RchiOBHm_Chr6g0272551

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0006914
Physical Location & Seq
Reverse (-)
32917611 .. 32920460
2850 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24451

Sequence Viewer

Length: 1197 bp
ATGTATTTGATCATACATGCATATATATATTTCCATTATTATTTCTCCAACAAGAAGTTCTGGGTCAATATGACAAAAGAAGCTTCAAAACTGGTGTGTTTGTATCTCTCTCTGATATTTGCTTCTGTATCTTCAGCTTCCGCAACCACTGTTACTTGTAGCTTCAAACAAGATGGTAGTGGGAATATGATCCAAGGGATGTTTGTATTCGGAAGCTCTCTGGTGGACAATGGCAACAATAACTTCTTGGAAACCAAGTCCAAAGCCGATTACTTGCCGTATGGAATCGACTTCCCAAATGGAACTTCTGGGAGATTCACAAATGGTAAAAATGTTATTGATCTCCTCGGTGATCAGCTTAAGCTTCTCTTCATTCCACCATTTCAAGACCCCTCCACCAAGGGAAGTAAAATTGTTCATGGTGTCAATCATGCCTCTGGCTCTTCTGGTATCTTAGATGATACAGGATTAGTTGCGGGTAATGCAACGAGCTTGAGTCAACAAGTTAAGGACTTTGAGGCGGTGACACTGGCAGAGTTAGAAGCAGAGCTAGGGTGCAGTAGCTCTCAATCGCTACCAAGCTACTTGATTGTTGTAGGAGTTGGTGGGAATGATTACATGCTCAACTATTTCCTTAGGAAATTGTACCTTCGAATCAGTATTGAAACCTTCACTGCAAATCTCATAGCCTCTCTAGCTCAGAAACTCCAGGAATTGTACATTTTGGGAGGTCGTAAATTCGTGTTAACGTCGCTAATGCCATTAGGCTACAGTCCTGTGATTAACCGGCCAAATCTTATTGGCACCCCATCAGCTCTGAATTACGCAGCTCAGCTCTACAACGCTCACTTGAAGACATTGCTCGACTCTCTCAAAACTCACTTATCCGACTTCAATTTCGTTTTGGTTAACCAATATAACATTATATCTAATCTCACTTACTCTCCTCCTTCCGCTACAGGCTTTAAAGACATAAGCAACCCTTGTTGTACAGTTTCCCTCTCTCAAGGTGGAAATGGAATATCATGCGATAGAGGTGGGAAGGCATGTGAAGATAGGACGGCTTATATGTATTTTGATGGGTTACATCCAACAGAAGCTGTGAACGTTCAAATAGCAACCAAGGCATATGCTTCTACTCACCAGGGCGACGCTTACCCAATCAATGTCAGCCAACTTGCCCAGCTTCAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

398

Amino Acids

43.34

Weight (kDa)

6.7

Isoelectric Point (pI)

