Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004003.1

Orthogroup ID

OG0006914

Physical Location & Seq

Genomic Coordinates Reverse (-)

87932 .. 89819

Gene Structure 1888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004003.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

atgtttgtattcggaagctctctggtggacaatggtaacaataacttcttggaaaccaagtccaaagccgattacttgccgtatggaatcgacttcccaaatggaacttctgggagattcacaaatggtaaaaatgttattgatctccttggtgatcagcttaagctacccttcattccaccatttcaagacccctccactaaaggaagtaaaattgttcatggtgtcaaccatgcctctggctctactggtatcttagatgatacaggattagttctgggtaatgaaccgagcttgagtcaacaagttaaggactttgaggcggtgacactggcagagttagaagcagagcttgggtgcagtagccctcaatcgctaccaagctacttgattgttgtaggagttggtggcatcatgctcaactatttccttaggaaattgtacctccgaatcagtattgaaaccttcactgcaaatctcatagactctctagctcagaaactccaggaattgtacaatttgggaggtagtaaattcgtgttaacgtcactaatgccattaggctacagtcctgtgattaacaggccaaatcctattggcaccgaatcagctctgaatcaggcagctcagctctacaacgctcacttgaagacattgctcggctctctcaaaactcacttatccgacttcaatttcgttttggttaaccaatataacattatatctaatctcacttattctcctccttccactactggtacttttagtatcattggctttatagacataagcgacccttgttgtacagtttccctctctcaaggtgcctacctttcaggtggaattggaatatcatgcgatagaggtgggaaggcatgtgaagataggacggcttatatgtattttgatgggttacatccaacagaagctgtaaatgttcaaatagcaaccaaggcatatgcttctactcaccagggtgaggcttacccaatcaatgtcagccaacttgcccagcttcaaatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

341

Amino Acids

36.7

Weight (kDa)

5.2

Isoelectric Point (pI)

