Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004904.1

Orthogroup ID

OG0006914

Physical Location & Seq

Genomic Coordinates Forward (+)

4849 .. 8311

Gene Structure 3463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004904.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

atgtttgtgttcggaagttctctggtggacaatggcaacaataacttcctggaaaccgagtccaaagctgattacttgccgtatggaatcgacttcccaaatggaacttctgggagattcacaaatggtaaaaatgttattgatctcctcggtgatcagcttaagcttcctttcattccaccatttcaagacccctccactaaaggaagtaaaattgttcatggtgtcaaccatgcctctggctctactggtatcttagatgatacaggattagttctgggtaatgcaacgagcttgagtcaacaagttaaggacttcgaggttgtgacactggcagagttagaagcagagctagggtgcaatagctctcaatctctaccaagctacttgattgttgtaggagttggtgggaatgattacatgctcaactatttccttaggaaattgtacctccgaatcagtcttgaaaccttcactgcaaatctcatcgactctctagctcagaaactccaggaattgtacaatttgggaggtcgtaaattcgtgttaacgtcgctaatgccattaggctacagtcctgtgattaacaggccaaatcatattggcaccccatcagctctgaattacgcagctcagctctacaacgctcacttgaagacattgctcgactctctgaaaactcacttatccgacttcaatttcgttttggttgaccaatataacattatatctaatctcacttattctcctccttccactacaggtggaaatggaatatcatgcgatagaggtgggaaggcatgtgaagataggacggcttatatgtattttgatgggttacatccaacagaagctgtaaatgttcaaatagcaaccaaggcatatgcttcttctcaacaggacgaggcttacccaatcaatgtcagccaacttgcccagcttcaaatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

316

Amino Acids

34.4

Weight (kDa)

5.08

Isoelectric Point (pI)