33.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 68 - 373 1e-23 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 803
AciI CCGC 4 cut(s) 141, 476, 521, 954
AclI AACGTT 1 cut(s) 1107
AclWI GGATC 1 cut(s) 184
AcoI YGGCCR 1 cut(s) 788
AcsI RAATTY 2 cut(s) 737, 1191
AcuI CTGAAG 1 cut(s) 117
AfaI GTAC 3 cut(s) 647, 719, 991
AflII CTTAAG 1 cut(s) 359
AgsI TTSAA 8 cut(s) 87, 166, 386, 665, 853, 895, 1112, 1190
AjnI CCWGG 2 cut(s) 708, 1143
AjuI GAANNNNNNNTTGG 4 cut(s) 41, 73, 289, 321
AlwI GGATC 1 cut(s) 184
AlwNI CAGNNNCTG 1 cut(s) 1100
AoxI GGCC 1 cut(s) 788
ApeKI GCWGC 1 cut(s) 827
ApoI RAATTY 2 cut(s) 737, 1191
ArsI GACNNNNNNTTYG 2 cut(s) 881, 913
AsuHPI GGTGA 3 cut(s) 362, 535, 1133
AsuII TTCGAA 1 cut(s) 652
AxyI CCTNAGG 1 cut(s) 635
BanI GGYRCC 1 cut(s) 803
BbsI GAAGAC 1 cut(s) 860
BbvI GCAGC 1 cut(s) 839
BccI CCATC 3 cut(s) 167, 817, 1073
BceAI ACGGC 2 cut(s) 262, 1077
BciT130I CCWGG 2 cut(s) 710, 1145
BclI TGATCA 2 cut(s) 9, 352
BfaI CTAG 2 cut(s) 551, 695
BfmI CTRYAG 2 cut(s) 769, 957
BfrI CTTAAG 1 cut(s) 359
BisI GCNGC 1 cut(s) 828
BlpI GCTNAGC 1 cut(s) 831
BlsI GCNGC 1 cut(s) 829
Bme1390I CCNGG 2 cut(s) 710, 1145
BmiI GGNNCC 1 cut(s) 805
BmrFI CCNGG 2 cut(s) 710, 1145
BpiI GAAGAC 1 cut(s) 860
BpmI CTGGAG 1 cut(s) 692
Bpu1102I GCTNAGC 1 cut(s) 831
Bpu14I TTCGAA 1 cut(s) 652
BpuEI CTTGAG 2 cut(s) 514, 990
BsaJI CCNNGG 5 cut(s) 193, 346, 399, 1122, 1144
BsaXI ACNNNNNCTCC 2 cut(s) 928, 958
Bse118I RCCGGY 1 cut(s) 786
Bse1I ACTGG 2 cut(s) 96, 534
Bse21I CCTNAGG 1 cut(s) 635
Bse3DI GCAATG 1 cut(s) 857
BseBI CCWGG 2 cut(s) 710, 1145
BseDI CCNNGG 5 cut(s) 193, 346, 399, 1122, 1144
BseGI GGATG 2 cut(s) 204, 1087
BseMI GCAATG 1 cut(s) 857
BseMII CTCAG 2 cut(s) 713, 845
BseNI ACTGG 2 cut(s) 96, 534
BseRI GAGGAG 2 cut(s) 335, 936
BseXI GCAGC 1 cut(s) 839
BseYI CCCAGC 1 cut(s) 1182
BsgI GTGCAG 1 cut(s) 577
BshFI GGCC 1 cut(s) 790
BshNI GGYRCC 1 cut(s) 803
BsiSI CCGG 1 cut(s) 787
BsnI GGCC 1 cut(s) 790
Bsp119I TTCGAA 1 cut(s) 652
Bsp1407I TGTACA 2 cut(s) 717, 989
Bsp143I GATC 4 cut(s) 9, 189, 340, 352
Bsp1720I GCTNAGC 1 cut(s) 831
BspACI CCGC 4 cut(s) 141, 476, 521, 954
BspANI GGCC 1 cut(s) 790
BspCNI CTCAG 2 cut(s) 712, 844
BspLI GGNNCC 1 cut(s) 805
BspPI GGATC 1 cut(s) 184
BspQI GCTCTTC 1 cut(s) 448
BspT104I TTCGAA 1 cut(s) 652
BspT107I GGYRCC 1 cut(s) 803
BspTI CTTAAG 1 cut(s) 359
BsrDI GCAATG 1 cut(s) 857
BsrFI RCCGGY 1 cut(s) 786
BsrGI TGTACA 2 cut(s) 717, 989
BsrI ACTGG 2 cut(s) 96, 534
BssAI RCCGGY 1 cut(s) 786
BssECI CCNNGG 5 cut(s) 193, 346, 399, 1122, 1144
BssMI GATC 4 cut(s) 9, 189, 340, 352
BssT1I CCWWGG 3 cut(s) 193, 399, 1122
Bst2UI CCWGG 2 cut(s) 710, 1145