33.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g12400
malus_domestica	MD05G1039300.v1.1
prunus_persica	Prupe.8G051800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0272471 RchiOBHm_Chr6g0272551
rosa_laevigata	RLG00000013667
rosa_multiflora	Rmu_sc0002847.1_g000001 Rmu_sc0002847.1_g000006 Rmu_sc0003080.1_g000018 Rmu_sc0004003.1_g000020 Rmu_sc0004904.1_g000002
rosa_roxburghii	Rroxscaffold_7G00196160
rosa_rugosa	Rorug06G0069900 Rorug06G0069900 Rorug06G0070000
rosa_samantha	Rh6AG185600 Rh6AG186300 Rh6BG188700 Rh6BG189000 Rh6BG189400 Rh6CG186800 Rh6CG187200 Rh6DG178400 Rh6DG178900
rosa_wichuraiana	Rw0G015690 Rw6G016050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	599, 824
AciI	CCGC	1 cut(s)	323
AcsI	RAATTY	2 cut(s)	533, 1020
AfaI	GTAC	4 cut(s)	443, 515, 760, 805
AfiI	CCNNNNNNNGG	1 cut(s)	979
AflII	CTTAAG	1 cut(s)	161
AgsI	TTSAA	6 cut(s)	188, 461, 649, 691, 941, 1019
AjnI	CCWGG	2 cut(s)	504, 972
AjuI	GAANNNNNNNTTGG	4 cut(s)	91, 123, 336, 368
AleI	CACNNNNGTG	1 cut(s)	975
AlwNI	CAGNNNCTG	1 cut(s)	929
AoxI	GGCC	1 cut(s)	584
ApeKI	GCWGC	1 cut(s)	623
ApoI	RAATTY	2 cut(s)	533, 1020
ArsI	GACNNNNNNTTYG	2 cut(s)	677, 709
AsuHPI	GGTGA	4 cut(s)	164, 337, 962, 989
AxyI	CCTNAGG	1 cut(s)	431
BanI	GGYRCC	2 cut(s)	599, 824
BbsI	GAAGAC	1 cut(s)	656
BbvI	GCAGC	1 cut(s)	635
BccI	CCATC	1 cut(s)	902
BceAI	ACGGC	2 cut(s)	64, 906
BciT130I	CCWGG	2 cut(s)	506, 974
BclI	TGATCA	1 cut(s)	154
BfaI	CTAG	1 cut(s)	491
BfmI	CTRYAG	1 cut(s)	565
BfrI	CTTAAG	1 cut(s)	161
BisI	GCNGC	1 cut(s)	624
BlpI	GCTNAGC	1 cut(s)	627
BlsI	GCNGC	1 cut(s)	625
Bme1390I	CCNGG	2 cut(s)	506, 974
BmiI	GGNNCC	2 cut(s)	601, 826
BmrFI	CCNGG	2 cut(s)	506, 974
BmsI	GCATC	1 cut(s)	420
BpiI	GAAGAC	1 cut(s)	656
BpmI	CTGGAG	1 cut(s)	488
Bpu1102I	GCTNAGC	1 cut(s)	627
BpuEI	CTTGAG	2 cut(s)	316, 804
BsaJI	CCNNGG	3 cut(s)	148, 951, 973
BsaXI	ACNNNNNCTCC	2 cut(s)	724, 754
Bsc4I	CCNNNNNNNGG	1 cut(s)	979
Bse1I	ACTGG	3 cut(s)	253, 336, 760
Bse21I	CCTNAGG	1 cut(s)	431
Bse3DI	GCAATG	1 cut(s)	653
BseBI	CCWGG	2 cut(s)	506, 974
BseDI	CCNNGG	3 cut(s)	148, 951, 973
BseGI	GGATG	1 cut(s)	916
BseLI	CCNNNNNNNGG	1 cut(s)	979
BseMI	GCAATG	1 cut(s)	653
BseMII	CTCAG	2 cut(s)	509, 641
BseNI	ACTGG	3 cut(s)	253, 336, 760
BseRI	GAGGAG	1 cut(s)	732
BseXI	GCAGC	1 cut(s)	635
BseYI	CCCAGC	1 cut(s)	1011
BsgI	GTGCAG	1 cut(s)	379
BshFI	GGCC	1 cut(s)	586
BshNI	GGYRCC	2 cut(s)	599, 824
BslI	CCNNNNNNNGG	1 cut(s)	979
BsnI	GGCC	1 cut(s)	586
Bsp1407I	TGTACA	2 cut(s)	513, 803
Bsp143I	GATC	2 cut(s)	142, 154
