BstYI	RGATCY	2 cut(s)	572, 765
BsuRI	GGCC	2 cut(s)	591, 1058
BtsCI	GGATG	4 cut(s)	22, 303, 867, 1018
BtsI	GCAGTG	1 cut(s)	788
BtsIMutI	CAGTG	1 cut(s)	788
Cac8I	GCNNGC	3 cut(s)	431, 815, 1051
Cfr10I	RCCGGY	1 cut(s)	395
Cfr13I	GGNCC	1 cut(s)	230
CspCI	CAANNNNNGTGG	2 cut(s)	874, 909
CviAII	CATG	5 cut(s)	127, 350, 362, 550, 814
DdeI	CTNAG	4 cut(s)	330, 477, 749, 762
DpnI	GATC	2 cut(s)	574, 767
DpnII	GATC	2 cut(s)	572, 765
DraI	TTTAAA	1 cut(s)	1035
Eam1104I	CTCTTC	1 cut(s)	379
EarI	CTCTTC	1 cut(s)	379
Ecl136II	GAGCTC	1 cut(s)	746
Eco147I	AGGCCT	1 cut(s)	1058
Eco24I	GRGCYC	1 cut(s)	748
Eco47I	GGWCC	1 cut(s)	230
Eco53kI	GAGCTC	1 cut(s)	746
Eco88I	CYCGRG	1 cut(s)	741
Eco91I	GGTNACC	1 cut(s)	278
EcoICRI	GAGCTC	1 cut(s)	746
EcoO65I	GGTNACC	1 cut(s)	278
EcoT38I	GRGCYC	1 cut(s)	748
FaeI	CATG	5 cut(s)	130, 353, 365, 553, 817
FalI	AAGNNNNNCTT	2 cut(s)	895, 927
FaqI	GGGAC	2 cut(s)	455, 690
FatI	CATG	5 cut(s)	126, 349, 361, 549, 813
FauNDI	CATATG	1 cut(s)	208
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	3 cut(s)	114, 736, 759
FokI	GGATG	4 cut(s)	9, 290, 854, 1005
FriOI	GRGCYC	1 cut(s)	748
Fsp4HI	GCNGC	3 cut(s)	114, 736, 759
FspBI	CTAG	5 cut(s)	470, 606, 695, 794, 1109
GluI	GCNGC	3 cut(s)	114, 736, 759
GsaI	CCCAGC	1 cut(s)	485
GsuI	CTGGAG	1 cut(s)	623
HaeIII	GGCC	2 cut(s)	591, 1058
HapII	CCGG	4 cut(s)	378, 396, 439, 878
Hin1II	CATG	5 cut(s)	130, 353, 365, 553, 817
HincII	GTYRAC	4 cut(s)	154, 268, 358, 841
HindII	GTYRAC	4 cut(s)	154, 268, 358, 841
HindIII	AAGCTT	2 cut(s)	290, 1029
HinfI	GANTC	5 cut(s)	243, 354, 500, 874, 934
HpaII	CCGG	4 cut(s)	378, 396, 439, 878
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	4 cut(s)	154, 268, 358, 841
Hpy188I	TCNGA	5 cut(s)	499, 530, 750, 765, 1103
Hpy188III	TCNNGA	5 cut(s)	223, 568, 640, 871, 1073
Hpy8I	GTNNAC	4 cut(s)	154, 268, 358, 841
HpyAV	CCTTC	8 cut(s)	36, 243, 281, 306, 310, 321, 333, 610
HpyCH4III	ACNGT	1 cut(s)	704
HpyCH4IV	ACGT	1 cut(s)	774
HpyCH4V	TGCA	4 cut(s)	4, 489, 918, 1018
HpyF10VI	GCNNNNNNNGC	3 cut(s)	626, 989, 1055
HpyF3I	CTNAG	4 cut(s)	330, 477, 749, 762
HpySE526I	ACGT	1 cut(s)	774
Hsp92II	CATG	5 cut(s)	130, 353, 365, 553, 817
Kzo9I	GATC	2 cut(s)	572, 765
LguI	GCTCTTC	1 cut(s)	379
LmnI	GCTCC	1 cut(s)	110
Lsp1109I	GCAGC	3 cut(s)	100, 747, 770
LweI	GCATC	2 cut(s)	787, 1027
MaeI	CTAG	5 cut(s)	470, 606, 695, 794, 1109
MaeII	ACGT	1 cut(s)	774
MaeIII	GTNAC	3 cut(s)	92, 278, 922
MalI	GATC	2 cut(s)	574, 767
MboI	GATC	2 cut(s)	572, 765
MboII	GAAGA	4 cut(s)	116, 366, 796, 908
MfeI	CAATTG	1 cut(s)	402
MflI	RGATCY	2 cut(s)	572, 765