36.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g12400
malus_domestica	MD05G1039300.v1.1
prunus_persica	Prupe.8G051800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0272471 RchiOBHm_Chr6g0272551
rosa_laevigata	RLG00000013667
rosa_multiflora	Rmu_sc0002847.1_g000001 Rmu_sc0002847.1_g000006 Rmu_sc0003080.1_g000018 Rmu_sc0004003.1_g000020 Rmu_sc0004904.1_g000002
rosa_roxburghii	Rroxscaffold_7G00196160
rosa_rugosa	Rorug06G0069900 Rorug06G0069900 Rorug06G0070000
rosa_samantha	Rh6AG185600 Rh6AG186300 Rh6BG188700 Rh6BG189000 Rh6BG189400 Rh6CG186800 Rh6CG187200 Rh6DG178400 Rh6DG178900
rosa_wichuraiana	Rw0G015690 Rw6G016050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	605
AcsI	RAATTY	2 cut(s)	539, 945
AfaI	GTAC	2 cut(s)	449, 521
AflII	CTTAAG	1 cut(s)	161
AgsI	TTSAA	6 cut(s)	188, 467, 655, 697, 866, 944
AjnI	CCWGG	2 cut(s)	48, 510
AjuI	GAANNNNNNNTTGG	2 cut(s)	91, 123
AlwNI	CAGNNNCTG	1 cut(s)	854
AoxI	GGCC	1 cut(s)	590
ApeKI	GCWGC	1 cut(s)	629
ApoI	RAATTY	2 cut(s)	539, 945
ArsI	GACNNNNNNTTYG	2 cut(s)	683, 715
AsuHPI	GGTGA	1 cut(s)	164
AxyI	CCTNAGG	1 cut(s)	437
BanI	GGYRCC	1 cut(s)	605
BbsI	GAAGAC	1 cut(s)	662
BbvI	GCAGC	1 cut(s)	641
BccI	CCATC	2 cut(s)	619, 827
BceAI	ACGGC	2 cut(s)	64, 831
BciT130I	CCWGG	2 cut(s)	50, 512
BclI	TGATCA	1 cut(s)	154
BfaI	CTAG	2 cut(s)	353, 497
BfmI	CTRYAG	2 cut(s)	571, 759
BfrI	CTTAAG	1 cut(s)	161
BisI	GCNGC	1 cut(s)	630
BlpI	GCTNAGC	1 cut(s)	633
BlsI	GCNGC	1 cut(s)	631
Bme1390I	CCNGG	2 cut(s)	50, 512
BmiI	GGNNCC	1 cut(s)	607
BmrFI	CCNGG	2 cut(s)	50, 512
BpiI	GAAGAC	1 cut(s)	662
BpmI	CTGGAG	1 cut(s)	494
Bpu1102I	GCTNAGC	1 cut(s)	633
BpuEI	CTTGAG	1 cut(s)	316
BsaJI	CCNNGG	2 cut(s)	148, 876
BsaXI	ACNNNNNCTCC	2 cut(s)	730, 760
Bse1I	ACTGG	2 cut(s)	253, 336
Bse21I	CCTNAGG	1 cut(s)	437
Bse3DI	GCAATG	1 cut(s)	659
BseBI	CCWGG	2 cut(s)	50, 512
BseDI	CCNNGG	2 cut(s)	148, 876
BseGI	GGATG	1 cut(s)	841
BseMI	GCAATG	1 cut(s)	659
BseMII	CTCAG	2 cut(s)	515, 647
BseNI	ACTGG	2 cut(s)	253, 336
BseRI	GAGGAG	2 cut(s)	137, 738
BseXI	GCAGC	1 cut(s)	641
BseYI	CCCAGC	1 cut(s)	936
BshFI	GGCC	1 cut(s)	592
BshNI	GGYRCC	1 cut(s)	605
BsnI	GGCC	1 cut(s)	592
Bsp1407I	TGTACA	1 cut(s)	519
Bsp143I	GATC	2 cut(s)	142, 154
Bsp1720I	GCTNAGC	1 cut(s)	633
BspANI	GGCC	1 cut(s)	592
BspCNI	CTCAG	2 cut(s)	514, 646
BspLI	GGNNCC	1 cut(s)	607
BspT107I	GGYRCC	1 cut(s)	605
BspTI	CTTAAG	1 cut(s)	161
BsrDI	GCAATG	1 cut(s)	659
BsrGI	TGTACA	1 cut(s)	519
BsrI	ACTGG	2 cut(s)	253, 336
BssECI	CCNNGG	2 cut(s)	148, 876
BssMI	GATC	2 cut(s)	142, 154
BssT1I	CCWWGG	1 cut(s)	876
Bst2UI	CCWGG	2 cut(s)	50, 512
Bst4CI	ACNGT	1 cut(s)	575
BstAFI	CTTAAG	1 cut(s)	161
BstAUI	TGTACA	1 cut(s)	519
BstDEI	CTNAG	4 cut(s)	256, 437, 501, 633
BstF5I	GGATG	1 cut(s)	841
BstKTI	GATC	2 cut(s)	145, 157
BstMBI	GATC	2 cut(s)	142, 154
BstMWI	GCNNNNNNNGC	1 cut(s)	878
BstNI	CCWGG	2 cut(s)	50, 512
BstNSI	RCATGY	2 cut(s)	424, 804
BstSCI	CCNGG	2 cut(s)	48, 510
BstSFI	CTRYAG	2 cut(s)	571, 759
BstV1I	GCAGC	1 cut(s)	641
BstV2I	GAAGAC	1 cut(s)	662
BstXI	CCANNNNNNTGG	1 cut(s)	239
Bsu36I	CCTNAGG	1 cut(s)	437
BsuRI	GGCC	1 cut(s)	592
BtsCI	GGATG	1 cut(s)	841
BtsI	GCAGTG	1 cut(s)	474
BtsIMutI	CAGTG	2 cut(s)	329, 474
CaiI	CAGNNNCTG	1 cut(s)	854
Csp6I	GTAC	2 cut(s)	448, 520
CviAII	CATG	5 cut(s)	221, 233, 421, 780, 801
CviQI	GTAC	2 cut(s)	448, 520
DdeI	CTNAG	4 cut(s)	256, 437, 501, 633
DpnI	GATC	2 cut(s)	144, 156
DpnII	GATC	2 cut(s)	142, 154
Eco130I	CCWWGG	1 cut(s)	876
Eco81I	CCTNAGG	1 cut(s)	437