Bsp1720I	GCTNAGC	1 cut(s)	627
BspACI	CCGC	1 cut(s)	323
BspANI	GGCC	1 cut(s)	586
BspCNI	CTCAG	2 cut(s)	508, 640
BspLI	GGNNCC	2 cut(s)	601, 826
BspT107I	GGYRCC	2 cut(s)	599, 824
BspTI	CTTAAG	1 cut(s)	161
BsrDI	GCAATG	1 cut(s)	653
BsrGI	TGTACA	2 cut(s)	513, 803
BsrI	ACTGG	3 cut(s)	253, 336, 760
BssECI	CCNNGG	3 cut(s)	148, 951, 973
BssMI	GATC	2 cut(s)	142, 154
BssT1I	CCWWGG	2 cut(s)	148, 951
Bst2UI	CCWGG	2 cut(s)	506, 974
Bst4CI	ACNGT	2 cut(s)	569, 808
BstAFI	CTTAAG	1 cut(s)	161
BstAUI	TGTACA	2 cut(s)	513, 803
BstDEI	CTNAG	4 cut(s)	256, 431, 495, 627
BstF5I	GGATG	1 cut(s)	916
BstKTI	GATC	2 cut(s)	145, 157
BstMBI	GATC	2 cut(s)	142, 154
BstMWI	GCNNNNNNNGC	1 cut(s)	953
BstNI	CCWGG	2 cut(s)	506, 974
BstNSI	RCATGY	1 cut(s)	879
BstSCI	CCNGG	2 cut(s)	504, 972
BstSFI	CTRYAG	1 cut(s)	565
BstV1I	GCAGC	1 cut(s)	635
BstV2I	GAAGAC	1 cut(s)	656
BstXI	CCANNNNNNTGG	1 cut(s)	239
Bsu36I	CCTNAGG	1 cut(s)	431
BsuRI	GGCC	1 cut(s)	586
BtsCI	GGATG	1 cut(s)	916
BtsI	GCAGTG	1 cut(s)	468
BtsIMutI	CAGTG	2 cut(s)	329, 468
CaiI	CAGNNNCTG	1 cut(s)	929
Csp6I	GTAC	4 cut(s)	442, 514, 759, 804
CviAII	CATG	5 cut(s)	221, 233, 415, 855, 876
CviQI	GTAC	4 cut(s)	442, 514, 759, 804
DdeI	CTNAG	4 cut(s)	256, 431, 495, 627
DpnI	GATC	2 cut(s)	144, 156
DpnII	GATC	2 cut(s)	142, 154
Eco130I	CCWWGG	2 cut(s)	148, 951
Eco81I	CCTNAGG	1 cut(s)	431
EcoRII	CCWGG	2 cut(s)	504, 972
EcoT14I	CCWWGG	2 cut(s)	148, 951
ErhI	CCWWGG	2 cut(s)	148, 951
FaeI	CATG	5 cut(s)	224, 236, 418, 858, 879
FalI	AAGNNNNNCTT	6 cut(s)	155, 187, 336, 368, 781, 813
FatI	CATG	5 cut(s)	220, 232, 414, 854, 875
FauNDI	CATATG	1 cut(s)	958
FbaI	TGATCA	1 cut(s)	154
Fnu4HI	GCNGC	1 cut(s)	624
FokI	GGATG	1 cut(s)	903
Fsp4HI	GCNGC	1 cut(s)	624
FspBI	CTAG	1 cut(s)	491
GluI	GCNGC	1 cut(s)	624
GsaI	CCCAGC	1 cut(s)	1015
GsuI	CTGGAG	1 cut(s)	488
HaeIII	GGCC	1 cut(s)	586
Hin1II	CATG	5 cut(s)	224, 236, 418, 858, 879
HincII	GTYRAC	4 cut(s)	229, 302, 543, 706
HindII	GTYRAC	4 cut(s)	229, 302, 543, 706
HinfI	GANTC	7 cut(s)	87, 117, 298, 450, 485, 605, 616
HpaI	GTTAAC	2 cut(s)	543, 706
HphI	GGTGA	4 cut(s)	164, 337, 962, 989
Hpy166II	GTNNAC	5 cut(s)	28, 229, 302, 543, 706
Hpy188I	TCNGA	5 cut(s)	14, 449, 498, 615, 685
Hpy188III	TCNNGA	1 cut(s)	188
Hpy8I	GTNNAC	5 cut(s)	28, 229, 302, 543, 706
HpyAV	CCTTC	4 cut(s)	181, 475, 756, 865
HpyCH4III	ACNGT	2 cut(s)	569, 808
HpyCH4IV	ACGT	1 cut(s)	545
HpyCH4V	TGCA	2 cut(s)	360, 473
HpyF10VI	GCNNNNNNNGC	1 cut(s)	953
HpyF3I	CTNAG	4 cut(s)	256, 431, 495, 627