Bst4CI ACNGT 3 cut(s) 151, 773, 994
Bst6I CTCTTC 2 cut(s) 374, 448
BstAFI CTTAAG 1 cut(s) 359
BstAUI TGTACA 2 cut(s) 717, 989
BstBI TTCGAA 1 cut(s) 652
BstDEI CTNAG 4 cut(s) 454, 635, 699, 831
BstF5I GGATG 2 cut(s) 204, 1087
BstKTI GATC 4 cut(s) 12, 192, 343, 355
BstMBI GATC 4 cut(s) 9, 189, 340, 352
BstMWI GCNNNNNNNGC 3 cut(s) 482, 695, 1124
BstNI CCWGG 2 cut(s) 710, 1145
BstNSI RCATGY 3 cut(s) 20, 622, 1050
BstSCI CCNGG 2 cut(s) 708, 1143
BstSFI CTRYAG 2 cut(s) 769, 957
BstV1I GCAGC 1 cut(s) 839
BstV2I GAAGAC 1 cut(s) 860
Bsu36I CCTNAGG 1 cut(s) 635
BsuRI GGCC 1 cut(s) 790
BtsCI GGATG 2 cut(s) 204, 1087
BtsI GCAGTG 1 cut(s) 672
BtsIMutI CAGTG 3 cut(s) 147, 527, 672
CaiI CAGNNNCTG 1 cut(s) 1100
Cfr10I RCCGGY 1 cut(s) 786
CseI GACGC 1 cut(s) 1160
Csp6I GTAC 3 cut(s) 646, 718, 990
CviAII CATG 6 cut(s) 17, 419, 431, 619, 1026, 1047
CviQI GTAC 3 cut(s) 646, 718, 990
DdeI CTNAG 4 cut(s) 454, 635, 699, 831
DpnI GATC 4 cut(s) 11, 191, 342, 354
DpnII GATC 4 cut(s) 9, 189, 340, 352
DraI TTTAAA 1 cut(s) 967
EaeI YGGCCR 1 cut(s) 788
Eam1104I CTCTTC 2 cut(s) 374, 448
EarI CTCTTC 2 cut(s) 374, 448
Eco130I CCWWGG 3 cut(s) 193, 399, 1122
Eco57I CTGAAG 1 cut(s) 117
Eco81I CCTNAGG 1 cut(s) 635
EcoRII CCWGG 2 cut(s) 708, 1143
EcoT14I CCWWGG 3 cut(s) 193, 399, 1122
EcoT22I ATGCAT 1 cut(s) 22
ErhI CCWWGG 3 cut(s) 193, 399, 1122
FaeI CATG 6 cut(s) 20, 422, 434, 622, 1029, 1050
FalI AAGNNNNNCTT 4 cut(s) 353, 385, 967, 999
FatI CATG 6 cut(s) 16, 418, 430, 618, 1025, 1046
FauI CCCGC 1 cut(s) 469
FauNDI CATATG 1 cut(s) 1129
FbaI TGATCA 2 cut(s) 9, 352
Fnu4HI GCNGC 1 cut(s) 828
FokI GGATG 2 cut(s) 211, 1074
Fsp4HI GCNGC 1 cut(s) 828
FspBI CTAG 2 cut(s) 551, 695
GluI GCNGC 1 cut(s) 828
GsaI CCCAGC 1 cut(s) 1186
GsuI CTGGAG 1 cut(s) 692
HaeIII GGCC 1 cut(s) 790
HapII CCGG 1 cut(s) 787
HgaI GACGC 1 cut(s) 1160
Hin1II CATG 6 cut(s) 20, 422, 434, 622, 1029, 1050
HincII GTYRAC 3 cut(s) 500, 747, 910
HindII GTYRAC 3 cut(s) 500, 747, 910
HindIII AAGCTT 2 cut(s) 81, 362
HinfI GANTC 5 cut(s) 285, 315, 496, 654, 866
HpaI GTTAAC 2 cut(s) 747, 910
HpaII CCGG 1 cut(s) 787
HphI GGTGA 3 cut(s) 362, 535, 1133
Hpy166II GTNNAC 5 cut(s) 226, 500, 747, 910, 1105
Hpy188I TCNGA 5 cut(s) 114, 212, 702, 819, 889
Hpy188III TCNNGA 1 cut(s) 386
Hpy8I GTNNAC 5 cut(s) 226, 500, 747, 910, 1105
Hpy99I CGWCG 2 cut(s) 754, 1154
HpyAV CCTTC 4 cut(s) 659, 679, 960, 1036
HpyCH4III ACNGT 3 cut(s) 151, 773, 994
HpyCH4IV ACGT 2 cut(s) 749, 1107
HpyCH4V TGCA 4 cut(s) 20, 485, 558, 677
HpyF10VI GCNNNNNNNGC 3 cut(s) 482, 695, 1124
HpyF3I CTNAG 4 cut(s) 454, 635, 699, 831
HpySE526I ACGT 2 cut(s) 749, 1107
Hsp92II CATG 6 cut(s) 20, 422, 434, 622, 1029, 1050
Ksp22I TGATCA 2 cut(s) 9, 352