EcoRII	CCWGG	2 cut(s)	48, 510
EcoT14I	CCWWGG	1 cut(s)	876
ErhI	CCWWGG	1 cut(s)	876
FaeI	CATG	5 cut(s)	224, 236, 424, 783, 804
FatI	CATG	5 cut(s)	220, 232, 420, 779, 800
FauNDI	CATATG	1 cut(s)	883
FbaI	TGATCA	1 cut(s)	154
Fnu4HI	GCNGC	1 cut(s)	630
FokI	GGATG	1 cut(s)	828
Fsp4HI	GCNGC	1 cut(s)	630
FspBI	CTAG	2 cut(s)	353, 497
GluI	GCNGC	1 cut(s)	630
GsaI	CCCAGC	1 cut(s)	940
GsuI	CTGGAG	1 cut(s)	494
HaeIII	GGCC	1 cut(s)	592
Hin1II	CATG	5 cut(s)	224, 236, 424, 783, 804
HincII	GTYRAC	4 cut(s)	229, 302, 549, 712
HindII	GTYRAC	4 cut(s)	229, 302, 549, 712
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	7 cut(s)	59, 87, 117, 298, 456, 491, 668
HpaI	GTTAAC	1 cut(s)	549
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	5 cut(s)	28, 229, 302, 549, 712
Hpy188I	TCNGA	6 cut(s)	14, 455, 504, 621, 675, 691
Hpy188III	TCNNGA	2 cut(s)	188, 464
Hpy8I	GTNNAC	5 cut(s)	28, 229, 302, 549, 712
Hpy99I	CGWCG	1 cut(s)	556
HpyAV	CCTTC	3 cut(s)	481, 762, 790
HpyCH4III	ACNGT	1 cut(s)	575
HpyCH4IV	ACGT	1 cut(s)	551
HpyCH4V	TGCA	3 cut(s)	287, 360, 479
HpyF10VI	GCNNNNNNNGC	1 cut(s)	878
HpyF3I	CTNAG	4 cut(s)	256, 437, 501, 633
HpySE526I	ACGT	1 cut(s)	551
Hsp92II	CATG	5 cut(s)	224, 236, 424, 783, 804
Ksp22I	TGATCA	1 cut(s)	154
KspAI	GTTAAC	1 cut(s)	549
Kzo9I	GATC	2 cut(s)	142, 154
Lsp1109I	GCAGC	1 cut(s)	641
MaeI	CTAG	2 cut(s)	353, 497
MaeII	ACGT	1 cut(s)	551
MaeIII	GTNAC	2 cut(s)	325, 837
MalI	GATC	2 cut(s)	144, 156
MboI	GATC	2 cut(s)	142, 154
MboII	GAAGA	3 cut(s)	667, 818, 882
MluCI	AATT	8 cut(s)	213, 443, 515, 523, 539, 622, 697, 945
MlyI	GAGTC	4 cut(s)	68, 307, 485, 662
MmeI	TCCRAC	2 cut(s)	714, 869
MnlI	CCTC	9 cut(s)	158, 205, 247, 313, 461, 524, 759, 782, 898
MseI	TTAA	5 cut(s)	162, 309, 548, 585, 949
MspCI	CTTAAG	1 cut(s)	161
MspR9I	CCNGG	2 cut(s)	50, 512
MvaI	CCWGG	2 cut(s)	50, 512
MwoI	GCNNNNNNNGC	1 cut(s)	878
NdeI	CATATG	1 cut(s)	883
NdeII	GATC	2 cut(s)	142, 154
NlaIII	CATG	5 cut(s)	224, 236, 424, 783, 804
NlaIV	GGNNCC	1 cut(s)	607
NmuCI	GTSAC	1 cut(s)	325
NspI	RCATGY	2 cut(s)	424, 804
PfeI	GAWTC	3 cut(s)	87, 117, 456
PfoI	TCCNGGA	2 cut(s)	48, 510
PkrI	GCNGC	1 cut(s)	631
PleI	GAGTC	4 cut(s)	67, 306, 485, 662
PpsI	GAGTC	4 cut(s)	67, 306, 485, 662
Psp6I	CCWGG	2 cut(s)	48, 510
PspFI	CCCAGC	1 cut(s)	936
PspGI	CCWGG	2 cut(s)	48, 510
PspN4I	GGNNCC	1 cut(s)	607
PstNI	CAGNNNCTG	1 cut(s)	854
RsaI	GTAC	2 cut(s)	449, 521
RsaNI	GTAC	2 cut(s)	448, 520
SaqAI	TTAA	5 cut(s)	162, 309, 548, 585, 949
SatI	GCNGC	1 cut(s)	630
Sau3AI	GATC	2 cut(s)	142, 154
SchI	GAGTC	4 cut(s)	68, 307, 485, 662
ScrFI	CCNGG	2 cut(s)	50, 512
SfcI	CTRYAG	2 cut(s)	571, 759
SmlI	CTYRAG	2 cut(s)	161, 295
SmoI	CTYRAG	2 cut(s)	161, 295
Sse9I	AATT	8 cut(s)	213, 443, 515, 523, 539, 622, 697, 945
SspMI	CTAG	2 cut(s)	353, 497
StyD4I	CCNGG	2 cut(s)	48, 510
StyI	CCWWGG	1 cut(s)	876
TaaI	ACNGT	1 cut(s)	575
TaiI	ACGT	1 cut(s)	554
TaqI	TCGA	4 cut(s)	90, 318, 489, 666
TasI	AATT	8 cut(s)	213, 443, 515, 523, 539, 622, 697, 945
TatI	WGTACW	1 cut(s)	519
TfiI	GAWTC	3 cut(s)	87, 117, 456
Tru1I	TTAA	5 cut(s)	162, 309, 548, 585, 949
Tru9I	TTAA	5 cut(s)	162, 309, 548, 585, 949
TscAI	CASTG	2 cut(s)	336, 481
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	1 cut(s)	629
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	2 cut(s)	163, 209
TspRI	CASTG	2 cut(s)	336, 481
Vha464I	CTTAAG	1 cut(s)	161
XapI	RAATTY	2 cut(s)	539, 945
XceI	RCATGY	2 cut(s)	424, 804
XspI	CTAG	2 cut(s)	353, 497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.