HpySE526I	ACGT	1 cut(s)	545
Hsp92II	CATG	5 cut(s)	224, 236, 418, 858, 879
Ksp22I	TGATCA	1 cut(s)	154
KspAI	GTTAAC	2 cut(s)	543, 706
Kzo9I	GATC	2 cut(s)	142, 154
Lsp1109I	GCAGC	1 cut(s)	635
LweI	GCATC	1 cut(s)	420
MaeI	CTAG	1 cut(s)	491
MaeII	ACGT	1 cut(s)	545
MaeIII	GTNAC	4 cut(s)	35, 325, 546, 912
MalI	GATC	2 cut(s)	144, 156
MboI	GATC	2 cut(s)	142, 154
MboII	GAAGA	2 cut(s)	661, 893
MluCI	AATT	8 cut(s)	213, 437, 509, 517, 533, 691, 843, 1020
MlyI	GAGTC	2 cut(s)	307, 479
MmeI	TCCRAC	2 cut(s)	708, 944
MseI	TTAA	6 cut(s)	162, 309, 542, 579, 705, 1024
MslI	CAYNNNNRTG	1 cut(s)	975
MspCI	CTTAAG	1 cut(s)	161
MspR9I	CCNGG	2 cut(s)	506, 974
MvaI	CCWGG	2 cut(s)	506, 974
MwoI	GCNNNNNNNGC	1 cut(s)	953
NdeI	CATATG	1 cut(s)	958
NdeII	GATC	2 cut(s)	142, 154
NlaIII	CATG	5 cut(s)	224, 236, 418, 858, 879
NlaIV	GGNNCC	2 cut(s)	601, 826
NmeAIII	GCCGAG	1 cut(s)	639
NmuCI	GTSAC	2 cut(s)	325, 546
NspI	RCATGY	1 cut(s)	879
OliI	CACNNNNGTG	1 cut(s)	975
PfeI	GAWTC	5 cut(s)	87, 117, 450, 605, 616
PfoI	TCCNGGA	1 cut(s)	504
PkrI	GCNGC	1 cut(s)	625
PleI	GAGTC	2 cut(s)	306, 479
PpsI	GAGTC	2 cut(s)	306, 479
Psp6I	CCWGG	2 cut(s)	504, 972
PspFI	CCCAGC	1 cut(s)	1011
PspGI	CCWGG	2 cut(s)	504, 972
PspN4I	GGNNCC	2 cut(s)	601, 826
PstNI	CAGNNNCTG	1 cut(s)	929
RsaI	GTAC	4 cut(s)	443, 515, 760, 805
RsaNI	GTAC	4 cut(s)	442, 514, 759, 804
RseI	CAYNNNNRTG	1 cut(s)	975
SaqAI	TTAA	6 cut(s)	162, 309, 542, 579, 705, 1024
SatI	GCNGC	1 cut(s)	624
Sau3AI	GATC	2 cut(s)	142, 154
SchI	GAGTC	2 cut(s)	307, 479
ScrFI	CCNGG	2 cut(s)	506, 974
SfaNI	GCATC	1 cut(s)	420
SfcI	CTRYAG	1 cut(s)	565
SmiMI	CAYNNNNRTG	1 cut(s)	975
SmlI	CTYRAG	3 cut(s)	161, 295, 819
SmoI	CTYRAG	3 cut(s)	161, 295, 819
Sse9I	AATT	8 cut(s)	213, 437, 509, 517, 533, 691, 843, 1020
SsiI	CCGC	1 cut(s)	323
SspMI	CTAG	1 cut(s)	491
StyD4I	CCNGG	2 cut(s)	504, 972
StyI	CCWWGG	2 cut(s)	148, 951
TaaI	ACNGT	2 cut(s)	569, 808
TaiI	ACGT	1 cut(s)	548
TaqI	TCGA	1 cut(s)	90
TasI	AATT	8 cut(s)	213, 437, 509, 517, 533, 691, 843, 1020
TatI	WGTACW	2 cut(s)	513, 803
TfiI	GAWTC	5 cut(s)	87, 117, 450, 605, 616
Tru1I	TTAA	6 cut(s)	162, 309, 542, 579, 705, 1024
Tru9I	TTAA	6 cut(s)	162, 309, 542, 579, 705, 1024
TscAI	CASTG	2 cut(s)	336, 475
TseFI	GTSAC	2 cut(s)	325, 546
TseI	GCWGC	1 cut(s)	623
Tsp45I	GTSAC	2 cut(s)	325, 546
TspDTI	ATGAA	3 cut(s)	163, 209, 300
TspRI	CASTG	2 cut(s)	336, 475
Vha464I	CTTAAG	1 cut(s)	161
XapI	RAATTY	2 cut(s)	533, 1020
XceI	RCATGY	1 cut(s)	879
XspI	CTAG	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.