MhlI	GDGCHC	1 cut(s)	748
MlyI	GAGTC	1 cut(s)	363
MmeI	TCCRAC	2 cut(s)	508, 1046
MroXI	GAANNNNTTC	1 cut(s)	504
MseI	TTAA	3 cut(s)	714, 1034, 1095
MslI	CAYNNNNRTG	1 cut(s)	131
MspI	CCGG	4 cut(s)	378, 396, 439, 878
MspR9I	CCNGG	1 cut(s)	440
MunI	CAATTG	1 cut(s)	402
MwoI	GCNNNNNNNGC	3 cut(s)	626, 989, 1055
NciI	CCSGG	1 cut(s)	440
NdeI	CATATG	1 cut(s)	208
NdeII	GATC	2 cut(s)	572, 765
NlaIII	CATG	5 cut(s)	130, 353, 365, 553, 817
NmuCI	GTSAC	2 cut(s)	278, 922
NspI	RCATGY	3 cut(s)	130, 553, 817
PaeI	GCATGC	1 cut(s)	817
PaeR7I	CTCGAG	1 cut(s)	741
PceI	AGGCCT	1 cut(s)	1058
PciI	ACATGT	1 cut(s)	549
PciSI	GCTCTTC	1 cut(s)	379
PdmI	GAANNNNTTC	1 cut(s)	504
PfeI	GAWTC	4 cut(s)	243, 500, 874, 934
PfoI	TCCNGGA	1 cut(s)	438
PkrI	GCNGC	3 cut(s)	115, 737, 760
PleI	GAGTC	1 cut(s)	362
PpsI	GAGTC	1 cut(s)	362
PscI	ACATGT	1 cut(s)	549
PshBI	ATTAAT	1 cut(s)	1095
Psp124BI	GAGCTC	1 cut(s)	748
Psp1406I	AACGTT	1 cut(s)	774
PspEI	GGTNACC	1 cut(s)	278
PspFI	CCCAGC	1 cut(s)	481
PspPI	GGNCC	1 cut(s)	230
PspXI	VCTCGAGB	1 cut(s)	741
PsuI	RGATCY	2 cut(s)	572, 765
RseI	CAYNNNNRTG	1 cut(s)	131
SacI	GAGCTC	1 cut(s)	748
SalI	GTCGAC	1 cut(s)	152
SapI	GCTCTTC	1 cut(s)	379
SaqAI	TTAA	3 cut(s)	714, 1034, 1095
SatI	GCNGC	3 cut(s)	114, 736, 759
Sau3AI	GATC	2 cut(s)	572, 765
Sau96I	GGNCC	1 cut(s)	230
SchI	GAGTC	1 cut(s)	363
ScrFI	CCNGG	1 cut(s)	440
SduI	GDGCHC	1 cut(s)	748
SfaNI	GCATC	2 cut(s)	787, 1027
SfcI	CTRYAG	1 cut(s)	700
Sfr274I	CTCGAG	1 cut(s)	741
SinI	GGWCC	1 cut(s)	230
SlaI	CTCGAG	1 cut(s)	741
SmiMI	CAYNNNNRTG	1 cut(s)	131
SmlI	CTYRAG	2 cut(s)	287, 741
SmoI	CTYRAG	2 cut(s)	287, 741
SphI	GCATGC	1 cut(s)	817
SseBI	AGGCCT	1 cut(s)	1058
SspI	AATATT	1 cut(s)	853
SspMI	CTAG	5 cut(s)	470, 606, 695, 794, 1109
SstI	GAGCTC	1 cut(s)	748
StuI	AGGCCT	1 cut(s)	1058
StyD4I	CCNGG	1 cut(s)	438
TaaI	ACNGT	1 cut(s)	704
TaiI	ACGT	1 cut(s)	777
TaqI	TCGA	4 cut(s)	153, 447, 664, 742
TfiI	GAWTC	4 cut(s)	243, 500, 874, 934
Tru1I	TTAA	3 cut(s)	714, 1034, 1095
Tru9I	TTAA	3 cut(s)	714, 1034, 1095
TscAI	CASTG	1 cut(s)	795
TseFI	GTSAC	2 cut(s)	278, 922
TseI	GCWGC	3 cut(s)	113, 735, 758
Tsp45I	GTSAC	2 cut(s)	278, 922
TspDTI	ATGAA	2 cut(s)	292, 338
TspGWI	ACGGA	1 cut(s)	243
TspRI	CASTG	1 cut(s)	795
VpaK11BI	GGWCC	1 cut(s)	230
VspI	ATTAAT	1 cut(s)	1095
XapI	RAATTY	4 cut(s)	668, 724, 1036, 1076
XceI	RCATGY	3 cut(s)	130, 553, 817
XcmI	CCANNNNNNNNNTGG	1 cut(s)	938
XhoI	CTCGAG	1 cut(s)	741
XmiI	GTMKAC	1 cut(s)	153
XmnI	GAANNNNTTC	1 cut(s)	504
XspI	CTAG	5 cut(s)	470, 606, 695, 794, 1109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.