KspAI GTTAAC 2 cut(s) 747, 910
Kzo9I GATC 4 cut(s) 9, 189, 340, 352
LguI GCTCTTC 1 cut(s) 448
Lsp1109I GCAGC 1 cut(s) 839
MaeI CTAG 2 cut(s) 551, 695
MaeII ACGT 2 cut(s) 749, 1107
MaeIII GTNAC 3 cut(s) 151, 523, 1083
MalI GATC 4 cut(s) 11, 191, 342, 354
MboI GATC 4 cut(s) 9, 189, 340, 352
MboII GAAGA 5 cut(s) 123, 361, 435, 865, 1064
MluCI AATT 7 cut(s) 411, 641, 713, 737, 820, 895, 1191
MlyI GAGTC 2 cut(s) 505, 860
MmeI TCCRAC 3 cut(s) 72, 912, 1115
MnlI CCTC 9 cut(s) 356, 403, 445, 511, 700, 722, 957, 1010, 1028
Mph1103I ATGCAT 1 cut(s) 22
MseI TTAA 7 cut(s) 360, 507, 746, 783, 909, 966, 1195
MspCI CTTAAG 1 cut(s) 359
MspI CCGG 1 cut(s) 787
MspR9I CCNGG 2 cut(s) 710, 1145
MvaI CCWGG 2 cut(s) 710, 1145
MwoI GCNNNNNNNGC 3 cut(s) 482, 695, 1124
NdeI CATATG 1 cut(s) 1129
NdeII GATC 4 cut(s) 9, 189, 340, 352
NlaIII CATG 6 cut(s) 20, 422, 434, 622, 1029, 1050
NlaIV GGNNCC 1 cut(s) 805
NmuCI GTSAC 1 cut(s) 523
NsiI ATGCAT 1 cut(s) 22
NspI RCATGY 3 cut(s) 20, 622, 1050
NspV TTCGAA 1 cut(s) 652
PciSI GCTCTTC 1 cut(s) 448
PfeI GAWTC 3 cut(s) 285, 315, 654
PfoI TCCNGGA 1 cut(s) 708
PkrI GCNGC 1 cut(s) 829
PleI GAGTC 2 cut(s) 504, 860
PpsI GAGTC 2 cut(s) 504, 860
Psp1406I AACGTT 1 cut(s) 1107
Psp6I CCWGG 2 cut(s) 708, 1143
PspFI CCCAGC 1 cut(s) 1182
PspGI CCWGG 2 cut(s) 708, 1143
PspN4I GGNNCC 1 cut(s) 805
PstNI CAGNNNCTG 1 cut(s) 1100
RsaI GTAC 3 cut(s) 647, 719, 991
RsaNI GTAC 3 cut(s) 646, 718, 990
SapI GCTCTTC 1 cut(s) 448
SaqAI TTAA 7 cut(s) 360, 507, 746, 783, 909, 966, 1195
SatI GCNGC 1 cut(s) 828
Sau3AI GATC 4 cut(s) 9, 189, 340, 352
SchI GAGTC 2 cut(s) 505, 860
ScrFI CCNGG 2 cut(s) 710, 1145
SfcI CTRYAG 2 cut(s) 769, 957
SfuI TTCGAA 1 cut(s) 652
SmlI CTYRAG 3 cut(s) 359, 493, 1005
SmoI CTYRAG 3 cut(s) 359, 493, 1005
Sse9I AATT 7 cut(s) 411, 641, 713, 737, 820, 895, 1191
SsiI CCGC 4 cut(s) 141, 476, 521, 954
SspMI CTAG 2 cut(s) 551, 695
StyD4I CCNGG 2 cut(s) 708, 1143
StyI CCWWGG 3 cut(s) 193, 399, 1122
TaaI ACNGT 3 cut(s) 151, 773, 994
TaiI ACGT 2 cut(s) 752, 1110
TaqI TCGA 3 cut(s) 288, 652, 864
TasI AATT 7 cut(s) 411, 641, 713, 737, 820, 895, 1191
TatI WGTACW 2 cut(s) 717, 989
TfiI GAWTC 3 cut(s) 285, 315, 654
Tru1I TTAA 7 cut(s) 360, 507, 746, 783, 909, 966, 1195
Tru9I TTAA 7 cut(s) 360, 507, 746, 783, 909, 966, 1195
TscAI CASTG 3 cut(s) 154, 534, 679
TseFI GTSAC 1 cut(s) 523
TseI GCWGC 1 cut(s) 827
Tsp45I GTSAC 1 cut(s) 523
TspDTI ATGAA 2 cut(s) 361, 407
TspRI CASTG 3 cut(s) 154, 534, 679
Vha464I CTTAAG 1 cut(s) 359
XapI RAATTY 2 cut(s) 737, 1191
XceI RCATGY 3 cut(s) 20, 622, 1050
XspI CTAG 2 cut(s) 551, 695
Zsp2I ATGCAT 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.